From 404b41041ff7825f5b6779baa4ca1f751567af88 Mon Sep 17 00:00:00 2001
From: github-actions <github-actions@github.com>
Date: Fri, 25 Oct 2024 12:53:12 +0000
Subject: [PATCH] Update documentation

---
 sed/develop/_modules/index.html               |   1 -
 sed/develop/_modules/sed/binning/binning.html |   1 -
 .../_modules/sed/binning/numba_bin.html       |   1 -
 sed/develop/_modules/sed/binning/utils.html   |   1 -
 .../_modules/sed/calibrator/delay.html        |   1 -
 .../_modules/sed/calibrator/energy.html       |   1 -
 .../_modules/sed/calibrator/momentum.html     |   1 -
 sed/develop/_modules/sed/core/config.html     |   1 -
 sed/develop/_modules/sed/core/dfops.html      |   1 -
 sed/develop/_modules/sed/core/metadata.html   |   1 -
 sed/develop/_modules/sed/core/processor.html  |   1 -
 sed/develop/_modules/sed/dataset/dataset.html |   1 -
 sed/develop/_modules/sed/diagnostics.html     |   1 -
 sed/develop/_modules/sed/io/hdf5.html         |   1 -
 sed/develop/_modules/sed/io/nexus.html        |   1 -
 sed/develop/_modules/sed/io/tiff.html         |   1 -
 .../_modules/sed/loader/base/loader.html      |   1 -
 .../_modules/sed/loader/flash/loader.html     |   1 -
 .../_modules/sed/loader/flash/metadata.html   |   1 -
 .../_modules/sed/loader/generic/loader.html   |   1 -
 .../_modules/sed/loader/loader_interface.html |   1 -
 .../_modules/sed/loader/mirrorutil.html       |   1 -
 .../_modules/sed/loader/mpes/loader.html      |   1 -
 .../_modules/sed/loader/sxp/loader.html       |   1 -
 sed/develop/_modules/sed/loader/utils.html    |   1 -
 sed/develop/genindex.html                     |   1 -
 sed/develop/index.html                        |   4 +-
 sed/develop/misc/contributing.html            |   1 -
 sed/develop/misc/contribution.html            |   1 -
 sed/develop/misc/maintain.html                |   1 -
 sed/develop/objects.inv                       | Bin 9740 -> 7538 bytes
 sed/develop/py-modindex.html                  |   1 -
 sed/develop/search.html                       |   1 -
 sed/develop/searchindex.js                    |   2 +-
 sed/develop/sed/api.html                      |   7 +-
 sed/develop/sed/binning.html                  |   1 -
 sed/develop/sed/calibrator.html               |   1 -
 sed/develop/sed/config.html                   |   1 -
 sed/develop/sed/core.html                     |   1 -
 sed/develop/sed/dataset.html                  |   1 -
 sed/develop/sed/dfops.html                    |   1 -
 sed/develop/sed/diagnostic.html               |   1 -
 sed/develop/sed/io.html                       |   1 -
 sed/develop/sed/loader.html                   |   1 -
 sed/develop/sed/metadata.html                 |   1 -
 sed/develop/user_guide/advanced_topics.html   |  20 +-----
 sed/develop/user_guide/config.html            |  15 +----
 sed/develop/user_guide/index.html             |  17 -----
 sed/develop/user_guide/installation.html      |  15 +----
 sed/develop/workflows/index.html              |  62 ++----------------
 50 files changed, 21 insertions(+), 162 deletions(-)

diff --git a/sed/develop/_modules/index.html b/sed/develop/_modules/index.html
index cbd4839..6894892 100644
--- a/sed/develop/_modules/index.html
+++ b/sed/develop/_modules/index.html
@@ -41,7 +41,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/index';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/binning/binning.html b/sed/develop/_modules/sed/binning/binning.html
index dae0016..89ced35 100644
--- a/sed/develop/_modules/sed/binning/binning.html
+++ b/sed/develop/_modules/sed/binning/binning.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/binning/binning';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/binning/numba_bin.html b/sed/develop/_modules/sed/binning/numba_bin.html
index 1a9814f..832f130 100644
--- a/sed/develop/_modules/sed/binning/numba_bin.html
+++ b/sed/develop/_modules/sed/binning/numba_bin.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/binning/numba_bin';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/binning/utils.html b/sed/develop/_modules/sed/binning/utils.html
index 0f5972f..b825b97 100644
--- a/sed/develop/_modules/sed/binning/utils.html
+++ b/sed/develop/_modules/sed/binning/utils.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/binning/utils';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/calibrator/delay.html b/sed/develop/_modules/sed/calibrator/delay.html
index e3fd2a7..7a50704 100644
--- a/sed/develop/_modules/sed/calibrator/delay.html
+++ b/sed/develop/_modules/sed/calibrator/delay.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/calibrator/delay';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/calibrator/energy.html b/sed/develop/_modules/sed/calibrator/energy.html
index 1051e39..4ab330b 100644
--- a/sed/develop/_modules/sed/calibrator/energy.html
+++ b/sed/develop/_modules/sed/calibrator/energy.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/calibrator/energy';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/calibrator/momentum.html b/sed/develop/_modules/sed/calibrator/momentum.html
index aee34d1..539c01e 100644
--- a/sed/develop/_modules/sed/calibrator/momentum.html
+++ b/sed/develop/_modules/sed/calibrator/momentum.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/calibrator/momentum';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/core/config.html b/sed/develop/_modules/sed/core/config.html
index 97e7db5..6849881 100644
--- a/sed/develop/_modules/sed/core/config.html
+++ b/sed/develop/_modules/sed/core/config.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/core/config';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/core/dfops.html b/sed/develop/_modules/sed/core/dfops.html
index 52fcc1b..abb4fd0 100644
--- a/sed/develop/_modules/sed/core/dfops.html
+++ b/sed/develop/_modules/sed/core/dfops.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/core/dfops';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/core/metadata.html b/sed/develop/_modules/sed/core/metadata.html
index 8f202e4..ce8be36 100644
--- a/sed/develop/_modules/sed/core/metadata.html
+++ b/sed/develop/_modules/sed/core/metadata.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/core/metadata';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/core/processor.html b/sed/develop/_modules/sed/core/processor.html
index 93bea41..8863f7f 100644
--- a/sed/develop/_modules/sed/core/processor.html
+++ b/sed/develop/_modules/sed/core/processor.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/core/processor';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/dataset/dataset.html b/sed/develop/_modules/sed/dataset/dataset.html
index b8404bf..05a4a62 100644
--- a/sed/develop/_modules/sed/dataset/dataset.html
+++ b/sed/develop/_modules/sed/dataset/dataset.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/dataset/dataset';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/diagnostics.html b/sed/develop/_modules/sed/diagnostics.html
index 4d12faa..7925ad7 100644
--- a/sed/develop/_modules/sed/diagnostics.html
+++ b/sed/develop/_modules/sed/diagnostics.html
@@ -41,7 +41,6 @@
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/diagnostics';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/io/hdf5.html b/sed/develop/_modules/sed/io/hdf5.html
index 3d6e20e..684d486 100644
--- a/sed/develop/_modules/sed/io/hdf5.html
+++ b/sed/develop/_modules/sed/io/hdf5.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/io/hdf5';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/io/nexus.html b/sed/develop/_modules/sed/io/nexus.html
index 9c3b9f2..55aadfe 100644
--- a/sed/develop/_modules/sed/io/nexus.html
+++ b/sed/develop/_modules/sed/io/nexus.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/io/nexus';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/io/tiff.html b/sed/develop/_modules/sed/io/tiff.html
index 6588d42..e7f7bba 100644
--- a/sed/develop/_modules/sed/io/tiff.html
+++ b/sed/develop/_modules/sed/io/tiff.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/io/tiff';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/loader/base/loader.html b/sed/develop/_modules/sed/loader/base/loader.html
index a592137..47627c3 100644
--- a/sed/develop/_modules/sed/loader/base/loader.html
+++ b/sed/develop/_modules/sed/loader/base/loader.html
@@ -41,7 +41,6 @@
     <script src="../../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/loader/base/loader';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/loader/flash/loader.html b/sed/develop/_modules/sed/loader/flash/loader.html
index 6115625..1910283 100644
--- a/sed/develop/_modules/sed/loader/flash/loader.html
+++ b/sed/develop/_modules/sed/loader/flash/loader.html
@@ -41,7 +41,6 @@
     <script src="../../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/loader/flash/loader';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/loader/flash/metadata.html b/sed/develop/_modules/sed/loader/flash/metadata.html
index 3987139..45e121e 100644
--- a/sed/develop/_modules/sed/loader/flash/metadata.html
+++ b/sed/develop/_modules/sed/loader/flash/metadata.html
@@ -41,7 +41,6 @@
     <script src="../../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/loader/flash/metadata';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/loader/generic/loader.html b/sed/develop/_modules/sed/loader/generic/loader.html
