From 6303624cb6c15845684f0cb6b74c1e27b79a8315 Mon Sep 17 00:00:00 2001
From: github-actions <github-actions@github.com>
Date: Fri, 25 Oct 2024 10:08:43 +0000
Subject: [PATCH] Update documentation

---
 sed/develop/_modules/index.html               |   1 -
 sed/develop/_modules/sed/binning/binning.html |   1 -
 .../_modules/sed/binning/numba_bin.html       |   1 -
 sed/develop/_modules/sed/binning/utils.html   |   1 -
 .../_modules/sed/calibrator/delay.html        |   1 -
 .../_modules/sed/calibrator/energy.html       |   1 -
 .../_modules/sed/calibrator/momentum.html     |   1 -
 sed/develop/_modules/sed/core/config.html     |   1 -
 sed/develop/_modules/sed/core/dfops.html      |   1 -
 sed/develop/_modules/sed/core/metadata.html   |   1 -
 sed/develop/_modules/sed/core/processor.html  |   1 -
 sed/develop/_modules/sed/dataset/dataset.html |   1 -
 sed/develop/_modules/sed/diagnostics.html     |   1 -
 sed/develop/_modules/sed/io/hdf5.html         |   1 -
 sed/develop/_modules/sed/io/nexus.html        |   1 -
 sed/develop/_modules/sed/io/tiff.html         |   1 -
 .../_modules/sed/loader/base/loader.html      |   1 -
 .../_modules/sed/loader/flash/loader.html     |   1 -
 .../_modules/sed/loader/flash/metadata.html   |   1 -
 .../_modules/sed/loader/generic/loader.html   |   1 -
 .../_modules/sed/loader/loader_interface.html |   1 -
 .../_modules/sed/loader/mirrorutil.html       |   1 -
 .../_modules/sed/loader/mpes/loader.html      |   1 -
 .../_modules/sed/loader/sxp/loader.html       |   1 -
 sed/develop/_modules/sed/loader/utils.html    |   1 -
 sed/develop/_sources/user_guide/index.md.txt  |   7 +-
 sed/develop/genindex.html                     |   1 -
 sed/develop/index.html                        |  16 ++---
 sed/develop/misc/contributing.html            |   1 -
 sed/develop/misc/contribution.html            |   1 -
 sed/develop/misc/maintain.html                |   1 -
 sed/develop/objects.inv                       | Bin 9681 -> 7538 bytes
 sed/develop/py-modindex.html                  |   1 -
 sed/develop/search.html                       |   1 -
 sed/develop/searchindex.js                    |   2 +-
 sed/develop/sed/api.html                      |   7 +-
 sed/develop/sed/binning.html                  |   1 -
 sed/develop/sed/calibrator.html               |   1 -
 sed/develop/sed/config.html                   |   1 -
 sed/develop/sed/core.html                     |   1 -
 sed/develop/sed/dataset.html                  |   1 -
 sed/develop/sed/dfops.html                    |   1 -
 sed/develop/sed/diagnostic.html               |   1 -
 sed/develop/sed/io.html                       |   1 -
 sed/develop/sed/loader.html                   |   1 -
 sed/develop/sed/metadata.html                 |   1 -
 sed/develop/user_guide/advanced_topics.html   |  25 ++-----
 sed/develop/user_guide/config.html            |  20 ++----
 sed/develop/user_guide/index.html             |  48 +++++++-------
 sed/develop/user_guide/installation.html      |  20 ++----
 sed/develop/workflows/index.html              |  62 ++----------------
 sed/switcher.json                             |   2 +-
 52 files changed, 56 insertions(+), 194 deletions(-)

diff --git a/sed/develop/_modules/index.html b/sed/develop/_modules/index.html
index cbd4839..6894892 100644
--- a/sed/develop/_modules/index.html
+++ b/sed/develop/_modules/index.html
@@ -41,7 +41,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
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-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/index';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/binning/binning.html b/sed/develop/_modules/sed/binning/binning.html
index dae0016..89ced35 100644
--- a/sed/develop/_modules/sed/binning/binning.html
+++ b/sed/develop/_modules/sed/binning/binning.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
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-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/binning/binning';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/binning/numba_bin.html b/sed/develop/_modules/sed/binning/numba_bin.html
index 1a9814f..832f130 100644
--- a/sed/develop/_modules/sed/binning/numba_bin.html
+++ b/sed/develop/_modules/sed/binning/numba_bin.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
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-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/binning/numba_bin';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/binning/utils.html b/sed/develop/_modules/sed/binning/utils.html
index 0f5972f..b825b97 100644
--- a/sed/develop/_modules/sed/binning/utils.html
+++ b/sed/develop/_modules/sed/binning/utils.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
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-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/binning/utils';</script>
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diff --git a/sed/develop/_modules/sed/calibrator/delay.html b/sed/develop/_modules/sed/calibrator/delay.html
index e3fd2a7..7a50704 100644
--- a/sed/develop/_modules/sed/calibrator/delay.html
+++ b/sed/develop/_modules/sed/calibrator/delay.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
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-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/calibrator/delay';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/calibrator/energy.html b/sed/develop/_modules/sed/calibrator/energy.html
index 1051e39..4ab330b 100644
--- a/sed/develop/_modules/sed/calibrator/energy.html
+++ b/sed/develop/_modules/sed/calibrator/energy.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/calibrator/energy';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/calibrator/momentum.html b/sed/develop/_modules/sed/calibrator/momentum.html
index aee34d1..539c01e 100644
--- a/sed/develop/_modules/sed/calibrator/momentum.html
+++ b/sed/develop/_modules/sed/calibrator/momentum.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/calibrator/momentum';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/core/config.html b/sed/develop/_modules/sed/core/config.html
index 97e7db5..6849881 100644
--- a/sed/develop/_modules/sed/core/config.html
+++ b/sed/develop/_modules/sed/core/config.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/core/config';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/core/dfops.html b/sed/develop/_modules/sed/core/dfops.html
index 52fcc1b..abb4fd0 100644
--- a/sed/develop/_modules/sed/core/dfops.html
+++ b/sed/develop/_modules/sed/core/dfops.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/core/dfops';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/core/metadata.html b/sed/develop/_modules/sed/core/metadata.html
index 8f202e4..ce8be36 100644
--- a/sed/develop/_modules/sed/core/metadata.html
+++ b/sed/develop/_modules/sed/core/metadata.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/core/metadata';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/core/processor.html b/sed/develop/_modules/sed/core/processor.html
index 93bea41..8863f7f 100644
--- a/sed/develop/_modules/sed/core/processor.html
+++ b/sed/develop/_modules/sed/core/processor.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/core/processor';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/dataset/dataset.html b/sed/develop/_modules/sed/dataset/dataset.html
index b8404bf..05a4a62 100644
--- a/sed/develop/_modules/sed/dataset/dataset.html
+++ b/sed/develop/_modules/sed/dataset/dataset.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/dataset/dataset';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/diagnostics.html b/sed/develop/_modules/sed/diagnostics.html
index 4d12faa..7925ad7 100644
--- a/sed/develop/_modules/sed/diagnostics.html
+++ b/sed/develop/_modules/sed/diagnostics.html
@@ -41,7 +41,6 @@
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/diagnostics';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/io/hdf5.html b/sed/develop/_modules/sed/io/hdf5.html
index 3d6e20e..684d486 100644
--- a/sed/develop/_modules/sed/io/hdf5.html
+++ b/sed/develop/_modules/sed/io/hdf5.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
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-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/io/hdf5';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/io/nexus.html b/sed/develop/_modules/sed/io/nexus.html
index 9c3b9f2..55aadfe 100644
--- a/sed/develop/_modules/sed/io/nexus.html
+++ b/sed/develop/_modules/sed/io/nexus.html
@@ -41,7 +41,6 @@
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-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/io/nexus';</script>
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diff --git a/sed/develop/_modules/sed/io/tiff.html b/sed/develop/_modules/sed/io/tiff.html
index 6588d42..e7f7bba 100644
--- a/sed/develop/_modules/sed/io/tiff.html
+++ b/sed/develop/_modules/sed/io/tiff.html
@@ -41,7 +41,6 @@
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-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/io/tiff';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/loader/base/loader.html b/sed/develop/_modules/sed/loader/base/loader.html
index a592137..47627c3 100644
--- a/sed/develop/_modules/sed/loader/base/loader.html
+++ b/sed/develop/_modules/sed/loader/base/loader.html
@@ -41,7 +41,6 @@
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     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/loader/base/loader';</script>
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diff --git a/sed/develop/_modules/sed/loader/flash/loader.html b/sed/develop/_modules/sed/loader/flash/loader.html
index 6115625..1910283 100644
--- a/sed/develop/_modules/sed/loader/flash/loader.html
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@@ -41,7 +41,6 @@
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     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/loader/flash/loader';</script>
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diff --git a/sed/develop/_modules/sed/loader/flash/metadata.html b/sed/develop/_modules/sed/loader/flash/metadata.html
index 3987139..45e121e 100644
--- a/sed/develop/_modules/sed/loader/flash/metadata.html
+++ b/sed/develop/_modules/sed/loader/flash/metadata.html
@@ -41,7 +41,6 @@
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-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/loader/flash/metadata';</script>
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diff --git a/sed/develop/_modules/sed/loader/generic/loader.html b/sed/develop/_modules/sed/loader/generic/loader.html
index f7e6dcf..b8377e3 100644
--- a/sed/develop/_modules/sed/loader/generic/loader.html
+++ b/sed/develop/_modules/sed/loader/generic/loader.html
@@ -41,7 +41,6 @@
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diff --git a/sed/develop/_modules/sed/loader/loader_interface.html b/sed/develop/_modules/sed/loader/loader_interface.html
index 77626aa..9b178d0 100644
--- a/sed/develop/_modules/sed/loader/loader_interface.html
+++ b/sed/develop/_modules/sed/loader/loader_interface.html
@@ -41,7 +41,6 @@
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diff --git a/sed/develop/_sources/user_guide/index.md.txt b/sed/develop/_sources/user_guide/index.md.txt
index e7b4e90..16d36aa 100644
--- a/sed/develop/_sources/user_guide/index.md.txt
+++ b/sed/develop/_sources/user_guide/index.md.txt
@@ -6,14 +6,14 @@ myst:
 ---
 # User Guide
 