index f7e6dcf..b8377e3 100644
--- a/sed/develop/_modules/sed/loader/generic/loader.html
+++ b/sed/develop/_modules/sed/loader/generic/loader.html
@@ -41,7 +41,6 @@
     <script src="../../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/loader/generic/loader';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/loader/loader_interface.html b/sed/develop/_modules/sed/loader/loader_interface.html
index 77626aa..9b178d0 100644
--- a/sed/develop/_modules/sed/loader/loader_interface.html
+++ b/sed/develop/_modules/sed/loader/loader_interface.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/loader/loader_interface';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/loader/mirrorutil.html b/sed/develop/_modules/sed/loader/mirrorutil.html
index 7456c10..56471aa 100644
--- a/sed/develop/_modules/sed/loader/mirrorutil.html
+++ b/sed/develop/_modules/sed/loader/mirrorutil.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/loader/mirrorutil';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/loader/mpes/loader.html b/sed/develop/_modules/sed/loader/mpes/loader.html
index 6422614..8440390 100644
--- a/sed/develop/_modules/sed/loader/mpes/loader.html
+++ b/sed/develop/_modules/sed/loader/mpes/loader.html
@@ -41,7 +41,6 @@
     <script src="../../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/loader/mpes/loader';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/loader/sxp/loader.html b/sed/develop/_modules/sed/loader/sxp/loader.html
index 0368369..8cd0d70 100644
--- a/sed/develop/_modules/sed/loader/sxp/loader.html
+++ b/sed/develop/_modules/sed/loader/sxp/loader.html
@@ -41,7 +41,6 @@
     <script src="../../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/loader/sxp/loader';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/_modules/sed/loader/utils.html b/sed/develop/_modules/sed/loader/utils.html
index db67eae..2f459d3 100644
--- a/sed/develop/_modules/sed/loader/utils.html
+++ b/sed/develop/_modules/sed/loader/utils.html
@@ -41,7 +41,6 @@
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/sed/loader/utils';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/genindex.html b/sed/develop/genindex.html
index 4c008e3..08ea060 100644
--- a/sed/develop/genindex.html
+++ b/sed/develop/genindex.html
@@ -41,7 +41,6 @@
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'genindex';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/index.html b/sed/develop/index.html
index 64ebe74..7f1f2a2 100644
--- a/sed/develop/index.html
+++ b/sed/develop/index.html
@@ -43,7 +43,6 @@
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'index';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
@@ -414,8 +413,7 @@ <h2>Examples<a class="headerlink" href="#examples" title="Permalink to this head
 <p>Several example notebooks to demonstrate the functionality of SED for end-to-end data analysis workflows.</p>
 <div class="toctree-wrapper compound">
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="workflows/index.html">Workflows</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="tutorial/4_hextof_workflow.html">Tutorial for binning data from the HEXTOF instrument at FLASH</a></li>
+<li class="toctree-l1"><a class="reference internal" href="workflows/index.html">Workflows</a><ul class="simple">
 </ul>
 </li>
 </ul>
diff --git a/sed/develop/misc/contributing.html b/sed/develop/misc/contributing.html
index b7d427c..5e1d169 100644
--- a/sed/develop/misc/contributing.html
+++ b/sed/develop/misc/contributing.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'misc/contributing';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/misc/contribution.html b/sed/develop/misc/contribution.html
index 5b1301f..2ea5dc0 100644
--- a/sed/develop/misc/contribution.html
+++ b/sed/develop/misc/contribution.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'misc/contribution';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/misc/maintain.html b/sed/develop/misc/maintain.html
index 90749e1..461b62e 100644
--- a/sed/develop/misc/maintain.html
+++ b/sed/develop/misc/maintain.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'misc/maintain';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/objects.inv b/sed/develop/objects.inv
index 28a59c5147863f18c878d854c8a42a898e4d711c..913f58c3124e561f2ca6b21cd524cb92020e3c56 100644
GIT binary patch
delta 7485
zcmV-D9m3*_O!7LAc7L^9Td&+Ul79EE5a4~70k%6k0rE0fEa3Q@#0Kn%5hs|u2|5zH
zk7Bi?k<|9-{QBiZ7fRx#s>pt@PfM)&_!Y%VkrG)wD~?ZPU6=JaX>b3$G{v=I$^Rrh
zE4~}=AD@Ry^;)GI{wq1W>K7gHH!ZRuJ9XKG353(N&WEz8lYf8gF-*#B)(xdpKq}YQ
z%Tt!}D-!QnTioec*5%J+0^_gevLBi=FNdPQLS2Wl>PdD;O<9mRs|VKg>CgyHDJ#yb
zC-FGW>J!!oO+)L;OIwwvTRPrOv+jJoa6~X(o>k>jmkmvKELfG@b_Jygn96Fae|!-C
zzn$+2yu8Z#et#sfg@fW8v!Y0w)2V05whJ4cn<5yrZCPEUGBM3w$^dBgGIUu!j9C4U
zotbEVyyaRRFBti95p|^{Vz8QZ=a9#$0FICHPtb$4Aca0!7i^c+V^fWX`scMDQk9(M
zP1mt}>S813aR>5MdFEqERir&<-E?umRbv`UhT57u=zl|VO6&d}=+*7M4|N*NV`5Gs
zEGB4iZ3SH0H7)CgTR7l}Wy7^&>DWca<a*AAXV#^YB!6Tnht6V`^OVh8G47H})nrBV
zDpEJyg<t&@wTjeB*A%as)S`C82K`#HZvmETPkbJF1BT(*OL!`?pz-{8DtTup+4XHx
z7p%@%IDcNveRb9kfk4aPxU|Y3NKu9RmgPYpEz7<X+!xD-e-yz$)=3QlrqKqRNChQZ
zC9f6rSKfGnkoYkBJ^LB~LYNs0Qxn_Dr4e(X>m|VZogj`M#~*K1k3e#O?O@Vb9mh$M
zW8;EWp3@hy)8xjkLLDXqd~Et$Do@Xh-yga%Pk)P&&)e#p-6fk+w91~P#i?XfagQAO
z+eH|{XP>;p?qLMo*L2}FO;?mP2Tu9eSobI1+egkKf&&Ub?^(s}1y1ye9Kex1XFyJI
zoM%TyLH@G?w{3W{RdaHY6d9dATqc%{M7_`M(1)sO$-95)9oz@Jugd(M&|Pfowkm6u
zet*llHsua)d5Pbx@y>YZhNHIJYg>rU@_sdjI%k?8)v&z`bac<{m|wncvx*G^3j|WW
ze<S*#X}syv?|HM(u0yjZbKXI8=TNF=;rfb4ymuJ_P*v}UM&ea??>_UJX2)41d}hU`
zuHjx(Z*Y=lO{<D@g|mS>WKUO9s{|sbb$@uZtV{+O=VyT^f0n%Zc4T$lJu&e@;nFhO
z@CHJHu3JOE{OiaN6u^Qp9LBja41<9!0fVuornjBn2g3!Do7$FfXaWF;mF$d{xa?7)
z87W>*vVuryo}4(}<)MH=tL1_;7g6@Yh*-^~rFMpSQ=iH+wOrd9Dbv+w3xs^RbAKZo
zH2aDO0OM3v<SNc}2RUb{u9upaJ8vOknKzXSh9r#H5m5fBa94>qLpr?&P*c76dkPYs
zX!vABRVY2{O5$^MSVDNx^ZOBM*W;ZXLNGd(>R$?B_518ABP)(wW@!JdL0MnsLt)J8
z;$c`}gQgA@;0{WdXhWt%3+x*t#(%u<mRVL=p+Mi7?#roazNt@NXh6c>Ez-~tL`-5+
z_LUbjzO!3~%+0h%+_q1A#&j`Q^BF5|45h4ZS!a9$qJf!EWLLQmL2C2j?-^ZPK1;lI
zacbKAr*`tLz0_2)b)vJ$TLUwpNJm)>-bCePvW8NA%JMI~4HhEvDy_1=ZhvTqf>(0Q
z<3Q>1wi}rHC7Uwu)9(wky6O|tC*C`btGyBmfwNi^*6YudV6Q^6#KV<$hB^0`9_yjI
zJ$9X1fnYB=Yc&dML^IS!{^K2=<y369h=EiWb$i$IU@`R4+4P1EsCMoS&5JUJZ8vCM
z#8HSM5B`j&zx#GRrkftqMt}GCuwdvVyMplO9<#4mS!GX^X@o!liR-jB4>c$t#^;KI
z_zYJfw%PF9heDnWjs^;#W0%I@9AYr~k6E3a_w9g!as281hsS@t`S>WnmQ}t0z^GuR
zrb+_(vu|oy1ENuz-)@PU(zl4i6jedW>|8gzj^~D9eoiy@0E_DJ+<%qD+AG_R5gRNM
zNLw{S+Vj>{F^PqMDVrVpvN5vew`I9M|6qWhbhg4nc{;(whX#zyMQiqQ?ZMJO7J@Oa
z1yB58kH2?iGm4nXXRm$yk^lZM1L^&RjspUa3m18Ft;M&{hUG6BAfKYPTvEE5ks#$#
zQ+n!}OWIxQv@9avc7H6}%z^>|`)k`a-N2-m$me{wRxQA6dnX|BhhN@2JpPIVIPvQ6
zOs{9U`tc`mfv#ybh{c^q^XIItS!Ei#DZo$H(}{b;ve2Iwj}rPct+;#|CR|<l<%~`_
z9GF)<j;ZmE2|HKmv=#FNMf`pl$gc=G!vagR9PV2{?X~Lf2!B6xSsAr#F4t-()3Pqu
z%iYR<n@99As;`&!mS$a--J;jh`LzVG+gyRk0WxOWr;oT!Na~pD1PvN>t;l6v4yAk}
zu*~3sLG|f-jOX5F-G8pU2x5*WYR%C4Z5{=Z?!!1B#X6JL1H?hS*3sHz1V3wq9pGqL
z*VLe{)@m(E{D1gWd@0So5?n4jlx)nDdMDqH^2r_9pIieRe^!@hpV9?G>hGO^^e);9
zOYNq;z(HNL6P?(zIx*?pmKzq|$vE*MbTk`$Qdgt?@XmN(-6_i%p&f1^WSv=B^=1hJ
z!9{)gz#n3tHm5WbFGr+AkAuCG;#Gn;bAe#oqI`VYw12nXnx;bZEe7plUa_pcwrNup
ztRK=o&rt5Q5wbCS>4U`RO}k8C7~(MvSttG!Wk-ED$IET9gQ$MVzA#PzTRnKgqYpxw
zHmw2b03Z2p^!Q~4AdOrWsBsSnWstWal1D)YAa(q6Kn9I`4&0tMmqC7pDL;OVLzp<2
zTF~gjsDBL*KY&`0A`G26vUnh3M{vo#S=*Nj7%2VgcRI|vdC+mTt%8np?wV`c%Ua84
z*jdl$9qsYCIQ<|F#*wQu;V`a)wvbTj1Exs43|~XR0sEJhJ}xcFv|&lp|NO@%^q^!?
z4_>4<f(9<o8!<x{=gpu&3-d0>;6-^jIAuW?j(>i?LP0Mw!=cfO@Gj^W3-B2HsO1u2
z;oS&Nab=A_0gkL0kGOzu2P65!Rye9hYy}MRhmEKq3-(4pq8Dt$3RtK&;?aF-3tYfz
zx)~AgqZ@G|c<APnKmCr6I$LvW>2uEk_qvq6dY$t8L;8i?NC4u){<(8VpUUA|*)uwj
z*nh1lzp$2VPwm?ro1X{pJ6SW1mm=wh;-B38;vMqgABnmvq>|5%4@uGF^5{{yg<#Qn
zowcP+Po};3^j?$Bo6F_O8}#kK8_a=wQR-=P$iw+s7R(CeReU=MBwQfT1rjNskzg;G
z_=LZ=W;P2vjz2VIUV?{JSy)l_lCE;R_J6GNlz}GlJO4S^bt(J&yT#!8eC+yR4YC)J
z&-JZ#Cm9-1J1lUo^&5wwIdD-(7Dhcpwgvmjs-_jn*<qaOK(aOIJ<Ru#EK%K%CtLBH
z4%40&OulQyhvjDS@A0NBXFi6?qLS-Bz%t(I{H(5%&+6Ki75D6_L&x~|)eov#iGQ6&
zJt#|??k9df`BmLdexC2|C^Yr1zu8O3I;s_(8AUI12;xe9kAC64`oRBL8qu6A$-U!G
zmsjAA<4ps^Ye!$P2i!<Mtow>R_;d43G^**I7k(=b;NS5HM%FVg^d$GI`uplTG1Tw@
zU|)_?f-FHfJZPf(@kAG2Mil+TYky-7`f=FFkLqHl_Ilct=~SPktT3aap`GCEK{P0c
zhmcG|bq~oyJI5WHo2L4^=#rmV#ph$L?CmGlyYqJF*;4$OFDKvQGS~EMDelZoXWzpq
z7`5H$P&)f_^eMCqC@?uUP0vaDaHc*Wuqc$T@hpD|Uo#L`6vEdLEda~d1%HJQR;;zN
zhm1Y-=4_&5Io{W#|9ZLfLg}&|RIQ8L#Z2&K<5HF}2@-uPxSF3#+tm?l#<Tv3bVhA;
zgmN50^8u_xO0)iSNEw!vF`$C{A5%*}fi56IWR9yC2~qg25s?Z3cI+Z<M6za&OHzYd
z<_Y*gGs_2x*MS=}#~GnfUw_nHsSrAjv)8fITu@L+1ZDLnplh)OTY-rMFb(QpAc0-*
zDxublF$!WDGeKfC!c4Io+!xO<TLxkJ5sZ%h2v?{Cr68MjhbBg|YmZD+46<*3oMSWt
z4bW802qx-BO-43x1x?iqG|_krW<)#9_(AF+7SDm1Vwt!A;^ae&Sbt9Ek7b31h*Su%
zLj<3SWr4&3i-xe?1{jEC!48+C7GjwzOh7Cvop}U9#IW8Fx*)dkrYu4cLQG$RDa5i=
zLqsZs*s;Vvi)Dv~h*Su&BeE}C<GkQH-2a{8yG65L!b6FNSRex<#G<dj;IbIvdXzaL
z-!+C;1i{V}x{gTF2!92Y#8RH3<ArdYF}xxucE*r<WS(X;gfN2p9NUk`cF}hxBN(j$
z1rk}UF}xy3cDC2baBkYGWtRYkmnEDbm81<0BaNWHj+{s&y#evdAP9~D8Hvm$ZAT)S
zi;V0T#77}`1dzPyK7>=<C$2;Y7jqCKEGG*JKnTTAi>^dwsDER4MNsTOA)Cm&Vdw$M
zI9un~QFMbA2%iLsnk^g^nWz;ICyz2hkA6iaz5?;fpa@Ps@;SaNndUxJEm$&)@;Zub
zJpLP8l3J)`t01~DO<M!g^ump+f)@KR5rXNek*)0SX=Wc_XXxX!Mm3ITuRV`oh#1z#
z8meHioP)Gun18#C{2bff9e$8{xW&X*U7+aJ1f5WWOcAhS+GfNLQV+B^^nDp3);C!*
zl8Iwf@H<#IArlqj*w^2|vL0_!XrB`EH77CXdK8pM#Sr0rCoLd+43NMwpuhM8g{CLy
z1RAsrP#Dpy9W+%l&_s2NfgTY(qLBu0x^AGMs_W*nK7YB69Mj4zGEp&(eSKBt_poln
zC8<TUth<+K9nrSXbsrUjG8I86Q`QgVC9-#J#t%{twfJ_4KiASg@j8J9UE4y1&%R3^
zYC;cC4z!i@9fyOU=~E7m_-KKOq-oyuxJ20$2V(HwTb<RWIW2Cf3(BTr$pI4E)R`R!
zz%Sz^rhkV^MG;yl+S9xQRuNZG4Az>CL@x(DY%7YwO3|J+5#WiIDm%uJ<khKTYw2yp
zb7=2G4QMk<{$q}E>B2Newlv;_WF_A%EN4++Gv2EEWx%BL5Zp9gYXp!OnB6*rHi_N_
z0wxD0IL7}aF`INf0$?utfXF0T1{k<3kSutQntzwCYcm>H9L5^3A<IYCyz|O02O|jC
zQRQQ3**XOf#Bg+PiGp$5?R^3WLOBBWH2I0zH!ne@5tJt<((_3jh_x9DsX*c$T;N71
zoIH&9G}uz=u%_z~0C5qU!o)f0(g%%G4*-xfJ*Yu7D@d%Ro+A;I|NOSjefWfjjTr?j
zihpDp)bm?l;Ic@vbIr(JSP<O}5JnnCna?jtPW!CrN(EA|P11Y})^jvNA}s&*M##Lq
zCDs&BwvIF5e3`G0g>$6Ch_I7b5p=x7^wHS@K%_v_)PcijLZg~J4Vw8N->OyDOHCr7
ztNUeur1;<?HW{UIYXXJV1^^-jqBeh;s(+T4#R@Z?o)H8p38Xos(=J5y!gxNKk3!c0
zhSdPk7mf#>r_!<}fpb=MqGw%6X_tEhkQj(vv`312oFR{L-V0mMSz5ipMF7Ob|6<%j
z$oTr(Ck3O{vDA7{te2Lq?2`b|5o^GB9!kra1kQQ%pM&N;HXMX7maqLZEjZWJ>3>-O
zK{!XyUOfm=+b%t*G@f$6dV&oHA&llrUF$Ys00rS3<E$(=pm6eV;vo*#4gewrr#62j
zo7uJ*K=|!Yz@l)bQv?EaUL=+24h1X<V!DlhhbFlLfJlL;i8uKv`^u|vi1%ei0gEc8
zf;eya<`=V5q6(OxE_Q0KmlevxwSQ-)YjxmtO8o5Hh%Uu9%d)6SN_dj^+3oWme|s{U
zq^xF)zxzv8XJ;?>t@H@ne^l27cy`LJ)o_>;4}bQiE_0oUQRhM3O{Tj?ad)5L7;NUy
zoDNx0h&UcOcO{$4jONMQuRlhyNt#olBoZYtGux9od!Lh#;Q#*iccZe5M}Gn|U?)Ds
zFR|0pz95)x!)lj9aSkh?XVkGvWAcqxprerbV=53sc0j%+&4)?To`#~ZMBSv5(J>%W
zID+D@4D%j9P{V*o;Rv!9-dl^K@1?#9Q%9$2M8nDB=$}LCq0)Az<LH1Ioh!!)z$=2{
z1sri4xlW@_0+1n56W@4*(|=PaFgY4cv0@$8o@Wj}z5np|uQwkb6O1s8wHUu;^NK)Q
z!@@|@h|gP1#7+6xWdsXMpd>Y#O_8b(xa!cWO=x#EQ}B0d8_|*PscC!5#6c#_(*`wv
z`lV%^KGU4_cOMta6c?&R1CrNT1^T_5mNg6jAmn2vze!QAy-<W!dVlsbQ1-UZ8hzPs
zKWW^jd9r`X@-N@APKI%<(klDwh9P0n_DOgM6<yO>UvS!)tkkSYp1k?omtGbIWsiV|
z%_W;?_v!ZqhRRmcmFgj(7A(`JTiT2pI;A3pjTHhUHu5X8bKP(+Ik$9#OS<X}=W8Rt
zY96_WdU0)fzU(&g$A5EI7Oo|!ZMHsrXEKOUTQx)4^GQg>q$Zxz9>F7^c$JO$iSqmM
zNxuI@m(w3W*;utUVjB!~S9vneKiEOGa;r-#;!vJWFia)6xnaT`8VJu(O1rRN)$HZk
zL*Pci^|b{QWcDn#x>Sf`SZiZt&_Z5I=Od}c@V{$CxmsupGk?5|o2?7F0JVBF-hJYJ
z+7Xh4TlLLTuMWWYk>C6P&HPkl{WCH5mF`dC0-UY<u7$UITE-jgpVcKebM+@JMI6Ob
zX4-e`&VHw_a!%e)Hvk;CFWD2V*Hu6A-(b7@mzJ2Nruq4gPv8t?G)Qb-O6hn0e>u$G
z#c0`>tH1mWF@MgYzBHP|D}kpZKZwekYc0YG4J?r14h^Y5<j<<C<&ttb6vKiw9$JNH
zh5R%!J$20`?XGoN7BNgQfYS5`Ms+N6zAVLAvqeKH5cv1kwrxaIdRZFjaBEo~YK0k-
zqz1Jppzrzc%bSPCUlV7li-tZ9s|zHV6@WI7Cjc1=v47>QPnthxb<L_in5z+!q(-vn
z>3TYGpFq|dj#E?-ir)-M(<2#`H+9a(3waV;ya#1QB`VVF;++=9(26O7RR&CwT8Kq+
zKb*E=y+f5zG}|obfdKLBmFL@Zrf)N%7`(uTBE&N}YTY$KhiJz$v%OaRz3d#ZgVf_$
z%BS$<y?-k3h#jOJV(H~t4JDs87wqLe?bV(^I7Upv<5p)2dLTfEz4i6d-qNh=vfEt-
zA}f9{1j%a420pBD%Z5IXB#EkA2#Ds%t<jJQbpH5t6gMH`N(xYgYz1jG#YxJxo&r`P
z+d^McadLC6s^Bz9rj>O$lyZBS?E^lnReMB&5`W1S`?0=Q8&*g6LWN13+pPP~l|RjB
z^XVNRUWaN(&(e60V2g)VAz49OXtYwYFEs*Hh*pSi0yLK=h9NshiWbeBYaO9qQYb({
z63?JjUMn5nIxk8QY*)zY>VB=)knCqNHRSn6Ct|9wuV`8`(8uw|uL}@dHiWPou!()6
zoqy2=m8j^lYyA>>x<uBE4an+Eb^?^6l0?p1Tom?m7r!)_HgOK%WMrQQAk=~^BFzW9
z<ZN>Slwy!w^tpkTqjP?M*Cv~Z?!27bOq~`;fy|%i*f~krojZgY-6D)v<R-N7jJ(2R
z&OsiMla|j*LMtO|3>y#k-jY$k#b^7mmVa#fNLEe^kQkbw*v!(W%_+^qr`=Mb594b_
zBq+ITxs+Ykbm9}PW8Sp4p=sc&zMAe^uKSzRbtWU39P^50^|ei#s$l()_IXx^uruSK
zRnS&6rnCGow43o<KaUKSSYQ6df`};qzYLI=sK9)pA^sF)M`5-_00;rOU2fFJIDct6
z62TlU*%!t+_cR`hwnxCpXZe~{mSooD&n2ISr6`Zeg8~#p@wA5mfO1?#1Mmr9xDjSY
zE(nMeh8}6E;|77rVMw04=Gyl1804%fvmW7$L7*_wP}<MM>4$V^)LTsw+YJIh2+IvW
z&G4WA1+hHU;XvUfxxxX9(%8l+TYuBxNpNu}bEF5ZtL`TS`&1|m@jHOZvi&0QO5iCW
z7wF8{?w96Vas-lNTu$^Nh=s-u4y!>iA$-i#`GAH`s{)aK@SwUO1Q}l)Dnu*jtA!3;
z&UHeJ9?__t&khDTpvzb$ksgo<m8eLtD^_zywDW)lPF&%%5V5aqf)ptHF@NisHWHha
zOoteOVbJQOg^F+85~1d@XxZF|^-46&y;HJF1aja%=``lunTaPIOD1H?jwyf7b{(J!
z+KP~EIz~>OEjmygv>`!TbBwHf+j784cw6Y(am=KgTXBFYR4c-^;JC<nx8I<Z<JgG)
zj33U^^Z`F!JC2#r>ZN;|4S!BEj%m342ylkGod`(PIM(5|)W9k3w$mV0sn!K=qjB+s
zY@wm($1*lvRrPM0K`T>j4Bal{A_~|lLr_Osid)GtGTN<U*`?6*sB2h83XT;lh&-M=
zWlxWpiDf^JSD3~bzv5;mVq9+nh?AI;*4nIOY%6Ub1rmSyDw~y)bAOEuu7x&-yhq2#
z$+bTRq=4ohr^^BNHRMi)x);aD!m$qrB9A6dT>dk1u`m7s#0ku)yHzY~96MED8h8^h
zYnNsYo0Ute5Sm-is-=;JZ_N^{<g!H`kv91aIM>Rg>Pq#~P&><>e@MTu8<xjL*O}~R
zB0@LKK1upi4&O?|Tz|od0TP2UEUNKLX*uxqe1g<;m_ZnXg%VfH=S?xj6Eo*jd1mIv
z)j*<a?oRl&4{<9<yPhMjo$#@^azn+MB&&z+#>CfXzKr)E4-?3v0C`j(5GfEv@xwZf
z`lyM*c&Ck<)>JGNbEF6aojFK^Qvyv3T7BF(uRJ8b*sJeE#DA*vd@T$1oeHykyljeR
zFCkmTTlxDsg|{=|yv}tQ2<k=ylE)N+YNg3rmyD#;gEI9%OyR6H){My(T2pYUHKrJA
zWDGI6J@4?$UWVp$m;weKE@j>|ecrU}kPV|u!TKA>inuvWp|jRT%T-(v=uAo`e|z`%
z$8W#<luU5R0)LleL-NyyH=p1AH!r{b_IFw_iC3QoURlfDO8L1wJh84S>llTE%Fk0o
z0xS93$H(8^f3_CTyZ475CD^)rqzCG1h)O`V!{0?Tx}U{eBgE^h_?p!@D-J``?oMhq
zLhe-FjMvF;^4grwQ`VQcDA$~|11Ot~#*gAMnJ&$llz(+UWK|`Cru7U`JX?+T^JVh+
z@xh#lxOb5EAQ@=V)<+@pl-0xiP&GMqgu8af1<8A`udHfXQOOQpS=YO|+g&zB?T6)F
zGTw7C(613$uhiD&P9ZgWOLN$!%M$zdbkn5&dcNgH(qtD*ab78CQ<V@rI1VfyyP;Hd
z9j3^dwtp@wIlMZv+Av3+?oKsF%wZR?qREAjCc&$J!tY+i6ILaTJ1<=QJ~&PXzm$D0
zEKy(fPZ7UICcDJht60Q`M&!E18S9rBXKFcG^;P<pj5D2Hkm<Tpg3^1}d=uGz9B;nj
z&bpzj+uLDE7^ex+ryomQOZBLIx((0VoRxOZ#D89mZP|-^<8xE#pRzN1C7wyvmby*j
zEhQ@=JBk~6#C1(>yscz^9K)u|>Nf^19_JLA%91iZulf4bQg3%kJGb%G6h3w@I);?x
zf}Ju@j~A&)8biO%@l<xwo_J5|I2}7}N01a1tYNF61>sm4&Q{14oI!W`w>p;Tsn*F(
zqc(S{4frE~T}r|IZ`~wAIaKWbUhVuR3yytCupKTf0A^RlGH6&aoFnI^f7d}ggUJ5_
HCZwOWnbU+U

delta 9704
zcmV<EB^TQAI*d$^c7N4fTaVl}mVWoI5a4~t0ISN_j%Rj)#R9gw?RelG8*XPN*cU-v
zVpS_vNg7er?#i!U-Xu{HFNYUpW`V?A63_Yg9g3I3BZ|bR*xi+NUDn5>z5IA;igSgM
zKPDIz-;4XZ`~Flt<tgcZB<T}8>CnGfk@xwb%TI_R9M1K=FMpdldA7z-DYtpomrTJ?