+## Installing SED
 ```{toctree}
-:caption: Installing SED
 :maxdepth: 1
 installation
 ```
 
+## Basic concepts
 ```{toctree}
-:caption: Basic concepts
 :maxdepth: 1
 ../tutorial/1_binning_fake_data
 ../tutorial/2_conversion_pipeline_for_example_time-resolved_ARPES_data
@@ -21,8 +21,9 @@ installation
 config
 ```
 
+## Advanced Topics
+
 ```{toctree}
 :maxdepth: 1
-:caption: Advanced Topics
 advanced_topics
 ```
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@@ -401,15 +400,9 @@ <h2>User guide<a class="headerlink" href="#user-guide" title="Permalink to this
 <div class="toctree-wrapper compound">
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="user_guide/index.html">User Guide</a><ul>
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-<li class="toctree-l2"><a class="reference internal" href="user_guide/installation.html#development-version">Development version</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial/1_binning_fake_data.html">Binning demonstration on locally generated fake data</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial/2_conversion_pipeline_for_example_time-resolved_ARPES_data.html">Demonstration of the conversion pipeline using time-resolved ARPES data stored on Zenodo</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial/3_metadata_collection_and_export_to_NeXus.html">Binning with metadata generation, and storing into a NeXus file</a></li>
-<li class="toctree-l2"><a class="reference internal" href="user_guide/config.html">Configuration</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial/6_binning_with_time-stamped_data.html">Binning of temperature-dependent ARPES data using time-stamped external temperature data</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial/7_correcting_orthorhombic_symmetry.html">Distortion correction with orthorhombic symmetry</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial/8_jittering_tutorial.html">Correct use of Jittering</a></li>
+<li class="toctree-l2"><a class="reference internal" href="user_guide/index.html#installing-sed">Installing SED</a></li>
+<li class="toctree-l2"><a class="reference internal" href="user_guide/index.html#basic-concepts">Basic concepts</a></li>
+<li class="toctree-l2"><a class="reference internal" href="user_guide/index.html#advanced-topics">Advanced Topics</a></li>
 </ul>
 </li>
 </ul>
@@ -420,8 +413,7 @@ <h2>Examples<a class="headerlink" href="#examples" title="Permalink to this head
 <p>Several example notebooks to demonstrate the functionality of SED for end-to-end data analysis workflows.</p>
 <div class="toctree-wrapper compound">
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="workflows/index.html">Workflows</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="tutorial/4_hextof_workflow.html">Tutorial for binning data from the HEXTOF instrument at FLASH</a></li>
+<li class="toctree-l1"><a class="reference internal" href="workflows/index.html">Workflows</a><ul class="simple">
 </ul>
 </li>
 </ul>
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correction": [[6, "module-sed.calibrator.delay"]], "Config": [[7, "module-sed.core.config"]], "Core": [[8, "module-sed.core"]], "Dataset": [[9, "dataset"]], "Getting datasets": [[9, "getting-datasets"]], "get()": [[9, "get"]], "remove()": [[9, "remove"]], "Attributes useful for user": [[9, "attributes-useful-for-user"]], "Example of adding custom datasets": [[9, "example-of-adding-custom-datasets"]], "DatasetsManager": [[9, "datasetsmanager"]], "Default datasets.json": [[9, "default-datasets-json"]], "Dataframe Operations": [[10, "module-sed.core.dfops"]], "Diagnostics": [[11, "module-sed.diagnostics"]], "IO": [[12, "module-sed.io"]], "Data loader": [[13, "data-loader"]], "Loader Interface": [[13, "module-sed.loader.loader_interface"]], "Abstract BaseLoader": [[13, "module-sed.loader.base.loader"]], "GenericLoader": [[13, "module-sed.loader.generic.loader"]], "MpesLoader": [[13, "module-sed.loader.mpes.loader"]], "FlashLoader": [[13, "module-sed.loader.flash.loader"]], "SXPLoader": [[13, "module-sed.loader.sxp.loader"]], "Utilities": [[13, "module-sed.loader.utils"]], "Metadata": [[14, "module-sed.core.metadata"]], "Binning demonstration on locally generated fake data": [[15, "Binning-demonstration-on-locally-generated-fake-data"]], "Generate Fake Data": [[15, "Generate-Fake-Data"]], "Define the binning range": [[15, "Define-the-binning-range"]], "Compute the binning along the pandas dataframe": [[15, "Compute-the-binning-along-the-pandas-dataframe"]], "Transform to dask dataframe": [[15, "Transform-to-dask-dataframe"]], "Compute distributed binning on the partitioned dask dataframe": [[15, "Compute-distributed-binning-on-the-partitioned-dask-dataframe"]], "Demonstration of the conversion pipeline using time-resolved ARPES data stored on Zenodo": [[16, "Demonstration-of-the-conversion-pipeline-using-time-resolved-ARPES-data-stored-on-Zenodo"]], "Load Data": [[16, "Load-Data"], [17, "Load-Data"], [19, "Load-Data"], [20, "Load-Data"], [21, "Load-Data"]], "Distortion correction and Momentum Calibration workflow": [[16, "Distortion-correction-and-Momentum-Calibration-workflow"]], "Distortion correction": [[16, "Distortion-correction"]], "1. step:": [[16, "1.-step:"]], "2. Step:": [[16, "2.-Step:"], [16, "id6"], [16, "id10"]], "3. Step:": [[16, "3.-Step:"], [16, "id11"]], "Optional (Step 3a):": [[16, "Optional-(Step-3a):"], [16, "id12"]], "4. Step:": [[16, "4.-Step:"], [16, "id13"]], "5. Step:": [[16, "5.-Step:"]], "Momentum calibration workflow": [[16, "Momentum-calibration-workflow"]], "1. Step:": [[16, "1.-Step:"], [16, "id9"]], "Optional (Step 1a):": [[16, "Optional-(Step-1a):"], [16, "id7"]], "Energy Correction and Calibration workflow": [[16, "Energy-Correction-and-Calibration-workflow"]], "Energy Correction (optional)": [[16, "Energy-Correction-(optional)"]], "1st step:": [[16, "1st-step:"]], "2. Step": [[16, "2.-Step"]], "Energy calibration": [[16, "Energy-calibration"]], "4. Delay calibration:": [[16, "4.-Delay-calibration:"]], "5. Visualization of calibrated histograms": [[16, "5.-Visualization-of-calibrated-histograms"]], "Define the binning ranges and compute calibrated data volume": [[16, "Define-the-binning-ranges-and-compute-calibrated-data-volume"], [19, "Define-the-binning-ranges-and-compute-calibrated-data-volume"]], "Some visualization:": [[16, "Some-visualization:"], [19, "Some-visualization:"]], "Binning with metadata generation, and storing into a NeXus file": [[17, "Binning-with-metadata-generation,-and-storing-into-a-NeXus-file"]], "Compute final data volume": [[17, "Compute-final-data-volume"]], "Tutorial for binning data from the HEXTOF instrument at FLASH": [[18, "Tutorial-for-binning-data-from-the-HEXTOF-instrument-at-FLASH"]], "Preparation": [[18, "Preparation"]], "Import necessary libraries": [[18, "Import-necessary-libraries"]], "Get data paths": [[18, "Get-data-paths"]], "Config setup": [[18, "Config-setup"]], "cleanup previous config files": [[18, "cleanup-previous-config-files"]], "Load a chessy sample run": [[18, "Load-a-chessy-sample-run"]], "Generate the Processor instance": [[18, "Generate-the-Processor-instance"]], "Add Jitter": [[18, "Add-Jitter"]], "inspect the dataframe": [[18, "inspect-the-dataframe"]], "Visualizing event histograms": [[18, "Visualizing-event-histograms"]], "visualize the result": [[18, "visualize-the-result"]], "Optical Spot Profile": [[18, "Optical-Spot-Profile"]], "Energy Calibration": [[18, "Energy-Calibration"]], "sector alignment": [[18, "sector-alignment"]], "time-of-flight spectrum": [[18, "time-of-flight-spectrum"]], "find calibration parameters": [[18, "find-calibration-parameters"]], "generate the energy axis": [[18, "generate-the-energy-axis"]], "Bin in energy": [[18, "Bin-in-energy"]], "correct offsets": [[18, "correct-offsets"]], "save the calibration parameters": [[18, "save-the-calibration-parameters"]], "Correct delay axis": [[18, "Correct-delay-axis"]], "Run the workflow from the config file": [[18, "Run-the-workflow-from-the-config-file"]], "plot the delayStage values": [[18, "plot-the-delayStage-values"]], "bin in the corrected delay axis": [[18, "bin-in-the-corrected-delay-axis"]], "save parameters": [[18, "save-parameters"]], "Run workflow entirely from config.": [[18, "Run-workflow-entirely-from-config."]], "Compute the results": [[18, "Compute-the-results"]], "Save results": [[18, "Save-results"]], "Binning of temperature-dependent ARPES data using time-stamped external temperature data": [[19, "Binning-of-temperature-dependent-ARPES-data-using-time-stamped-external-temperature-data"]], "Distortion correction with orthorhombic symmetry": [[20, "Distortion-correction-with-orthorhombic-symmetry"]], "Feature definition:": [[20, "Feature-definition:"]], "Spline-warp generation:": [[20, "Spline-warp-generation:"]], "Momentum calibration with orthorhombic axes": [[20, "Momentum-calibration-with-orthorhombic-axes"]], "Bin the top of the valence band": [[20, "Bin-the-top-of-the-valence-band"]], "Correct use of Jittering": [[21, "Correct-use-of-Jittering"]], "Configuration": [[23, "configuration"]], "Default configuration settings": [[23, "default-configuration-settings"]], "Example configuration file for mpes (METIS momentum microscope at FHI-Berlin)": [[23, "example-configuration-file-for-mpes-metis-momentum-microscope-at-fhi-berlin"]], "Example configuration file for flash (HEXTOF momentum microscope at FLASH, Desy)": [[23, "example-configuration-file-for-flash-hextof-momentum-microscope-at-flash-desy"]], "User Guide": [[24, "user-guide"]], "Installing SED": [[24, null]], "Basic concepts": [[24, null]], "Advanced Topics": [[24, null]], "Installation": [[25, "installation"]], "Development version": [[25, "development-version"]], "Workflows": [[26, "workflows"]]}, "indexentries": {"bin_centers_to_bin_edges() (in module sed.binning.utils)": [[5, "sed.binning.utils.bin_centers_to_bin_edges"]], "bin_dataframe() (in module sed.binning)": [[5, "sed.binning.bin_dataframe"]], "bin_edges_to_bin_centers() (in module sed.binning.utils)": [[5, "sed.binning.utils.bin_edges_to_bin_centers"]], "bin_partition() (in module sed.binning)": [[5, "sed.binning.bin_partition"]], "binsearch() (in module sed.binning.numba_bin)": [[5, "sed.binning.numba_bin.binsearch"]], "module": [[5, "module-sed.binning"], [5, "module-sed.binning.numba_bin"], [5, "module-sed.binning.utils"], [6, "module-sed.calibrator.delay"], [6, "module-sed.calibrator.energy"], [6, "module-sed.calibrator.momentum"], [7, "module-sed.core.config"], [8, "module-sed.core"], [9, "module-sed.dataset.dataset"], [10, "module-sed.core.dfops"], [11, "module-sed.diagnostics"], [12, "module-sed.io"], [13, "module-sed.loader.base.loader"], [13, "module-sed.loader.flash.loader"], [13, "module-sed.loader.flash.metadata"], [13, "module-sed.loader.generic.loader"], [13, "module-sed.loader.loader_interface"], [13, "module-sed.loader.mirrorutil"], [13, "module-sed.loader.mpes.loader"], [13, 