zxjvun@{C-0@gBA59gOmBfA38|{JJl3-yBIf6oo6)xi2g1We3w_1-VCck2;+74ds-f
z;)t*pkKL#~U<qhHG+dtAsytjWaXZVq<M~7o!Fc<;D(||yZ@OK9s{FDlC`mw7R!jZe
z75(?kc$ebstA8A0L1GC9#o6UWku`?{M%=a&>hGH(7_@CsU1TgV%OA@CX!O{3`Mwue
zxX+J>wm;HxHIEmJd^*v((t2W`8g<8z$I1bA*X&QwgVi8~K3WrOm)D}H#zXz}jQfly
zXZxn>(0=G*Bj>RJ`KmmUF{LUpOjtKvTyWl)M9KKJCVvZh-yE_UZ-HK2wtc9>XdV-D
z5J53Pi*rli+OBC)*I&W`4=C@?9m+%(8I$WV@9$BU4U*)MWdu5pUCu)`W5w7cm#WE&
z=vAa{x)ZtjEov31r>-epHK}Rshz<HsqHh6~OHX_pdIN^x(Mz~1^Pus3cPL3`$k^ew
zsS8x^QGYmIO?-8P`#_*+aGY9Y5G1X_xJCOQkQU`%3*w9I`)5Tkkakkz0MkeVPNafj
zt&-G=`hhf_AS5!(K1UA`AgGzaFtuk}IW=@HbUp=mzXQbXM*Migdju~BSP#aWRWVL_
zIW{I}?m2z+cACuCRj9+{03Vw^k=kcRMDF)pxqr`!lFZxcJ=!FjlD0~Wvf@yps@Nh2
zd^u4=$n2Ap*cL|k`<f=)rs;~ZCcqgP8*6+Zy?x{?A~>J`bc`yr6}YEYWB`urIRkQv
z<2)NO3i6)~xNSq4EuWLqq{!&x;UXF~qV+!CpbzEMl63#fJJ<#sSLJ?7=q@&PTa`7+
zzJKLin-Pb%JjL(UNM}5C!%<uAxh-gCxm}I%oimM)eAu1_I)Be?w?92^^9uDn3IyW5
ze?$ABVZ6cFbJ8rN>(DI9J?S92V<^=lb$#h0Ub_qdsJwS{Mj};s?LL#6YR8!-+@j)B
z*AOoXE1cv}Q>(&U;k+jf+1**yDuD<*4u8+X%HAMiein%GYe}ka=dDh<Cq!Q;oLZzC
z-atsuxHSaK9!G|t00PEv7-M7@1_KKLgRzFDx18Sx!v&HX+Lm%?0szoRc1}v1^(fJd
zq^~DY;Yn$noEYEbIRS-M%L!>LqWlqgVl}7Mw=>)~^`SiamTP<Q%5=7D!6RSd+<#C9
zO&<{fU>wTIyNVOtp3PaR^QrdCowN`d=FM2Z&<kU91h~IS-BnMVJ{#Tx@TuOop27={
zHhgbIUMLuKrRQ@sSmN=d$M++?U5|Bk2*K!3Ca)B7)yMe*@>UdGW@!H{L1|y+Lt)f$
z@i45gK~shba0eMov>}tB1@;XLV}A_1<(eof6zE&ieLYmoH@@`64~Y7^MHV`O&`E5D
z9!NpEcXrc|xtR9Q+xm%*NT-7}nX!__P_p`#cgi;)5||2wb(IqlM{QF482PKSXX&n8
z9GZ5$)Q;WNml{vjPIMM|OJFJ#<|y;Q+f#X(tT`#)<@>Ls4Hh)>Dy#C}E`QDt1*znc
z$Kj+)+HPR(r+mm9XU_{~b>1gtccga|(Ow4SfHMmU%k^hS&{v^R;_6H~!#(ksuIs+L
zTz4IhK%mDxY9$JDL^ae6`SBB(<y2@D#Bfxnb$iwGxMIkqv*-;CQ0>?qs)I7=vKv$f
zaX2E)gFNHm@4B6fbk$>8=zs36CJeb`XAl<MUH*`lReo2gMhGV$dY#qkp~eXak-1_|
zm*FzRHt+9oDCAM$XgC3M=+r2jLl+Eulh^ri-41*(c5mN*xc=L#n`;U-Mfm~%qk^fL
zsu$3&xT#qUh(>LEyG3s@-y#lErwUT$$GRbPe6JYh$24^hFsbg2U4L23y|U#PvA|M+
zv{ln*n6$PEF)Rm|vRSb&8zpOUo0a?hO9lL(vlQ;j!vQAVH(+EUTBFA^21^53P{yPd
z+>wVZey_?#h^WeEt-X6qet#H&<o-g&0RgbU#lAV$bS<<Z{N)Eorl>8EWbS4pNET|!
z4qbD~x^tbCMFiXq<$sG=P#_>aw{6q)h<S-*&Ua~f0A|@c0g*p^e06pG*%9DCs>8j1
zJ(JaUZ|Q||P18Y4?nJh~&+8ghs<GP#`0ji-5RaG@`u*flLZ7A<mrTQ`tIJl-$dto@
zN!25m67QI>W0lTYI#1xlx66R7BIpzWmS{O_TR`o(!W+W(U4LFiEt}K1>dUOG3-q{I
z`7iT`UPkr#)Lyc@>+(zVS~|X#@a#5cU~GVl+4lWMTqC6Km}>+L8g;eEWnK0qdm}K-
z;DSNr>3fXl-sasu&!h-qjwd{3s9l@q1L^O>7$9k!N$LUOpq}e!Z8CzNHNy^Yw6rlb
zsH-)LMbRIh>3>RT^x)xg>7iI-_NjO5{V18-dHa)dfZaQO>FiUQV7&T!BcOj5ZH4vi
zrmet1U9}P2vu8D8`gdDqSocoGh!>%wS>SthHT)0hjC<4_@;&lshf4@nXQo!Y2w^yI
z;Y%OLL&RBg$a4B}gh^mG*i%VgCD1(=JdB%^cW;{Z@_(giDu=#Bp}pHzD6h|L)>H+;
zeTMhBlY6a%Y!oYf95Jx!D^nN-eN27c(LY7m`97T8=`z^isea18B0|8mdXR?aKL|<M
zehp9txFNrt$1gR2*T|)T65oLM4Dvce?@`bI=sW%yAcICe11=`brDw}9+2YqYggpmS
z4VwQjs(%A?A3!xo5r$3~nLZHuMQ};HS>4J77bto4yFbjldHCZjTZKQ;v1`sPX0?{g
zuyc(3JKEiSad=5L#$i#Ka2V4@TaHkC0aGMiiq%kXK>XPHk4uxX->@X<-~RH+c~DZR
z2M6hupn(B;C1z-FUJV))m^VQN2j$`5J^^7k`hRwX;v8g#LpulIP0%p{@GkgK%OyhK
zT?y~w$|`{Z99cD<X8>Oh=H(M>;e0(}Entv8tV9h7*ed}&y<jC)K%icU=kHT%-~yuQ
zYD9M*U5OLHLs#$oX?J}1-kPGNk39$6>*D(Sb;|wA>?^u>0nmm0W9N|FmHoF8BYz<J
zwSOjCVa?he|87$>KMUaZtY+*^MS}a{N8)~w4mo|6@VithxxKzhie}HY9%Y{pOgc~V
zw$$mdv{#?rOVa!1bUKp;eMw1!Nr@N5pEiL^kLR*LS}3dHn?WEU0*Ne;Fae1Kdd%q(
zeyq)G6u1^YBxO>9>8vcYC~HYmIi4}<EPrJniTq4{4tAYNy#IbOxIXSW+|NPQBJ8=o
zk?tgYLu-cy?x}nu?VFT{Lb6cmIb>U)2UImJRnAi})q!NI(z_b(C3(WTAxpOOIi<rl
zFE07c6|bh7$v?zRUCv|-Wkto}Kfp3x>b&FE$t}OuWko!@D(w&%zi`j175&l(gMYHr
z>3$;jlh6Eq@@~ApqR`Z<{$?$~>ZnwBY81K5A&4{iHTsG8>OJ{i(}>1oM(!u_bV&ui
z5jPbOPYr#=8gL<fHSa6d;P=fp+Ng$mR`{hnfPY6O7&%5(=t1r?|NG>7I@FK>U|o(w
z0xLl_JV>JJ@kAD%MihC+Yh@1dc7NE(Yksj(dpdlTX;dGjv@pWakaqC4ASx8-Lr8|9
z8bk7s_HlR3O;Y`tcFFgsBJ(j*_WGUc&3PO2bSd`Cr=9QJGMDspDdx;od*8z;D7DS$
zP&(^<^nGY4P+)RqnwFjR;Y@8nU{NSv<zD_ieAPf;Q3zkdX#uW`O;8TPoPV{n_mHxu
zUhGYjOxyda^q)?bRw!B4f+}^9t1}a<*_f2snFNXaDL9{>44<nzun~Lxd(siwd<*3`
zgvJe6Jt>X)!zN{}w3G)buzy`@3Fx2;h>$nO*%=8@_|6d>6$0#7owyOnnl-MM8r(9=
zfggTm*+AWO;0BH7jQCNX)PGH>5ITmv*IlWZprDctl=+{4u0?m)3QR13X;23PIoQQr
zCDa;mMnOzt21r+pFjF)e_r)_zmqD0*1f!!r!WpWEQjkrnO%tQpwMO<-46<*%ontfu
z70|w#5lob~nv87X4BA&S&_v}nm=Wz%;|HmSSUeug6wAa3&`mzXh<|B!{#aH>h>i*&
zcF@D8Vp+hjz@j0nmj?{QvS5Ylr50kD>6n06RvPmNhKOOk;^>0d#;dXjMF=r{I!qy!
zr4pi}LWmvH`Dd~0kPsaeg6xRw3)gO5a2@Xd4(Gc?vtYn;5)ZL}9gGl*J_m!#x)7I7
zne*g3$FPbxuu~mf=YL632?dpOr97OD7s7SKu!=abQy#hJ%~Or$And?>JloHc?WAu^
zc3?C+DA1GD9K$N&$WHfK8O}|5wQLe_;iWmw(3hkR&PCdR{`}-bPtpqzyNm-taUi27
zvq9UC=*)$k>=?v{BUl6+dDS?CQ;ic-B7}?j5F}Sl8Wez#6MskPbR}<wGKN*ei5=+3
zCU4#_^Z;cyTgS7b{0*8QY!Xh?bjMM76V(E`$vYV#pMK>{d<J5daUwYU*pKJSdedAV
zRST93qdY&wHXi>4u9sS<WwS$cW12Px_R|YDt_lkFyPOd0uNv7(yrr2qz|PResXf&=
zqP_Y&f+1p9AAf78f}Q0Yq#eWD<;l;n?OovqsfSza`Kk+ay0wQ+s6na|uw&Y$#1B#r
zv^eyAnZsG%-kOn26sLl3VBvu5sTjvTyn$ud-KNk!CFW~R&qLRvphPN$2=6=n4up>Z
z5?BWQFFrv>(|hOy8nis1Frry2XkX1h6Ztj<@`>mXjek^t`|Ac8%DZkd>tk``m{u;4
zJr(2FhpTeGg>?egOD&>h-BzY`p0<U?efSxa89jtDL%1(bk-c*@evo>o#g|k3xt0X#
zt`lg`xh?qd*_-sCD)a#5KwG`maTo}ymU39cg$4X1P4!og(<z&DLk#kJsWba%PCB>L
z1f|o_<bMD;+tipH2*565B_<!2>O^R!s86#Jn4P%l#9*#zNVIa0k8O3LFjLg04FpJ{
zrpk(QBuRDZ&|G?1@eJB4Q3cw_lKdD?xin#_PqtLvg=EFvElhh+xn{gnx66P@$wzSe
z@tPxm#K7$4M`(M|TR_0%zy!tlzh2A+U5fyi%YXVnWG`9@7`QBuEchEWD__&cXkc*|
zYrqFtHoEFBuk3O#f{-t&Yz#G@P5}g6IGR6+f^l4Z`vee#as+<UWGAZscnK=)KzVQ?
zElcV^tkqbK3SQiU3tS21CJ!S%47NUXSkko!fVj|)!stHf%m<BA4*-yUdQgLERCuvw
zdVhvQQ2yiFI`ife7B*@Wu&5)`pq^g?1DACqJJyW+5e3m*0J%uRD3kf6m(xBfno@xj
zbdxk2gZUgykqFDby?A8aUJ`8zC|kpxaJJ0n+rk;rVMNe@Mg$EnF>Q2~01zn<HNN4n
zGa;d-PlIOOv$ty1`BZz6kk#!nKvHDzp?@D4W$e=gA6g3lh!lw0xHOfAm}!LBot_c|
zDhZ_7XTw*B{DtwjHJ=Y%1DLA@h(2{Z+<9^>Z4x+VUMDc>N}qPQMgWO{*hPD!ZjUqM
zQI6lj7XB=?-rytv;$nX>ZXu+6{cV$iQR`5q-6+;dOIEf?fauT|usaW~rA-3oEPwpx
zpt+9@$3fVYuYNZzIM><kSpY#eN6@!=5Td%T^q|u2lmp@kIvfXKXTH9%ZWRVl5Y919
zWWfOCCJ!eb;&811AX0E@<0{!)_n85N-wFjR3THZ;K*0Bl^kuq20gHl|E>FO7Cb<HD
zNP(!)H~ATQAk{d;`%<HTMLAPSoPV@@^^4gdksp}AFIH+#rwC<w#^`XaQc|br&(4f!