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"sed.calibrator.delay.DelayCalibrator.add_offsets"]], "add_offsets() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.add_offsets"]], "add_ranges() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.add_ranges"]], "adjust_energy_correction() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.adjust_energy_correction"]], "adjust_ranges() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.adjust_ranges"]], "align_dld_sectors() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.align_dld_sectors"]], "append_delay_axis() (sed.calibrator.delay.delaycalibrator method)": [[6, "sed.calibrator.delay.DelayCalibrator.append_delay_axis"]], "append_energy_axis() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.append_energy_axis"]], "append_k_axis() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.append_k_axis"]], "append_tof_ns_axis() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.append_tof_ns_axis"]], "apply_correction() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.apply_correction"]], "apply_corrections() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.apply_corrections"]], "apply_dfield() (in module sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.apply_dfield"]], "apply_energy_correction() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.apply_energy_correction"]], "bin_data() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.bin_data"]], "calc_geometric_distances() 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"sed.calibrator.energy.correction_function"]], "detector_coordinates_2_k_coordinates() (in module sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.detector_coordinates_2_k_coordinates"]], "dictmerge() (in module sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.dictmerge"]], "dup (sed.calibrator.energy.energycalibrator property)": [[6, "sed.calibrator.energy.EnergyCalibrator.dup"]], "extract_bias() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.extract_bias"]], "extract_delay_stage_parameters() (in module sed.calibrator.delay)": [[6, "sed.calibrator.delay.extract_delay_stage_parameters"]], "feature_extract() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.feature_extract"]], "feature_extract() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.feature_extract"]], "feature_select() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.feature_select"]], "features (sed.calibrator.momentum.momentumcorrector property)": [[6, "sed.calibrator.momentum.MomentumCorrector.features"]], "find_correspondence() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.find_correspondence"]], "find_nearest() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.find_nearest"]], "fit_energy_calibration() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.fit_energy_calibration"]], "gather_calibration_metadata() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.gather_calibration_metadata"]], "gather_calibration_metadata() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.gather_calibration_metadata"]], "gather_correction_metadata() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.gather_correction_metadata"]], "gather_correction_metadata() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.gather_correction_metadata"]], "generate_inverse_dfield() (in module sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.generate_inverse_dfield"]], "load_data() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.load_data"]], "load_data() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.load_data"]], "load_dfield() (in module sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.load_dfield"]], "mm_to_ps() (in module sed.calibrator.delay)": [[6, "sed.calibrator.delay.mm_to_ps"]], "normalize() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.normalize"]], "normspec() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.normspec"]], "nranges (sed.calibrator.energy.energycalibrator property)": [[6, 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"sed.calibrator.momentum": [[6, "module-sed.calibrator.momentum"]], "select_k_range() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.select_k_range"]], "select_slice() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.select_slice"]], "select_slicer() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.select_slicer"]], "spline_warp_estimate() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.spline_warp_estimate"]], "symscores (sed.calibrator.momentum.momentumcorrector property)": [[6, "sed.calibrator.momentum.MomentumCorrector.symscores"]], "tof2ev() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.tof2ev"]], "tof2evpoly() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.tof2evpoly"]], "tof2ns() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.tof2ns"]], "update_deformation() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.update_deformation"]], "view() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.view"]], "view() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.view"]], "complete_dictionary() (in module sed.core.config)": [[7, "sed.core.config.complete_dictionary"]], "load_config() (in module sed.core.config)": [[7, "sed.core.config.load_config"]], "parse_config() (in module sed.core.config)": [[7, "sed.core.config.parse_config"]], "save_config() (in module sed.core.config)": [[7, "sed.core.config.save_config"]], "sed.core.config": [[7, "module-sed.core.config"]], "sedprocessor (class in sed.core)": [[8, "sed.core.SedProcessor"]], "add_attribute() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.add_attribute"]], "add_delay_offset() 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"sed.core.SedProcessor.append_tof_ns_axis"]], "apply_energy_correction() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.apply_energy_correction"]], "apply_momentum_calibration() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.apply_momentum_calibration"]], "apply_momentum_correction() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.apply_momentum_correction"]], "attributes (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.attributes"]], "bin_and_load_momentum_calibration() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.bin_and_load_momentum_calibration"]], "binned (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.binned"]], "calibrate_delay_axis() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.calibrate_delay_axis"]], "calibrate_energy_axis() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.calibrate_energy_axis"]], "calibrate_momentum_axes() (sed.core.sedprocessor method)": [[8, 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"save_energy_correction() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_energy_correction"]], "save_energy_offset() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_energy_offset"]], "save_momentum_calibration() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_momentum_calibration"]], "save_splinewarp() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_splinewarp"]], "save_transformations() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_transformations"]], "save_workflow_params() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_workflow_params"]], "sed.core": [[8, "module-sed.core"]], "timed_dataframe (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.timed_dataframe"]], "view_event_histogram() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.view_event_histogram"]], "dataset (class in sed.dataset.dataset)": [[9, "sed.dataset.dataset.Dataset"]], "datasetsmanager (class in sed.dataset.dataset)": [[9, "sed.dataset.dataset.DatasetsManager"]], "filename (sed.dataset.dataset.datasetsmanager attribute)": [[9, "sed.dataset.dataset.DatasetsManager.FILENAME"]], "name (sed.dataset.dataset.datasetsmanager attribute)": [[9, "sed.dataset.dataset.DatasetsManager.NAME"]], "add() (sed.dataset.dataset.datasetsmanager static method)": [[9, "sed.dataset.dataset.DatasetsManager.add"]], "available (sed.dataset.dataset.dataset property)": [[9, "sed.dataset.dataset.Dataset.available"]], "data_name (sed.dataset.dataset.dataset property)": [[9, "sed.dataset.dataset.Dataset.data_name"]], "existing_data_paths (sed.dataset.dataset.dataset property)": [[9, "sed.dataset.dataset.Dataset.existing_data_paths"]], "get() (sed.dataset.dataset.dataset method)": [[9, "sed.dataset.dataset.Dataset.get"]], "json_path (sed.dataset.dataset.datasetsmanager attribute)": [[9, "sed.dataset.dataset.DatasetsManager.json_path"]], "load_datasets_dict() (sed.dataset.dataset.datasetsmanager static method)": [[9, "sed.dataset.dataset.DatasetsManager.load_datasets_dict"]], "remove() (sed.dataset.dataset.dataset method)": [[9, "sed.dataset.dataset.Dataset.remove"]], "remove() (sed.dataset.dataset.datasetsmanager static method)": [[9, "sed.dataset.dataset.DatasetsManager.remove"]], "sed.dataset.dataset": [[9, "module-sed.dataset.dataset"]], "add_time_stamped_data() (in module sed.core.dfops)": [[10, "sed.core.dfops.add_time_stamped_data"]], "apply_filter() (in module sed.core.dfops)": [[10, "sed.core.dfops.apply_filter"]], "apply_jitter() (in module sed.core.dfops)": [[10, "sed.core.dfops.apply_jitter"]], "backward_fill_lazy() (in module sed.core.dfops)": [[10, "sed.core.dfops.backward_fill_lazy"]], "drop_column() (in module sed.core.dfops)": [[10, "sed.core.dfops.drop_column"]], "forward_fill_lazy() (in module sed.core.dfops)": [[10, "sed.core.dfops.forward_fill_lazy"]], "map_columns_2d() (in module sed.core.dfops)": [[10, 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"sed.loader.flash.loader.FlashLoader"]], "genericloader (class in sed.loader.generic.loader)": [[13, "sed.loader.generic.loader.GenericLoader"]], "loader (in module sed.loader.base.loader)": [[13, "sed.loader.base.loader.LOADER"]], "loader (in module sed.loader.flash.loader)": [[13, "sed.loader.flash.loader.LOADER"]], "loader (in module sed.loader.generic.loader)": [[13, "sed.loader.generic.loader.LOADER"]], "loader (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.LOADER"]], "loader (in module sed.loader.sxp.loader)": [[13, "sed.loader.sxp.loader.LOADER"]], "metadataretriever (class in sed.loader.flash.metadata)": [[13, "sed.loader.flash.metadata.MetadataRetriever"]], "mpesloader (class in sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.MpesLoader"]], "sxploader (class in sed.loader.sxp.loader)": [[13, "sed.loader.sxp.loader.SXPLoader"]], "available_channels (sed.loader.flash.loader.flashloader property)": [[13, "sed.loader.flash.loader.FlashLoader.available_channels"]], "available_channels (sed.loader.sxp.loader.sxploader property)": [[13, "sed.loader.sxp.loader.SXPLoader.available_channels"]], "buffer_file_handler() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.buffer_file_handler"]], "buffer_file_handler() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.buffer_file_handler"]], "cleanup_oldest_scan() (sed.loader.mirrorutil.copytool method)": [[13, "sed.loader.mirrorutil.CopyTool.cleanup_oldest_scan"]], "concatenate_channels() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.concatenate_channels"]], "concatenate_channels() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.concatenate_channels"]], "copy() (sed.loader.mirrorutil.copytool method)": [[13, "sed.loader.mirrorutil.CopyTool.copy"]], "create_buffer_file() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_buffer_file"]], "create_buffer_file() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_buffer_file"]], "create_dataframe_per_channel() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_dataframe_per_channel"]], "create_dataframe_per_channel() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_dataframe_per_channel"]], "create_dataframe_per_electron() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_dataframe_per_electron"]], "create_dataframe_per_electron() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_dataframe_per_electron"]], "create_dataframe_per_file() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_dataframe_per_file"]], "create_dataframe_per_file() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_dataframe_per_file"]], "create_dataframe_per_pulse() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_dataframe_per_pulse"]], "create_dataframe_per_pulse() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_dataframe_per_pulse"]], "create_dataframe_per_train() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_dataframe_per_train"]], "create_dataframe_per_train() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_dataframe_per_train"]], "create_multi_index_per_electron() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_multi_index_per_electron"]], "create_multi_index_per_electron() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_multi_index_per_electron"]], "create_multi_index_per_pulse() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_multi_index_per_pulse"]], "create_multi_index_per_pulse() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_multi_index_per_pulse"]], "create_numpy_array_per_channel() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_numpy_array_per_channel"]], "create_numpy_array_per_channel() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_numpy_array_per_channel"]], "files (sed.loader.flash.loader.flashloader attribute)": [[13, "sed.loader.flash.loader.FlashLoader.files"]], "files (sed.loader.generic.loader.genericloader attribute)": [[13, "sed.loader.generic.loader.GenericLoader.files"]], "files (sed.loader.mpes.loader.mpesloader attribute)": [[13, "sed.loader.mpes.loader.MpesLoader.files"]], "files (sed.loader.sxp.loader.sxploader attribute)": [[13, "sed.loader.sxp.loader.SXPLoader.files"]], "gather_files() (in module sed.loader.utils)": [[13, "sed.loader.utils.gather_files"]], "gather_metadata() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.gather_metadata"]], "gather_metadata() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.gather_metadata"]], "get_archiver_data() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.get_archiver_data"]], "get_attribute() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.get_attribute"]], "get_channels() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.get_channels"]], "get_channels() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.get_channels"]], "get_count_rate() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.get_count_rate"]], "get_count_rate() (sed.loader.base.loader.baseloader method)": [[13, "sed.loader.base.loader.BaseLoader.get_count_rate"]], "get_count_rate() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.get_count_rate"]], "get_count_rate() (sed.loader.generic.loader.genericloader method)": [[13, "sed.loader.generic.loader.GenericLoader.get_count_rate"]], "get_count_rate() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.get_count_rate"]], "get_count_rate() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.get_count_rate"]], "get_elapsed_time() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.get_elapsed_time"]], "get_elapsed_time() (sed.loader.base.loader.baseloader method)": [[13, "sed.loader.base.loader.BaseLoader.get_elapsed_time"]], "get_elapsed_time() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.get_elapsed_time"]], "get_elapsed_time() (sed.loader.generic.loader.genericloader method)": [[13, "sed.loader.generic.loader.GenericLoader.get_elapsed_time"]], "get_elapsed_time() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.get_elapsed_time"]], "get_elapsed_time() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.get_elapsed_time"]], "get_files_from_run_id() (sed.loader.base.loader.baseloader method)": [[13, "sed.loader.base.loader.BaseLoader.get_files_from_run_id"]], "get_files_from_run_id() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.get_files_from_run_id"]], "get_files_from_run_id() (sed.loader.generic.loader.genericloader method)": [[13, "sed.loader.generic.loader.GenericLoader.get_files_from_run_id"]], "get_files_from_run_id() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.get_files_from_run_id"]], "get_files_from_run_id() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.get_files_from_run_id"]], "get_groups_and_aliases() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.get_groups_and_aliases"]], "get_loader() (in module sed.loader.loader_interface)": [[13, "sed.loader.loader_interface.get_loader"]], "get_metadata() (sed.loader.flash.metadata.metadataretriever method)": [[13, "sed.loader.flash.metadata.MetadataRetriever.get_metadata"]], "get_names_of_all_loaders() (in module sed.loader.loader_interface)": [[13, "sed.loader.loader_interface.get_names_of_all_loaders"]], "get_start_and_end_time() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.get_start_and_end_time"]], "get_target_dir() (in module sed.loader.mirrorutil)": [[13, "sed.loader.mirrorutil.get_target_dir"]], "hdf5_to_array() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.hdf5_to_array"]], "hdf5_to_dataframe() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.hdf5_to_dataframe"]], "hdf5_to_timed_array() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.hdf5_to_timed_array"]], "hdf5_to_timed_dataframe() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.hdf5_to_timed_dataframe"]], "initialize_paths() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.initialize_paths"]], "initialize_paths() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.initialize_paths"]], "metadata (sed.loader.flash.loader.flashloader attribute)": [[13, "sed.loader.flash.loader.FlashLoader.metadata"]], "metadata (sed.loader.generic.loader.genericloader attribute)": [[13, "sed.loader.generic.loader.GenericLoader.metadata"]], "metadata (sed.loader.mpes.loader.mpesloader attribute)": [[13, "sed.loader.mpes.loader.MpesLoader.metadata"]], "metadata (sed.loader.sxp.loader.sxploader attribute)": [[13, "sed.loader.sxp.loader.SXPLoader.metadata"]], "mycopy() (in module sed.loader.mirrorutil)": [[13, "sed.loader.mirrorutil.mycopy"]], "mymakedirs() (in module sed.loader.mirrorutil)": [[13, "sed.loader.mirrorutil.mymakedirs"]], "parquet_handler() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.parquet_handler"]], "parquet_handler() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.parquet_handler"]], "parse_h5_keys() (in module sed.loader.utils)": [[13, "sed.loader.utils.parse_h5_keys"]], "parse_metadata() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.parse_metadata"]], "read_dataframe() (sed.loader.base.loader.baseloader method)": [[13, "sed.loader.base.loader.BaseLoader.read_dataframe"]], "read_dataframe() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.read_dataframe"]], "read_dataframe() (sed.loader.generic.loader.genericloader method)": [[13, "sed.loader.generic.loader.GenericLoader.read_dataframe"]], "read_dataframe() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.read_dataframe"]], "read_dataframe() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.read_dataframe"]], "reset_multi_index() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.reset_multi_index"]], "reset_multi_index() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.reset_multi_index"]], "runs (sed.loader.flash.loader.flashloader attribute)": [[13, "sed.loader.flash.loader.FlashLoader.runs"]], "runs (sed.loader.generic.loader.genericloader attribute)": [[13, "sed.loader.generic.loader.GenericLoader.runs"]], "runs (sed.loader.mpes.loader.mpesloader attribute)": [[13, "sed.loader.mpes.loader.MpesLoader.runs"]], "runs (sed.loader.sxp.loader.sxploader attribute)": [[13, "sed.loader.sxp.loader.SXPLoader.runs"]], "sed.loader.base.loader": [[13, "module-sed.loader.base.loader"]], "sed.loader.flash.loader": [[13, "module-sed.loader.flash.loader"]], "sed.loader.flash.metadata": [[13, "module-sed.loader.flash.metadata"]], "sed.loader.generic.loader": [[13, "module-sed.loader.generic.loader"]], "sed.loader.loader_interface": [[13, "module-sed.loader.loader_interface"]], "sed.loader.mirrorutil": [[13, "module-sed.loader.mirrorutil"]], "sed.loader.mpes.loader": [[13, "module-sed.loader.mpes.loader"]], "sed.loader.sxp.loader": [[13, "module-sed.loader.sxp.loader"]], "sed.loader.utils": [[13, "module-sed.loader.utils"]], "size() (sed.loader.mirrorutil.copytool method)": [[13, "sed.loader.mirrorutil.CopyTool.size"]], "split_channel_bitwise() (in module sed.loader.utils)": [[13, "sed.loader.utils.split_channel_bitwise"]], "split_dld_time_from_sector_id() (in module sed.loader.utils)": [[13, "sed.loader.utils.split_dld_time_from_sector_id"]], "supported_file_types (sed.loader.base.loader.baseloader attribute)": [[13, "sed.loader.base.loader.BaseLoader.supported_file_types"]], "supported_file_types (sed.loader.flash.loader.flashloader attribute)": [[13, "sed.loader.flash.loader.FlashLoader.supported_file_types"]], "supported_file_types (sed.loader.generic.loader.genericloader attribute)": [[13, "sed.loader.generic.loader.GenericLoader.supported_file_types"]], "supported_file_types (sed.loader.mpes.loader.mpesloader attribute)": [[13, "sed.loader.mpes.loader.MpesLoader.supported_file_types"]], "supported_file_types (sed.loader.sxp.loader.sxploader attribute)": [[13, "sed.loader.sxp.loader.SXPLoader.supported_file_types"]], "duplicateentryerror": [[14, "sed.core.metadata.DuplicateEntryError"]], "metahandler (class in sed.core.metadata)": [[14, "sed.core.metadata.MetaHandler"]], "add() (sed.core.metadata.metahandler method)": [[14, "sed.core.metadata.MetaHandler.add"]], "metadata (sed.core.metadata.metahandler property)": [[14, "sed.core.metadata.MetaHandler.metadata"]], "sed.core.metadata": [[14, "module-sed.core.metadata"]]}})
\ No newline at end of file
diff --git a/sed/develop/sed/api.html b/sed/develop/sed/api.html
index 9299ac5..98e39a2 100644
--- a/sed/develop/sed/api.html
+++ b/sed/develop/sed/api.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
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@@ -53,7 +52,7 @@
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="Core" href="core.html" />
-    <link rel="prev" title="Tutorial for binning data from the HEXTOF instrument at FLASH" href="../tutorial/4_hextof_workflow.html" />
+    <link rel="prev" title="Workflows" href="../workflows/index.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
   <meta name="docsearch:version" content="0.2.1" />
@@ -466,12 +465,12 @@ <h1>API<a class="headerlink" href="#api" title="Permalink to this heading">#</a>
                   