zQhYUqMR`&}lIYKFoxk{P$!w6)njwDUQ(ossEBB?efW<fbS^<v^`MK)TK{5RmtGdj2
zCQ6+vem5EJ?&#fhhT^c9v^k`CQP6Wd_QaKJP9vHnbGyDc#U^PE371H?#DB<aP3mZU
zPE>;Y|J@&y%IrK6paCoK;rtRkJ!u8Oa2r;;42t8i5^_czIyEZacm^tj_#ah)D6#|c
zRcT%gn));+3e%~Z{$ykfh?E;a`j;K^9zamSfJnI!M31Dmrd!`LeSS=xKUF1~o4gzS
zV@N&Z+U9gOI-o{p%5ea&ihnrq0**L_T!&F70myh!qia0E>2Va8oF7dZu?}m`BZs%|
zKV1Lq)y;L{BJ9VSj^C_#MW8KVxk&pFA3rsrH`%hw2o|V7z0~|{id22TRmZ>Dgmz~m
z1$(!)5EXn6O^Y=X2bMHW8~FU`V~aX@ra9`b78kP=6RJi7lGj`Xx_@3y${Gd$5VA32
zYf|`YFDF7XJ$)J|d)=}|TlUK(jq5Z^_ILUI>$kjP$GBEmmH&2eA)(T?NmvLKUDIk`
zaO#=N)U-*Kyvf|xzbq8W76A*JQ$Enf+4I7M%2LymY9YY`mf77UYs3egOwomn76K$D
z_?7vwZitt>*K~waI)CpC$7?0PY#up@T5)xHw(J)2yJJ@trjXP!TbsTy8N{fqnm)s1
z5>g?i>CS15U=iTF%0~S}$$j=D-+z?l<OfhTTCIiH0)yY>p3MDAJ;+jScBw_|%fkVN
z$t4#zRJeTu;VGn~3k_C{9?uv8Cj{r$8c>kgqulJ0BZ_0Km4B5%I`W!1A4w&S|D7wc
zXrc0$;pMs6vY-i2sz>7P9r4q4kSxrqukJA40OK{e`2m{wp~~^SXYMoIxAX#>EnC+@
z+Pz=K3+;FO5}Y~zla=%w#Y3+8?%16DN}uPPydQ1=I1pbFds;86-jLs5yYXY|nWdz8
z`^zVAhU_#**MGdY($D1IvLDyQNZF{XKl=?aPNP0Gn#3yMPKhmu+BfH#9xK$NK!z(c
zM+Hy*sLER+$)-awESTdtt9V+$mPTfWt~q7hxz5TWhA9eAKRpklI+Pn<mbzK9L~~T|
z;E&I3+t5?#S!rbbrA0W@3N@ye8q}hIzURZoS6A1c6Mti>iH1B5^9x5ZGXQBIPXIDL
z#HP1C+5SGSYgFN2u1ZWVH7|?q&W8i>30S=$I7Jnq_|>3(dR|8Dn|e>i3$_znya%O5
z^;Gn;i*#B9Ln@{SRw*#O)Iuy8`{Asm@eW=_(QMP82Li;im+f!Usn%vhF?fOxMTlo|
z)ViyJ4u8>(XJ&h@@K$yT>>%}cmXaxaxm5)g*g@(cmY&X4Uy^BafgZPMulfwaF=84X
zw>oRk0|7$pt<R_SlI2~OUp5(twD`dgURG;9;Bz%@`k)Ua=|z<V0-||xb2LW<fBx=q
z6f+@ZBn7DAZG~4f#YjpQPXQ}=+u|QnF>*6TRe#(xy-X|XvM<@^Wx54?u2!uPJ(Rp`
z(QoVPYQt>nUZ}7a=Qi*Dc_vRY+I)Hi=&s{y2u4}FN3g_mR`IgJGtj7|qz^R$RXnYr
zYXT&fCx#&_NFOafbIx^yeu<+11-*C%MR~P!Y;j&EMX+5V(baXVSCMRIGBo7zM@P?8
zL4Oa<v__yC@#FIZ1eXmV%m!@FzERI;f$FJfvTObldbo6~8w-%xo9qNA=S$LY-eRJ#
zp1atky=i;S0gR0F^8g36Ad9@_16FdnIf0X6kX`<B11m@4{J>q?+f3)q%g9aDX@L~H
z`FlEcMpAm`&Oy!JA{Vd7OlaX5S%tkh2Y-1;Mp`y6$ywRK#<1~l?JX$<OnjD$wOHGC
zWM#wvi8(W*AG6@BIb=Cq+RY?z7+*D_hmy&bQ`vP*N0)Hz_Dy@~n+6{Bm2}?_-7ien
znC!@8x35rMpWCdd3WWO%@AEo@of^+s#o3BRwU?g@?MCeDXOVFwhRfej5HSv5mwy2g
zqZOD;H0YnA?0lFl5dcC!Zl{ayV;nRMiC_+={3{}yu^*2~+ah4(Gp%N2C7E~o`;yGV
zGAED9f&vtD;;BCh0LpQ88h}m6g`3Ch$OHkAa-run)iHy><XlJ|yXM?twheM#l{t2B
z#vo8G(oov>#o=YvH~g)p7uy8_K!3=UoBK4wf&vtD<;gb(3NOhS4p`KWZJe@IZJq=d
zhcb8cz-86-q+p#2r9poOP?<izNURd>lpF(e>TK7cIg^|RNpUWxa}Y#BV+H4`;bTJh
zm?`rC4WC*CPyWG!>Vgntd^M<eTHzlpH1IOU30?F&jlyJh(6a%Zon;c~0e`7bJrzCd
ziq+g5+Ic_&_l$6Ai0EURAO#=(F7ZqqiA5ySAm+g^D0-=(VvAcksF^I9K5lgNN+iv-
zQ?g0~av(qbX^dZICYE$pG9jPrsPeabt^-tYwj$&+9VI8rCpu6aXG4NM%~7(leU<}O
za<|3*a~w4(<EJ=46<;gDK7YY6k+Xh&<E$LVM(1VxaGt6K{O;Ou%#2nq&7ax0X~r?l
z?Rx|`!_}7vj;e92bNi$QPI2`)jiaisb-|y}n0P`yq4Cj=Wo*2vYW-}+S=rad(9dN|
zL;;`5c&IyD>K4gTGFrv4^it0Bd}CNj3Wf+4MBbge&o@14CYtYgtbf9OoZTaCdLqhr
z8$jHPxmT=BOGX!I11Wg%_m8q^IT>SYa4lzZyuZ;=ax#6N15$A2AE(O!_ch*~jPJKN
zN*0Fia3J!|<UPZGN-p}~A3)rLx$oC18a9S6RbU$KCb+~d)f^U)ORbPIx1gw{l7=m2
z305-M!nQ~o{02AIN`IwlO10DAUzXj!%)X+FE02Y)G1<<99^EwhB-vfre=8m43Puc&
z7?fdAi9My+z=z2Msp(t>VGx#+IA=b76r<cRb4+D>X5P#O5?OP#!?%8jn?dUJ40)}D
zcg2|)N@J3!?z;=3tI=#3uR*Q`kZTHZ%|ReiAd2*db{w@)qko0*lQeE>Q(dX3Pl|A$
zGaeFQlyIg6tv=?QXC9JW?8*22nKTXJ+I|0QI5;yq<X?FpXIHkD`fg6hD9@VAYjHwn
zflf_L_iAP5<&poYW}jEpB^eI;EfT7kKzTeB_tP10O8yhT=?I)s)pT8&R`O3@`{c2i
z#p2}kv?#Gy9)DS+Ln#nWWcW(S*wL3XKay1B_-m^1|Lmr}3Cc`pCz5tDoYhK7f@mj_
zc0#oi$zOCR3`%6+l~)b<ms6_=X1Mi0^ub(e*I*_S7nV|SNBj7h>N5geULTz;xzgeA
zgc)U)0Ae>(VgIJ}Za{cT5!l|*!>xqgV%tfBxQxd_rhk1CSn0nQpvJVMZ}b)RdA4ur
z2h?GDW^`M&h@PvN5w%R5PsbdQluR(1>VYkMBwnw*dv%3<_4(8Ft<(!&&HJJQd+ZZr
zGC(G0y0LsR14|fKA|5gsL<-u3{}<Iw(L}WT>9bvmd({58O%YJ|TL%AZm#`mEx#NCY
z@+1B;=6|I|rvIE5{YK=U^O8@V^Mc=i_>bE%|8bxmwa{N|%l*Z`{lx~{f7qq$K<-pJ
z)OagHNM2X#ynfgv>~138jcnqUkLQQs@%*sC<9WF)_m>0rm)mfEDDjzwmxa517@s_G
zG{@su@OH-i9hN__ekMuB)k!j$Bx4qj&M(9%@qaSY!7G*svm-hl=pjI8qY}Fcp`>#|
zaYB?6p)40G^Fz3D+;W{w@ea(K2{RoqQ|2M1GqjYUakIFGM5jo<F%N08G7q53z?O8m
zL-+r}Q>3%Xrel`xo32B9#&x5DR^~O`O{Tk>o5<SJsX3v#KcD2`FdYt@|2+$VvAG%8
zynj)#Q5F+x*n?go=_P|+%z~tI%Hzy;*r<%I*BS9!vWK#TWzz%su4(Dty!ykoHoj42
zDXg6mlPPgqyV)@F`?ZF3DNq8+2Cyy@TKTuG^JVeuj~m&}ptqO}5#VRraelVREQkO<
z-;VS1<fCXl$#-o2{38EDZ2B*@qyJ))nSV`L{An}Ff7+;G|9LaUe_mFRXVI(3Up6EE
zmrWvZ^!2YPARWq^E?(f_YWiy#r4FY5ukh|}jCqcp+J56vYj76Q?`Z5IrB!(&gFlWr
z-HthJ+>jQ=z4+aXd!aBc_CSJ36`2QZwleNkkrTa_%<oCYy%?7m)02=Z?uGI1fPWw9
z@}q1xkJb481%mQ7^vfB~UwVHl`}<^k2`^rn5zYT(ZXlf-QK_=-n<P(|e!{<R@ufe$
z6{k6;gK8?}%zRamb4qhg^OOOk>rZ_=%^zQzJCR`eoW#Gb_=aHBp`<Oy9y)U@m^WJZ
z;SDlN(Zsl1jj;`dj^xcF-w)Y6dVlPjLpBTz#`d(9X6@#SNKZ(QFopw}1$5;W3q}2O
z{mYk+Z^=W)eRrlKQ<C?|+Yhg9f3lN#nioa-YuWe9B}f)tPhSzezj8hDGvPl0`4JOH
z^-lSW)h)}{GgWd$OiuU}JYyadWOGj%c4co-^2ZXpQL%yDadJFRDAE&_o`2AE7+v<L
zT}y~5iNAns#5RO!+o6ZDA-xS5j1J{7RV*g8Wp0KNsmYL<@YF;sF0~VtmY<NZ@Lctd
z^xh}{<V7mt9*7FF3#0zrx^j>-`9;DmK)JGd<XvUoto6k$w~9INXbuNL-L;M^l*M%-
zt^wJDgO?fxL!@dQlYFC$Nq_2ikWpzKVQX``?xkOC&uSxN0-|ZNNyd~0pg68bqE%j$
zn|r;{q6`VF^@vUxSchhqZP)A(#!Z*f5iGCw$c^AT8SK*<?48VWOizY%5Z#`8CW<eM
z?CfT`<dTox;wvF*-sOq<9mF4{wDazgvdYkvuD$bnJq}Mw#-wCSf`9O<aZ6h?EqvP|
zGYvI0gt*I|nrc~@ju3P4@^pVsjJc$kO`+26?AT3w(4jC#FHd+v!V?mb0ANNZyreOw
zxNUk`>kYFD4Xcj=;g%wN5(wgELT@JGCV)*_HKNFA?@!vokxV1=>g-yv<~X-94o%|E
zZ%j&f5`<reXm97<!+(F06s6yQEXiYJmJGL3>S7PCkq1}Cjm&2dB#~m}G)9<4-(K>P
zfCh{?k%>Urq3Xi3<Ul)j_7*%!eWX2zaQ;FBz#Hce$a?@?DU)lrfs!G3IhD7vCcSWQ
zBU!GjCPeTetYDNIt5Ck)1ph`TCF;kTO)}m1t+d&VWV``jz<=Uk%^^Jyo%=pz!vmS{
zx)ITV%<m_|eF!ZfkdhhtxY~ye`D0t>is>{%PxC%y2N1cD|6<RI2Ll#av0%XFp@bpe
zD9^Fn>{B9)H>GKs0~=aI=z$i5b)B4s)!$7>Qewgq)r;KzG_J3w5j-B!C1dWX6?^6y
zLqk^OS%j4?P=7)sjWqIeM~CGW)deLcEk%-6DhZ&3SdKaxX_J(fAL78Q7$dH94VH?D
zyf{o+j3toLfyrE1AG8A%&lrK#l9HByIg$GJDfbN)Lc+@S-(k5Uu#9XGV3@(?z%P&r
z{2dXDl>3{YKWD>|Ap%Y2fcH&z-<<BseTFY5;u&-oV}HK{Q0Jf8DA&BPR~fQaGH7`)
zWD!|f|N5pK)_#(y1|k#u^p3w839x{Lo=xblMX;Bo4+}&^dP38E3{o$5Wbcn;wRBJm
zwD8I`yWiuX9?;O29@qve`W6B;^Q{6=+)Jc;K4fh@3zVX{ZvoR$FPm6B&-_t4;fE5w
zamY!%bbn%1X{fA^(R6bIG7x<u4u<q{HMG*)YEY&7(yLgx^88oE->uOMhMUGNRjI%_
z(IHrW#)x(?e;vd?xs8E$qD?!nQO=dd_!>a~jWh!J*&2_Ykg~ZD5?yvYmj(J>L?KR#
zAz&>bN}2vX4<REJj(GobR>h{&s0$599;7eI$$va2ooUh+N3^bDP^K1$E1sMztP#l?