 <div class="prev-next-area">
     <a class="left-prev"
-       href="../tutorial/4_hextof_workflow.html"
+       href="../workflows/index.html"
        title="previous page">
       <i class="fa-solid fa-angle-left"></i>
       <div class="prev-next-info">
         <p class="prev-next-subtitle">previous</p>
-        <p class="prev-next-title">Tutorial for binning data from the HEXTOF instrument at FLASH</p>
+        <p class="prev-next-title">Workflows</p>
       </div>
     </a>
     <a class="right-next"
diff --git a/sed/develop/sed/binning.html b/sed/develop/sed/binning.html
index d82f694..a652972 100644
--- a/sed/develop/sed/binning.html
+++ b/sed/develop/sed/binning.html
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index 9f7e25c..167e0d5 100644
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index 8927ee6..620e145 100644
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index ffa09dd..3cd98bd 100644
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diff --git a/sed/develop/sed/dataset.html b/sed/develop/sed/dataset.html
index 0ebd731..1b6c05c 100644
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index 6131706..c5fdd3d 100644
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index 39e2b94..e9fe4ed 100644
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diff --git a/sed/develop/sed/metadata.html b/sed/develop/sed/metadata.html
index cea360d..8d5a925 100644
--- a/sed/develop/sed/metadata.html
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@@ -42,7 +42,6 @@
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diff --git a/sed/develop/user_guide/advanced_topics.html b/sed/develop/user_guide/advanced_topics.html
index f1319ac..b940ec2 100644
--- a/sed/develop/user_guide/advanced_topics.html
+++ b/sed/develop/user_guide/advanced_topics.html
@@ -42,7 +42,6 @@
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@@ -52,7 +51,7 @@
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     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="Binning of temperature-dependent ARPES data using time-stamped external temperature data" href="../tutorial/6_binning_with_time-stamped_data.html" />
+    <link rel="next" title="Workflows" href="../workflows/index.html" />
     <link rel="prev" title="Configuration" href="config.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
@@ -361,24 +360,13 @@
 <nav class="bd-docs-nav bd-links"
      aria-label="Section Navigation">
   <p class="bd-links__title" role="heading" aria-level="1">Section Navigation</p>
-  <div class="bd-toc-item navbar-nav"><p aria-level="2" class="caption" role="heading"><span class="caption-text">Installing SED</span></p>
-<ul class="nav bd-sidenav">
+  <div class="bd-toc-item navbar-nav"><ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a></li>
 
 </ul>
-<p aria-level="2" class="caption" role="heading"><span class="caption-text">Basic concepts</span></p>
 <ul class="nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/1_binning_fake_data.html">Binning demonstration on locally generated fake data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/2_conversion_pipeline_for_example_time-resolved_ARPES_data.html">Demonstration of the conversion pipeline using time-resolved ARPES data stored on Zenodo</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/3_metadata_collection_and_export_to_NeXus.html">Binning with metadata generation, and storing into a NeXus file</a></li>
 <li class="toctree-l1"><a class="reference internal" href="config.html">Configuration</a></li>
 </ul>
-<p aria-level="2" class="caption" role="heading"><span class="caption-text">Advanced Topics</span></p>
-<ul class="nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/6_binning_with_time-stamped_data.html">Binning of temperature-dependent ARPES data using time-stamped external temperature data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/7_correcting_orthorhombic_symmetry.html">Distortion correction with orthorhombic symmetry</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/8_jittering_tutorial.html">Correct use of Jittering</a></li>
-</ul>
 </div>
 </nav></div>
     </div>
@@ -447,11 +435,6 @@
                 <article class="bd-article">
                   
   <div class="toctree-wrapper compound">
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/6_binning_with_time-stamped_data.html">Binning of temperature-dependent ARPES data using time-stamped external temperature data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/7_correcting_orthorhombic_symmetry.html">Distortion correction with orthorhombic symmetry</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/8_jittering_tutorial.html">Correct use of Jittering</a></li>
-</ul>
 </div>
 