zT4G7c0+U9k*p!q_X@}YF*a4l&eb?Z9)1q<OOZs1Y0a+0@$7_zZFq*~S=%koW$-fh`
z-~ld~;Ku3jf0FXUmp}Lw6Wy<zE&?gBmhyd>-l484>llUPl%J)DC|2^_&Gnb}x7q^w
z>3@Ctnt{#Bhiw~WYKUBbwZosu-Q*p;tAu!(7Z3F1O+h`fa*qL!E0tH`I{Ct`)%o1z
zm<(NXcWc!4pllWzujyqnT&go+ucE4oPMa`-6wgxQ{dk$&USFv*q4!dD50Zf-t$h?M
zPgXt54^@(5&-T4^#{@}wum@B%EsJ6eAAehcvr%eaP4^OU&&WW&cF20BHaB+&En!V_
zSf;ZQ`^RuorT=uiWk-@^Crnaf5$GgTDwqnvS9kP_I5OUo3Xa540>gqu@zP?2rSGzm
z^a*jG6dT(OcZZroH=disie^uRBneXe6LOcuE_sPBk25u!$bYAkv^YiK{cz*Ssei<K
zY6;)OWpJSclU3sARZQZ2Lvvl?i29|*8Cs51eYyTACrpQ3t!3RIf$RO$e52Xkh?`GN
zO`$03_L2?>Vs9_D5tk@+Db=F(=|Vi|dajKTJz#NJ_Vk{3Zan={end~`Gs)Xhwn^OL
zvade9XEO2<DM?P;o&`mj{4nJZ8-IaGDpQJhUgPzXsot)XR&JvZ?$BDaL!%eZ4Wzy<
zakiF{;<k9){DR9Lnij95>CH)&zc~Nciirs3ie-MR8{E^W_(FS38NxKfHP<YgrAFC^
zcKGqh)NqzUQgdRg5^?geyi?awN3*A#X?q$OVxv8`BCOF?vi!H*y2gDStYOl=-+5`c
z{{4-T-6jid!J%3urGN1Y9*2O4lKy6KVB_>(NyQ_6B6)Jd6d{vl6(R?{6o>!sx*^5g
qSLlD9tR`t19DUqj>62>!)bk~cXR5_8y5|cgQU<Yjs{aRFZ)~E(7~aYN

diff --git a/sed/develop/py-modindex.html b/sed/develop/py-modindex.html
index d44df03..eeed33c 100644
--- a/sed/develop/py-modindex.html
+++ b/sed/develop/py-modindex.html
@@ -41,7 +41,6 @@
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'py-modindex';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/search.html b/sed/develop/search.html
index 5575227..a555143 100644
--- a/sed/develop/search.html
+++ b/sed/develop/search.html
@@ -40,7 +40,6 @@
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'search';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/searchindex.js b/sed/develop/searchindex.js
index dd63a1a..887e7d3 100644
--- a/sed/develop/searchindex.js
+++ b/sed/develop/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"docnames": ["index", "misc/contributing", "misc/contribution", "misc/maintain", "sed/api", "sed/binning", "sed/calibrator", "sed/config", "sed/core", "sed/dataset", "sed/dfops", "sed/diagnostic", "sed/io", "sed/loader", "sed/metadata", "tutorial/1_binning_fake_data", "tutorial/2_conversion_pipeline_for_example_time-resolved_ARPES_data", "tutorial/3_metadata_collection_and_export_to_NeXus", "tutorial/4_hextof_workflow", "tutorial/6_binning_with_time-stamped_data", "tutorial/7_correcting_orthorhombic_symmetry", "tutorial/8_jittering_tutorial", "user_guide/advanced_topics", "user_guide/config", "user_guide/index", "user_guide/installation", "workflows/index"], "filenames": ["index.md", "misc/contributing.rst", "misc/contribution.md", "misc/maintain.rst", "sed/api.rst", "sed/binning.rst", "sed/calibrator.rst", "sed/config.rst", "sed/core.rst", "sed/dataset.rst", "sed/dfops.rst", "sed/diagnostic.rst", "sed/io.rst", "sed/loader.rst", "sed/metadata.rst", "tutorial/1_binning_fake_data.ipynb", "tutorial/2_conversion_pipeline_for_example_time-resolved_ARPES_data.ipynb", "tutorial/3_metadata_collection_and_export_to_NeXus.ipynb", "tutorial/4_hextof_workflow.ipynb", "tutorial/6_binning_with_time-stamped_data.ipynb", "tutorial/7_correcting_orthorhombic_symmetry.ipynb", "tutorial/8_jittering_tutorial.ipynb", "user_guide/advanced_topics.md", "user_guide/config.md", "user_guide/index.md", "user_guide/installation.md", "workflows/index.md"], "titles": ["SED documentation", "Contributing to sed", "Development", "How to Maintain", "API", "Binning", "Calibrator", "Config", "Core", "Dataset", "Dataframe Operations", "Diagnostics", "IO", "Data loader", "Metadata", "Binning demonstration on locally generated fake data", "Demonstration of the conversion pipeline using time-resolved ARPES data stored on Zenodo", "Binning with metadata generation, and storing into a NeXus file", "Tutorial for binning data from the HEXTOF instrument at FLASH", "Binning of temperature-dependent ARPES data using time-stamped external temperature data", "Distortion correction with orthorhombic symmetry", "Correct use of Jittering", "&lt;no title&gt;", "Configuration", "User Guide", "Installation", "Workflows"], "terms": {"singl": [0, 5, 6, 8, 11, 12, 13, 15, 17, 20, 23], "event": [0, 3, 6, 8, 15, 19, 21, 23, 26], "data": [0, 1, 3, 4, 5, 6, 8, 9, 10, 12, 14, 22, 23, 24, 26], "frame": [0, 8], "i": [0, 1, 3, 5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 25], "collect": [0, 6, 8, 13, 16, 17, 18, 19, 20, 23], "routin": [0, 16, 23], "util": [0, 5], "handl": [0, 11, 13], "photoelectron": [0, 18], "resolv": [0, 13, 23, 24], "datastream": 0, "It": [0, 3, 6, 13, 18, 21, 23], "featur": [0, 1, 5, 6, 8, 9, 16, 19, 23], "lazi": 0, "evalu": [0, 18], "datafram": [0, 4, 5, 6, 8, 13, 16, 19, 20, 21, 23, 26], "process": [0, 1, 3, 6, 9, 13, 17, 18, 23], "us": [0, 1, 3, 6, 8, 10, 12, 13, 15, 17, 18, 20, 22, 23, 24, 25], "dask": [0, 5, 6, 8, 10, 13, 16, 18, 20, 23], "numba": [0, 5, 8, 15, 23], "acceler": 0, "multi": 0, "dimension": [0, 5, 8, 10, 12, 13, 18], "bin": [0, 4, 6, 8, 11, 13, 21, 22, 23, 24, 25, 26], "calibr": [0, 4, 8, 17, 21, 23, 26], "correct": [0, 8, 12, 17, 19, 22, 23, 24, 26], "trarp": [0, 17, 19, 23], "time": [0, 6, 8, 10, 12, 13, 15, 17, 20, 21, 22, 23, 24, 26], "angl": [0, 6, 8, 16, 17, 19, 20], "photoemiss": [0, 1, 5], "spectroscopi": [0, 1], "dataset": [0, 3, 4, 6, 8, 13, 15, 16, 17, 18, 19, 20, 21, 23], "The": [0, 1, 3, 5, 6, 7, 8, 9, 10, 12, 13, 15, 16, 17, 18, 21, 23], "packag": [0, 3, 10, 14, 16, 17, 21, 23], "ensur": [0, 1], "proven": 0, "fair": 0, "through": [0, 1, 16], "metadata": [0, 4, 6, 8, 12, 13, 18, 23, 24], "track": [0, 5, 18], "usag": [0, 13], "defin": [0, 5, 6, 8, 9, 13, 18, 20, 23], "nexu": [0, 8, 12, 23, 24], "format": [0, 1, 6, 7, 8, 12, 13, 21, 23], "we": [0, 1, 9, 10, 15, 16, 17, 18, 19, 20, 21, 23], "introduc": [0, 1], "differ": [0, 3, 6, 7, 8, 13, 16, 17, 18, 20, 21, 23], "function": [0, 1, 6, 7, 8, 10, 11, 13, 15, 16, 18, 19, 21, 23], "sever": 0, "step": [0, 3, 5, 6, 8, 13, 21, 23], "instal": [0, 1, 3], "basic": 0, "concept": 0, "advanc": 0, "topic": 0, "notebook": [0, 3, 8, 17, 18, 23, 25], "demonstr": [0, 20, 24], "end": [0, 1, 5, 6, 8, 13, 18, 21, 23], "analysi": 0, "workflow": [0, 2, 3, 6, 8, 20, 23], "tutori": [0, 3, 16, 17, 19, 20, 21, 26], "from": [0, 1, 3, 5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 17, 19, 20, 21, 23, 26], "hextof": [0, 8, 13, 26], "instrument": [0, 13, 17, 23, 26], "flash": [0, 13, 26], "core": [0, 4, 5, 7, 10, 13, 14, 18, 23], "oper": [0, 4, 21], "loader": [0, 2, 4, 6, 8, 16, 19, 23], "diagnost": [0, 4, 6, 8, 23], "io": [0, 4, 17], "config": [0, 1, 3, 4, 6, 8, 9, 13, 16, 17, 19, 20, 21, 23, 26], "inform": [0, 1, 6, 8, 9, 12, 13, 18, 19, 21, 23], "about": [0, 9, 16, 18], "behind": [0, 21], "thi": [0, 1, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 25], "theme": 0, "how": [0, 2, 5, 6, 8, 17, 18, 20], "you": [0, 1, 3, 15, 16, 17, 18, 19, 20, 21, 25], "can": [0, 1, 3, 5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 18, 19, 20, 21, 23, 25], "develop": [0, 24], "maintain": [0, 1, 2], "welcom": 1, "project": [1, 3], "collabor": 1, "open": [1, 3, 8, 16, 23], "commun": 1, "multidimension": [1, 5, 6, 13, 23], "whether": [1, 6, 8, 9, 10, 13, 16, 23], "ar": [1, 3, 5, 6, 7, 8, 9, 10, 12, 13, 16, 17, 18, 19, 20, 21, 23], "beamlin": [1, 23], "scientist": 1, "hope": 1, "creat": [1, 3, 7, 9, 13, 16, 17, 19, 20, 21, 25], "your": [1, 18, 21, 25], "would": [1, 3, 9, 15], "like": [1, 5, 12, 18], "add": [1, 6, 8, 9, 10, 12, 13, 14, 19, 21, 26], "new": [1, 3, 6, 9, 10, 13, 14, 16, 17, 18, 19, 20, 21, 25], "guid": 1, "walk": 1, "set": [1, 3, 5, 6, 7, 8, 9, 13, 16, 17, 18, 19, 20, 21], "up": [1, 3, 6, 13, 21], "environ": [1, 3, 25], "clone": [1, 3, 25], "repositori": [1, 3, 25], "If": [1, 3, 5, 6, 8, 9, 10, 12, 13, 14, 16, 18, 21, 23, 25], "member": 1, "local": [1, 3, 6, 8, 13, 16, 17, 18, 19, 23, 24, 25], "machin": [1, 17, 21], "git": [1, 3, 25], "http": [1, 3, 6, 9, 17, 23, 25], "github": [1, 3, 17, 25], "com": [1, 3, 9, 