 
@@ -474,11 +457,11 @@
       </div>
     </a>
     <a class="right-next"
-       href="../tutorial/6_binning_with_time-stamped_data.html"
+       href="../workflows/index.html"
        title="next page">
       <div class="prev-next-info">
         <p class="prev-next-subtitle">next</p>
-        <p class="prev-next-title">Binning of temperature-dependent ARPES data using time-stamped external temperature data</p>
+        <p class="prev-next-title">Workflows</p>
       </div>
       <i class="fa-solid fa-angle-right"></i>
     </a>
diff --git a/sed/develop/user_guide/config.html b/sed/develop/user_guide/config.html
index 39c5167..43b4192 100644
--- a/sed/develop/user_guide/config.html
+++ b/sed/develop/user_guide/config.html
@@ -42,7 +42,6 @@
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     <script>DOCUMENTATION_OPTIONS.pagename = 'user_guide/config';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
@@ -53,7 +52,7 @@
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="&lt;no title&gt;" href="advanced_topics.html" />
-    <link rel="prev" title="Binning with metadata generation, and storing into a NeXus file" href="../tutorial/3_metadata_collection_and_export_to_NeXus.html" />
+    <link rel="prev" title="Installation" href="installation.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
   <meta name="docsearch:version" content="0.2.1" />
@@ -361,24 +360,13 @@
 <nav class="bd-docs-nav bd-links"
      aria-label="Section Navigation">
   <p class="bd-links__title" role="heading" aria-level="1">Section Navigation</p>
-  <div class="bd-toc-item navbar-nav"><p aria-level="2" class="caption" role="heading"><span class="caption-text">Installing SED</span></p>
-<ul class="nav bd-sidenav">
+  <div class="bd-toc-item navbar-nav"><ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a></li>
 
 </ul>
-<p aria-level="2" class="caption" role="heading"><span class="caption-text">Basic concepts</span></p>
 <ul class="current nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/1_binning_fake_data.html">Binning demonstration on locally generated fake data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/2_conversion_pipeline_for_example_time-resolved_ARPES_data.html">Demonstration of the conversion pipeline using time-resolved ARPES data stored on Zenodo</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/3_metadata_collection_and_export_to_NeXus.html">Binning with metadata generation, and storing into a NeXus file</a></li>
 <li class="toctree-l1 current active"><a class="current reference internal" href="#">Configuration</a></li>
 </ul>
-<p aria-level="2" class="caption" role="heading"><span class="caption-text">Advanced Topics</span></p>
-<ul class="nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/6_binning_with_time-stamped_data.html">Binning of temperature-dependent ARPES data using time-stamped external temperature data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/7_correcting_orthorhombic_symmetry.html">Distortion correction with orthorhombic symmetry</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/8_jittering_tutorial.html">Correct use of Jittering</a></li>
-</ul>
 </div>
 </nav></div>
     </div>
@@ -1114,12 +1102,12 @@ <h2>Example configuration file for flash (HEXTOF momentum microscope at FLASH, D
                   
 <div class="prev-next-area">
     <a class="left-prev"
-       href="../tutorial/3_metadata_collection_and_export_to_NeXus.html"
+       href="installation.html"
        title="previous page">
       <i class="fa-solid fa-angle-left"></i>
       <div class="prev-next-info">
         <p class="prev-next-subtitle">previous</p>
-        <p class="prev-next-title">Binning with metadata generation, and storing into a NeXus file</p>
+        <p class="prev-next-title">Installation</p>
       </div>
     </a>
     <a class="right-next"
diff --git a/sed/develop/user_guide/index.html b/sed/develop/user_guide/index.html
index a87b8a5..b4d2778 100644
--- a/sed/develop/user_guide/index.html
+++ b/sed/develop/user_guide/index.html
@@ -43,7 +43,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
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     <script>DOCUMENTATION_OPTIONS.pagename = 'user_guide/index';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
@@ -362,24 +361,13 @@
 <nav class="bd-docs-nav bd-links"
      aria-label="Section Navigation">
   <p class="bd-links__title" role="heading" aria-level="1">Section Navigation</p>
-  <div class="bd-toc-item navbar-nav"><p aria-level="2" class="caption" role="heading"><span class="caption-text">Installing SED</span></p>
-<ul class="nav bd-sidenav">
+  <div class="bd-toc-item navbar-nav"><ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a></li>
 
 </ul>
-<p aria-level="2" class="caption" role="heading"><span class="caption-text">Basic concepts</span></p>
 <ul class="nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/1_binning_fake_data.html">Binning demonstration on locally generated fake data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/2_conversion_pipeline_for_example_time-resolved_ARPES_data.html">Demonstration of the conversion pipeline using time-resolved ARPES data stored on Zenodo</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/3_metadata_collection_and_export_to_NeXus.html">Binning with metadata generation, and storing into a NeXus file</a></li>
 <li class="toctree-l1"><a class="reference internal" href="config.html">Configuration</a></li>
 </ul>
-<p aria-level="2" class="caption" role="heading"><span class="caption-text">Advanced Topics</span></p>
-<ul class="nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/6_binning_with_time-stamped_data.html">Binning of temperature-dependent ARPES data using time-stamped external temperature data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/7_correcting_orthorhombic_symmetry.html">Distortion correction with orthorhombic symmetry</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/8_jittering_tutorial.html">Correct use of Jittering</a></li>
-</ul>
 </div>
 </nav></div>
     </div>
@@ -446,30 +434,28 @@
                   
   <section id="user-guide">
 <h1>User Guide<a class="headerlink" href="#user-guide" title="Permalink to this heading">#</a></h1>
+<section id="installing-sed">
+<h2>Installing SED<a class="headerlink" href="#installing-sed" title="Permalink to this heading">#</a></h2>
 <div class="toctree-wrapper compound">
-<p aria-level="2" class="caption" role="heading"><span class="caption-text">Installing SED</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="installation.html#development-version">Development version</a></li>
 </ul>
 </div>
+</section>
+<section id="basic-concepts">
+<h2>Basic concepts<a class="headerlink" href="#basic-concepts" title="Permalink to this heading">#</a></h2>
 <div class="toctree-wrapper compound">
-<p aria-level="2" class="caption" role="heading"><span class="caption-text">Basic concepts</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/1_binning_fake_data.html">Binning demonstration on locally generated fake data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/2_conversion_pipeline_for_example_time-resolved_ARPES_data.html">Demonstration of the conversion pipeline using time-resolved ARPES data stored on Zenodo</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/3_metadata_collection_and_export_to_NeXus.html">Binning with metadata generation, and storing into a NeXus file</a></li>
 <li class="toctree-l1"><a class="reference internal" href="config.html">Configuration</a></li>
 </ul>
 </div>
+</section>
+<section id="advanced-topics">
+<h2>Advanced Topics<a class="headerlink" href="#advanced-topics" title="Permalink to this heading">#</a></h2>
 <div class="toctree-wrapper compound">
-<p aria-level="2" class="caption" role="heading"><span class="caption-text">Advanced Topics</span></p>
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/6_binning_with_time-stamped_data.html">Binning of temperature-dependent ARPES data using time-stamped external temperature data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/7_correcting_orthorhombic_symmetry.html">Distortion correction with orthorhombic symmetry</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/8_jittering_tutorial.html">Correct use of Jittering</a></li>
-</ul>
 </div>
+</section>
 </section>
 
 
@@ -511,6 +497,20 @@ <h1>User Guide<a class="headerlink" href="#user-guide" title="Permalink to this
                 <div id="pst-secondary-sidebar" class="bd-sidebar-secondary bd-toc"><div class="sidebar-secondary-items sidebar-secondary__inner">
 
 
+  <div class="sidebar-secondary-item">
+<div
+    id="pst-page-navigation-heading-2"
+    class="page-toc tocsection onthispage">
+    <i class="fa-solid fa-list"></i> On this page
+  </div>
+  <nav class="bd-toc-nav page-toc" aria-labelledby="pst-page-navigation-heading-2">
+    <ul class="visible nav section-nav flex-column">
+<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#installing-sed">Installing SED</a></li>
+<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#basic-concepts">Basic concepts</a></li>
+<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#advanced-topics">Advanced Topics</a></li>
+</ul>
+  </nav></div>
+
   <div class="sidebar-secondary-item">
 