25], "opencomp": [1, 3, 25], "fork": 1, "yourusernam": 1, "python": [1, 23, 25], "poetri": [1, 3], "have": [1, 3, 6, 8, 10, 12, 16, 18, 21, 23, 25], "3": [1, 5, 6, 8, 9, 12, 13, 15, 17, 18, 19, 20, 21, 23, 25], "8": [1, 8, 13, 15, 16, 17, 18, 19, 20, 21, 23], "9": [1, 16, 17, 18, 19, 20, 21, 23, 25], "10": [1, 3, 16, 17, 18, 19, 20, 21, 23], "11": [1, 16, 17, 18, 19, 20, 21, 23], "pip": [1, 3, 25], "pipx": [1, 3], "depend": [1, 3, 8, 13, 16, 22, 24, 25], "navig": [1, 3], "directori": [1, 3, 7, 9, 13, 18, 23], "includ": [1, 3, 6, 8, 10, 11, 12, 13, 16, 17, 18, 19, 23], "ones": [1, 6], "dev": [1, 25], "assum": [1, 6, 12, 16], "version": [1, 3, 6, 13, 24], "pre": [1, 7, 8, 16], "commit": 1, "hook": 1, "To": [1, 3, 5, 6, 16, 18, 21], "code": [1, 5, 6, 13], "correctli": 1, "branch": [1, 3], "bug": 1, "fix": [1, 6, 10, 16, 18], "make": [1, 3, 5, 11, 18, 23, 25], "chang": [1, 6, 8, 10, 23, 25], "checkout": 1, "b": [1, 3, 6, 8, 18, 19, 23], "write": [1, 3, 8, 12, 18], "test": [1, 9], "cover": [1, 6, 8, 10], "run": [1, 3, 8, 10, 13, 16, 23, 26], "broken": [1, 23], "pytest": 1, "clear": 1, "concis": 1, "messag": [1, 14], "m": [1, 13, 15, 20, 23, 25], "push": [1, 3], "origin": [1, 6, 8, 16, 20, 21], "against": 1, "main": [1, 3, 6, 9], "pleas": 1, "give": [1, 9, 14, 15, 18, 23], "brief": 1, "descript": [1, 13, 17], "made": [1, 5, 8], "an": [1, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16, 17, 18, 19, 23, 25], "issu": [1, 3, 10, 21], "refer": [1, 6, 8, 16, 18, 20, 23], "number": [1, 3, 5, 6, 8, 10, 11, 12, 13, 14, 15, 16, 18, 20, 21, 23], "befor": [1, 5, 6, 8, 10, 18, 21, 23], "merg": [1, 6, 7, 14], "must": [1, 8, 10, 16], "pass": [1, 5, 6, 7, 8, 10, 13, 21, 23], "follow": [1, 3, 5, 6, 8, 12, 16, 17, 20, 23], "check": [1, 3, 5, 6, 21], "lint": 1, "review": 1, "A": [1, 3, 5, 6, 7, 8, 13, 15, 18, 23], "provid": [1, 5, 6, 7, 8, 9, 10, 12, 13, 14, 16, 19, 23], "feedback": 1, "necessari": [1, 3, 23, 26], "rebas": 1, "date": 1, "latest": [1, 3], "onc": [1, 18, 25], "all": [1, 5, 6, 8, 9, 10, 11, 13, 16, 18, 21, 23, 25], "success": [1, 3, 23], "approv": 1, "below": [1, 5, 7, 18, 23, 25], "should": [1, 5, 6, 8, 9, 12, 17, 18, 21, 23], "subclass": [1, 6], "base": [1, 6, 7, 8, 9, 10, 11, 13, 14, 16, 20, 23], "baseload": [1, 6], "implement": [1, 6, 8, 9, 13, 15, 21, 23], "few": 1, "method": [1, 5, 6, 8, 13, 14, 15, 16, 18, 19, 21, 23], "see": [1, 3, 6, 8, 9, 13, 18, 21, 23, 25], "abstract": 1, "more": [1, 10, 12, 18, 21], "class": [1, 6, 8, 9, 13, 14, 16, 17, 18, 19], "__name__": 1, "attribut": [1, 6, 8, 12, 13, 16, 18, 23], "which": [1, 5, 6, 8, 9, 10, 13, 14, 16, 17, 18, 19, 20, 21, 23], "select": [1, 3, 6, 8, 13, 16, 20, 23], "user": [1, 3, 5, 6, 7, 13, 15, 17, 19, 20, 23, 25], "file": [1, 3, 5, 6, 7, 8, 9, 12, 13, 16, 19, 20, 21, 24, 26], "gener": [1, 3, 6, 8, 13, 16, 21, 23, 24, 26], "exampl": [1, 5, 6, 8, 15, 16, 17, 19, 20, 25], "At": [1, 3], "modul": [1, 5, 6, 7, 8, 9, 10, 11, 12, 13, 23], "yournameload": 1, "variabl": [1, 11, 16, 18], "regist": 1, "registri": 1, "interfac": 1, "also": [1, 3, 5, 6, 7, 8, 9, 10, 16, 18, 19, 21, 23], "small": [1, 15, 21], "document": [1, 2, 9], "doc": [1, 3, 16, 17, 18, 19, 20, 21], "rst": 1, "contribut": 2, "sed": [2, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 25], "get": [2, 13, 16, 17, 19, 20, 21, 26], "start": [2, 5, 6, 8, 13, 16, 18, 23], "pull": [2, 3, 16, 19, 25], "request": [2, 3, 5, 13, 18, 23, 25], "guidelin": 2, "releas": 2, "build": 3, "cd": [3, 25], "copi": [3, 8, 9, 13, 19, 23], "do": [3, 6, 8, 18, 20, 25], "slow": [3, 8], "down": 3, "significantli": 3, "requir": [3, 5, 6, 13, 16, 17, 25], "two": [3, 6, 8, 9, 10, 13, 16, 18, 20], "so": [3, 12, 18, 23], "20": [3, 16, 17, 18, 19, 20, 21, 23], "gb": 3, "free": [3, 6, 16, 17, 18, 19, 20, 21, 25], "space": [3, 6, 8, 13, 16, 17, 18, 19, 20, 21], "cp": 3, "r": [3, 12, 15, 16, 19], "virtual": [3, 25], "shell": 3, "sphinx": 3, "html": [3, 6, 17], "_build": 3, "view": [3, 6, 8, 18], "design": [3, 6], "automat": [3, 12, 13], "deploi": 3, "addition": 3, "manual": [3, 8, 12, 13, 16, 17, 20], "trigger": 3, "action": 3, "tab": 3, "here": [3, 5, 6, 16, 18, 23], "": [3, 5, 6, 7, 8, 9, 10, 12, 13, 15, 17, 18, 21, 23], "work": [3, 6, 7, 8, 9, 16, 17, 18, 19, 20, 21, 23, 25], "configur": [3, 7, 9, 12, 13, 16, 17, 18, 21, 24], "specif": [3, 6, 8, 9, 13, 18], "path": [3, 6, 7, 8, 9, 12, 13, 16, 17, 19, 20, 21, 23, 26], "relat": [3, 6, 8, 18], "execut": [3, 9], "possibl": [3, 6, 10, 16], "workflow_dispatch": 3, "pyproject": 3, "toml": 3, "yml": 3, "permiss": 3, "github_token": 3, "allow": [3, 5, 6, 9, 10, 18, 23], "deploy": 3, "page": 3, "read": [3, 6, 8, 12, 13, 16, 18, 23], "access": [3, 5, 8, 12, 13, 18], "content": [3, 7, 13], "id": [3, 6, 8, 13, 16, 23], "token": [3, 13, 23], "concurr": 3, "onli": [3, 5, 6, 8, 9, 10, 12, 13, 18, 21], "one": [3, 5, 6, 8, 9, 10, 12, 13, 14, 16, 18, 21, 23], "prevent": 3, "conflict": 3, "futur": 3, "idea": 3, "queu": 3, "between": [3, 5, 6, 8, 10, 13, 18, 21, 23], "progress": [3, 5, 8, 23], "skip": [3, 25], "group": [3, 13, 23], "cancel": 3, "fals": [3, 5, 6, 7, 8, 9, 10, 13, 16, 17, 18, 19, 20, 21, 23], "divid": 3, "job": [3, 23], "out": [3, 6, 8, 13], "pandoc": 3, "remov": [3, 13, 18, 23], "unnecessari": 3, "download": [3, 9, 16, 17, 18, 19, 20, 21], "raw": [3, 13, 18, 23], "built": 3, "go": 3, "click": [3, 16], "On": [3, 25], "tag": 3, "press": 3, "draft": 3, "choos": [3, 6, 8, 16, 23], "type": [3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 18, 21, 23, 25], "name": [3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 20, 23, 25], "sure": [3, 18, 23], "v": [3, 17, 23], "prefix": [3, 13, 23], "e": [3, 5, 6, 8, 11, 16, 17, 18, 21, 23, 25], "g": [3, 6, 8, 11, 16, 18, 21, 23], "v0": 3, "1": [3, 5, 6, 8, 9, 10, 13, 15, 17, 18, 19, 20, 21, 23], "confirm": [3, 13], "creation": 3, "note": [3, 13, 18, 21], "edit": [3, 25], "appropri": 3, "auto": [3, 8, 13, 16], "updat": [3, 6, 13], "pr": 3, "publish": 3, "entri": [3, 5, 6, 8, 14, 23], "upload": 3, "pypi": [3, 25], "visit": 3, "org": [3, 9], "processor": [3, 8, 16, 17, 19, 20, 21, 23, 25, 26], "0": [3, 5, 6, 8, 9, 10, 13, 15, 16, 17, 18, 19, 20, 21, 23], "ha": [3, 5, 6, 8, 9, 10, 13, 16, 18, 23], "been": [3, 8, 12, 16], "don": [3, 8, 16], "t": [3, 6, 8, 9, 12, 16, 17, 18, 19, 20, 21, 23], "monitor": [3, 23], "error": [3, 5, 9, 13, 14], "occur": [3, 13, 23], "dure": [3, 6, 13, 18], "understand": 3, "respons": 3, "everi": [3, 18, 23], "5": [3, 5, 6, 8, 9, 10, 15, 17, 18, 19, 20, 21, 23], "prereleas": 3, "increment": [3, 13], "6a0": 3, "6a1": 3, "easi": [5, 8, 9, 12], "api": [5, 8, 12, 23], "bin_datafram": [5, 6, 8, 15], "df": [5, 6, 10, 13, 15], "100": [5, 6, 8, 9, 16, 17, 18, 19, 20, 21, 23], "ax": [5, 6, 8, 10, 12, 15, 16, 17, 18, 19, 21, 23], "none": [5, 6, 7, 8, 10, 11, 12, 13, 14], "rang": [5, 6, 8, 11, 13, 17, 18, 20, 21, 23], "hist_mod": [5, 8, 15, 23], "mode": [5, 6, 8, 12, 13, 23, 25], "fast": [5, 8, 23], "jitter": [5, 8, 10, 16, 17, 19, 22, 23, 24, 26], "pbar": [5, 8, 23], "true": [5, 6, 7, 8, 9, 10, 11, 13, 15, 16, 17, 18, 19, 20, 23], "n_core": [5, 8], "threads_per_work": [5, 8, 23], "4": [5, 6, 8, 9, 12, 15, 17, 18, 19, 20, 21, 23], "threadpool_api": [5, 8, 23], "bla": [5, 8, 23], "return_partit": 5, "kwd": [5, 6, 8, 10, 11, 12, 13], "sourc": [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16, 23, 25], "comput": [5, 8, 10, 20, 21, 23, 26], "n": [5, 6, 8, 13, 15, 16, 18, 23], "histogram": [5, 8, 11, 19, 23, 26], "column": [5, 6, 8, 10, 11, 13, 15, 16, 17, 18, 19, 20, 21, 23], "parallel": [5, 6, 8, 18, 23], "paramet": [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16, 17, 20, 23, 26], "perform": [5, 6, 13, 16, 18, 19], "int": [5, 6, 8, 10, 11, 13, 18], "dict": [5, 6, 7, 8, 9, 11, 12, 13, 14], "sequenc": [5, 6, 8, 10, 