   <div class="tocsection sourcelink">
diff --git a/sed/develop/user_guide/installation.html b/sed/develop/user_guide/installation.html
index 586b2a4..24560ae 100644
--- a/sed/develop/user_guide/installation.html
+++ b/sed/develop/user_guide/installation.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'user_guide/installation';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
@@ -52,7 +51,7 @@
         </script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="Binning demonstration on locally generated fake data" href="../tutorial/1_binning_fake_data.html" />
+    <link rel="next" title="Configuration" href="config.html" />
     <link rel="prev" title="User Guide" href="index.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
@@ -361,24 +360,13 @@
 <nav class="bd-docs-nav bd-links"
      aria-label="Section Navigation">
   <p class="bd-links__title" role="heading" aria-level="1">Section Navigation</p>
-  <div class="bd-toc-item navbar-nav"><p aria-level="2" class="caption" role="heading"><span class="caption-text">Installing SED</span></p>
-<ul class="current nav bd-sidenav">
+  <div class="bd-toc-item navbar-nav"><ul class="current nav bd-sidenav">
 <li class="toctree-l1 current active"><a class="current reference internal" href="#">Installation</a></li>
 
 </ul>
-<p aria-level="2" class="caption" role="heading"><span class="caption-text">Basic concepts</span></p>
 <ul class="nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/1_binning_fake_data.html">Binning demonstration on locally generated fake data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/2_conversion_pipeline_for_example_time-resolved_ARPES_data.html">Demonstration of the conversion pipeline using time-resolved ARPES data stored on Zenodo</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/3_metadata_collection_and_export_to_NeXus.html">Binning with metadata generation, and storing into a NeXus file</a></li>
 <li class="toctree-l1"><a class="reference internal" href="config.html">Configuration</a></li>
 </ul>
-<p aria-level="2" class="caption" role="heading"><span class="caption-text">Advanced Topics</span></p>
-<ul class="nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/6_binning_with_time-stamped_data.html">Binning of temperature-dependent ARPES data using time-stamped external temperature data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/7_correcting_orthorhombic_symmetry.html">Distortion correction with orthorhombic symmetry</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/8_jittering_tutorial.html">Correct use of Jittering</a></li>
-</ul>
 </div>
 </nav></div>
     </div>
@@ -544,11 +532,11 @@ <h1>Development version<a class="headerlink" href="#development-version" title="
       </div>
     </a>
     <a class="right-next"
-       href="../tutorial/1_binning_fake_data.html"
+       href="config.html"
        title="next page">
       <div class="prev-next-info">
         <p class="prev-next-subtitle">next</p>
-        <p class="prev-next-title">Binning demonstration on locally generated fake data</p>
+        <p class="prev-next-title">Configuration</p>
       </div>
       <i class="fa-solid fa-angle-right"></i>
     </a>
diff --git a/sed/develop/workflows/index.html b/sed/develop/workflows/index.html
index 8f99c52..41d30fc 100644
--- a/sed/develop/workflows/index.html
+++ b/sed/develop/workflows/index.html
@@ -43,7 +43,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'workflows/index';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
@@ -53,8 +52,8 @@
         </script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="Tutorial for binning data from the HEXTOF instrument at FLASH" href="../tutorial/4_hextof_workflow.html" />
-    <link rel="prev" title="Correct use of Jittering" href="../tutorial/8_jittering_tutorial.html" />
+    <link rel="next" title="API" href="../sed/api.html" />
+    <link rel="prev" title="&lt;no title&gt;" href="../user_guide/advanced_topics.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
   <meta name="docsearch:version" content="0.2.1" />
@@ -362,10 +361,7 @@
 <nav class="bd-docs-nav bd-links"
      aria-label="Section Navigation">
   <p class="bd-links__title" role="heading" aria-level="1">Section Navigation</p>
-  <div class="bd-toc-item navbar-nav"><ul class="nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/4_hextof_workflow.html">Tutorial for binning data from the HEXTOF instrument at FLASH</a></li>
-</ul>
-</div>
+  <div class="bd-toc-item navbar-nav"></div>
 </nav></div>
     </div>
   
@@ -432,50 +428,6 @@
   <section id="workflows">
 <h1>Workflows<a class="headerlink" href="#workflows" title="Permalink to this heading">#</a></h1>
 <div class="toctree-wrapper compound">
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/4_hextof_workflow.html">Tutorial for binning data from the HEXTOF instrument at FLASH</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Preparation">Preparation</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Import-necessary-libraries">Import necessary libraries</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Get-data-paths">Get data paths</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Config-setup">Config setup</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#cleanup-previous-config-files">cleanup previous config files</a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Load-a-chessy-sample-run">Load a chessy sample run</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Generate-the-Processor-instance">Generate the Processor instance</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Add-Jitter">Add Jitter</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#inspect-the-dataframe">inspect the dataframe</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Visualizing-event-histograms">Visualizing event histograms</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Binning">Binning</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#visualize-the-result">visualize the result</a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Optical-Spot-Profile">Optical Spot Profile</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Energy-Calibration">Energy Calibration</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#sector-alignment">sector alignment</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#time-of-flight-spectrum">time-of-flight spectrum</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#find-calibration-parameters">find calibration parameters</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#generate-the-energy-axis">generate the energy axis</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Bin-in-energy">Bin in energy</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#correct-offsets">correct offsets</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#save-the-calibration-parameters">save the calibration parameters</a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Correct-delay-axis">Correct delay axis</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Run-the-workflow-from-the-config-file">Run the workflow from the config file</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#plot-the-delayStage-values">plot the delayStage values</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#bin-in-the-corrected-delay-axis">bin in the corrected delay axis</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#save-parameters">save parameters</a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Run-workflow-entirely-from-config.">Run workflow entirely from config.</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Compute-the-results">Compute the results</a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Save-results">Save results</a></li>
-</ul>
-</li>
-</ul>
 </div>
 </section>
 
@@ -490,20 +442,20 @@ <h1>Workflows<a class="headerlink" href="#workflows" title="Permalink to this he
                   
 <div class="prev-next-area">
     <a class="left-prev"
-       href="../tutorial/8_jittering_tutorial.html"
+       href="../user_guide/advanced_topics.html"
        title="previous page">
       <i class="fa-solid fa-angle-left"></i>
       <div class="prev-next-info">
         <p class="prev-next-subtitle">previous</p>
-        <p class="prev-next-title">Correct use of Jittering</p>
+        <p class="prev-next-title">&lt;no title&gt;</p>
       </div>
     </a>
     <a class="right-next"
-       href="../tutorial/4_hextof_workflow.html"
+       href="../sed/api.html"
        title="next page">
       <div class="prev-next-info">
         <p class="prev-next-subtitle">next</p>
-        <p class="prev-next-title">Tutorial for binning data from the HEXTOF instrument at FLASH</p>
+        <p class="prev-next-title">API</p>
       </div>
       <i class="fa-solid fa-angle-right"></i>
     </a>
diff --git a/sed/switcher.json b/sed/switcher.json
index de2ca12..0e09d3c 100644
--- a/sed/switcher.json
+++ b/sed/switcher.json
@@ -17,7 +17,7 @@
   },
   {
     "name": "develop",
-    "version": "v0.1.9",
+    "version": "0.2.1",
     "url": "https://opencompes.github.io/docs/sed/develop"
   }
 ]
\ No newline at end of file