11, 12, 13], "np": [5, 6, 8, 10, 11, 12, 13, 15, 16, 19, 20], "ndarrai": [5, 6, 8, 10, 11, 12, 13], "tupl": [5, 6, 8, 11, 13], "option": [5, 6, 7, 8, 10, 11, 12, 13, 14, 18, 20, 23], "definit": [5, 8, 12, 23], "ani": [5, 7, 8, 9, 12, 13, 14, 16, 21, 23], "case": [5, 6, 8, 14], "integ": [5, 6, 8, 18, 21], "describ": [5, 6, 8, 12, 20], "dimens": [5, 6, 8, 10, 12, 16, 21], "well": [5, 6, 16, 20, 21], "contain": [5, 6, 7, 8, 10, 11, 12, 13, 14, 16, 17, 18, 19, 20, 21, 23], "each": [5, 6, 8, 10, 11, 13, 15, 16, 18, 23], "arrai": [5, 6, 8, 12, 13, 16, 18, 19, 20], "center": [5, 6, 8, 16, 18, 23], "dictionari": [5, 6, 7, 8, 9, 11, 12, 13, 14, 16, 18, 23], "kei": [5, 6, 7, 8, 12, 13, 14, 23], "abov": [5, 8, 16, 18, 21, 23], "valu": [5, 6, 7, 8, 10, 11, 12, 13, 16, 17, 19, 21, 23, 26], "last": [5, 6, 8], "take": [5, 7, 8, 9, 10, 13, 16, 17, 18, 19, 20], "prioriti": [5, 8, 13], "over": [5, 6, 7, 8, 13, 15], "argument": [5, 6, 7, 8, 10, 11, 12, 13], "default": [5, 6, 7, 8, 10, 11, 12, 13, 14, 16, 17, 18, 19, 20, 21], "str": [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16, 18, 19], "calcul": [5, 6, 8, 13, 16, 17, 18, 19, 20, 23], "order": [5, 6, 7, 8, 12, 13, 18, 23], "result": [5, 6, 8, 13, 26], "axi": [5, 6, 8, 11, 12, 16, 19, 20, 21, 23, 26], "float": [5, 6, 8, 10, 11, 13, 18], "point": [5, 6, 8, 16, 18, 19, 20, 23], "given": [5, 6, 7, 8, 9, 10, 13, 17, 23], "numpi": [5, 6, 8, 12, 13, 15, 16, 19, 20, 23], "histogramdd": 5, "power": [5, 23], "similar": [5, 9, 10, 13], "partit": [5, 8, 10, 18], "combin": [5, 8, 13, 23], "recombin": [5, 23], "lean": [5, 8], "store": [5, 6, 8, 9, 13, 18, 19, 23, 24], "list": [5, 6, 8, 9, 10, 11, 13, 16, 18, 20, 23], "legaci": [5, 8], "union": [5, 6, 7, 8, 10, 12, 13], "appli": [5, 6, 8, 10, 16, 17, 18, 19, 20, 21, 23], "specifi": [5, 6, 8, 9, 10, 13, 16], "amplitud": [5, 6, 8, 10, 16, 21, 23], "normal": [5, 6, 7, 8, 10, 16, 18, 19, 21, 23], "uniform": [5, 6, 8, 10, 21], "nois": [5, 8, 10, 21], "look": [5, 6, 8, 9, 13, 18, 21, 23], "show": [5, 6, 8, 16, 17, 18, 19], "behavior": [5, 9, 14], "string": [5, 7, 12, 13, 18], "warn": [5, 12, 18], "most": [5, 13, 23], "approach": 5, "call": [5, 15, 18], "much": [5, 10], "faster": [5, 15], "bool": [5, 6, 7, 8, 9, 10, 11, 13], "tqdm": [5, 8], "bar": [5, 8, 23], "cpu": [5, 8, 15], "avail": [5, 6, 8, 9, 13, 18], "n_cpu": [5, 8], "limit": [5, 8, 16], "thread": [5, 8, 23], "multiprocess": [5, 8], "spawn": [5, 8], "return": [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 23], "hypercub": 5, "where": [5, 6, 7, 8, 9, 13, 16, 18, 21, 23], "correspond": [5, 6, 8, 10, 12, 13, 16, 17, 21, 23], "keyword": [5, 6, 8, 9, 11, 12, 13, 23], "rais": [5, 6, 7, 8, 12, 13, 14], "unimpl": 5, "try": [5, 9, 15, 17, 21, 23], "valueerror": [5, 6, 8, 9, 12, 13], "when": [5, 6, 8, 9, 14], "mismatch": 5, "repres": [5, 8, 12, 13], "xarrai": [5, 8, 12, 18], "object": [5, 6, 8, 9, 13, 14, 17, 18], "xr": [5, 6, 8, 12, 18], "dataarrai": [5, 6, 8, 12, 18], "bin_partit": [5, 15], "part": [5, 15, 16], "return_edg": 5, "skip_test": 5, "pd": [5, 6, 8, 10, 13, 15], "usual": [5, 18], "d": [5, 6, 8, 16, 18, 23], "edg": [5, 8, 11], "turn": 5, "off": [5, 13, 16], "input": [5, 6, 8, 12, 13, 16, 23], "transform": [5, 6, 8, 16], "intend": [5, 23, 25], "intern": 5, "might": [5, 6, 8, 16, 17, 18, 19, 20], "difficult": 5, "attributeerror": [5, 12], "congruent": 5, "keyerror": 5, "along": [5, 6, 8, 16, 18, 21], "present": [5, 6, 7, 8, 9, 13, 14, 16, 17, 18, 19, 20, 21, 23], "2": [5, 6, 8, 10, 12, 13, 15, 17, 18, 19, 20, 21, 23], "element": [5, 6, 8, 12], "returnedg": 5, "otherwis": [5, 6, 10, 12, 14, 18], "hist": [5, 8], "precompil": 5, "numba_bin": 5, "binsearch": 5, "val": [5, 6], "bisect": 5, "index": [5, 6, 10, 13, 18], "search": [5, 6, 7, 13], "find": [5, 6, 8, 23, 26], "highest": [5, 6], "left": [5, 16, 18], "outsid": [5, 8, 16], "numba_histogramdd": 5, "sampl": [5, 6, 17, 23, 26], "behav": [5, 8], "total": [5, 15, 18], "uint32": [5, 18], "wa": [5, 8, 16, 18, 19], "chosen": 5, "becaus": 5, "signific": [5, 13, 15], "improv": [5, 15, 18], "uint64": 5, "larg": [5, 21], "volum": [5, 6], "Be": 5, "awar": 5, "caus": 5, "overflow": 5, "veri": [5, 21], "exceed": 5, "3e9": 5, "count": [5, 11, 13, 16, 18, 19], "never": [5, 15, 18], "happen": 5, "realist": 5, "experi": [5, 23], "size": [5, 6, 10, 13, 18, 21, 23], "shape": [5, 6, 8], "In": [5, 6, 8, 15, 16, 17, 18, 19, 23], "typeerror": [5, 7, 8, 12], "wrong": 5, "runtimeerror": 5, "after": [5, 6, 9, 10, 16, 18, 21], "simplify_binning_argu": 5, "convert": [5, 6, 8, 12, 13, 17, 18, 21, 23], "flexibl": 5, "simpl": [5, 15, 18], "mimic": 5, "bin_edges_to_bin_cent": 5, "bin_edg": 5, "1d": [5, 6, 11], "bin_cent": 5, "bin_centers_to_bin_edg": 5, "distort": [6, 8, 17, 19, 22, 23, 24], "mostli": [6, 13, 23], "port": [6, 13], "mpe": [6, 13, 16, 17], "kit": [6, 13], "momentumcorrector": [6, 8], "bin_rang": 6, "rotsym": 6, "6": [6, 8, 15, 16, 17, 18, 19, 20, 21, 23], "hypervolum": 6, "rotat": [6, 8, 16, 23], "symmetri": [6, 8, 16, 22, 23, 24], "properti": [6, 8, 9, 13, 14], "detect": [6, 8, 13, 16], "symmetr": [6, 16], "self": [6, 8], "deriv": [6, 21], "exist": [6, 7, 8, 9, 13, 14, 16, 17, 18, 19, 20, 21], "vert": 6, "symscor": 6, "score": 6, "load_data": 6, "load": [6, 7, 8, 9, 12, 13, 23, 26], "2d": [6, 10], "3d": 6, "either": [6, 8, 16, 18, 19, 20, 25], "need": [6, 8, 9, 12, 16, 18, 20, 23], "thei": [6, 7, 8, 18, 21, 23], "determin": [6, 8, 13, 16, 18], "coord": [6, 12, 15], "fit": [6, 16, 18], "select_slic": 6, "plane": [6, 8, 16, 17, 19, 20], "width": [6, 8, 16, 17, 19, 20, 23], "interact": [6, 8, 16, 18], "panel": [6, 8], "hyper": 6, "slice": [6, 8, 16, 18, 19, 20, 23], "initi": [6, 8, 10, 13, 21, 23], "slider": [6, 8], "imag": [6, 8, 16, 21], "directli": [6, 8, 15, 16, 18, 19, 23], "selector": [6, 13], "extract": [6, 8, 9, 13, 16, 23], "construct": [6, 13], "stop": [6, 9], "sum": [6, 15, 16, 19], "them": [6, 8, 9, 14, 16, 18, 23], "particular": 6, "alreadi": [6, 9, 14, 16, 17, 18, 19, 20, 21], "add_featur": 6, "direct": [6, 8, 18, 23], "ccw": 6, "landmark": [6, 16, 20], "possibli": [6, 7], "peak": [6, 8, 16, 18, 20, 23], "Its": [6, 8], "equal": [6, 20, 23], "symtyp": 6, "doe": [6, 9, 12, 13, 15, 18], "match": 6, "feature_extract": [6, 8], "feature_typ": 6, "current": [6, 7, 8, 9, 10, 13, 16, 18, 23], "circular": 6, "reorder": 6, "cw": 6, "extra": [6, 8], "pointop": 6, "peakdetect2d": 6, "notimplementederror": [6, 12], "undefin": [6, 13], "feature_select": [6, 8], "include_cent": [6, 8, 16, 19, 20, 23], "centroid": 6, "registr": 6, "omit": [6, 8], "fill": [6, 10, 13, 17, 18, 21, 23], "zero": [6, 18], "valid": [6, 8, 13], "found": [6, 7, 8, 12, 13, 18], "ge": 6, "coordin": [6, 8, 12, 16, 17, 18, 23], "calc_geometric_dist": 6, "geometr": [6, 16], "distanc": [6, 8, 16, 20, 21, 23], "involv": 6, "vertic": [6, 11], "vertex": 6, "nearest": 6, "neighbor": [6, 21], "calc_symmetry_scor": 6, "quantiti": 6, "spline_warp_estim": [6, 8], "use_cent": [6, 8, 23], "fixed_cent": 6, "interp_ord": 6, "ascal": [6, 20], "verbos": [6, 7, 8, 16, 18, 20], "estim": 6, "spline": [6, 8, 16, 23], "deform": [6, 8, 16, 17, 19, 20], "field": [6, 8, 16, 17, 19, 20, 23], "thin": [6, 16, 20], "plate": 6, "interpol": [6, 8, 10], "scipi": [6, 8], "ndimag": 6, "map_coordin": 6, "scale": [6, 8, 10, 16, 18, 23], "rel": [6, 20], "orthogon": 6, "orthorhomb": [6, 22, 24], "system": [6, 7, 13, 18, 20, 23], "locat": [6, 9, 13, 16, 17, 18, 19, 20, 21, 23], "princip": [6, 17], "x": [6, 8, 10, 12, 16, 17, 18, 19, 20, 21, 23], "y": [6, 8, 10, 12, 16, 17, 18, 19, 20, 21, 23], "brillouin": [6, 16], "zone": [6, 16], "expect": 6, "report": [6, 7, 13, 23], "posit": [6, 8, 16, 17, 20, 23], "row": [6, 8, 10, 15], "pouter_ord": 6, "target": [6, 13, 16, 20], "empti": [6, 7, 13], "rotvertexgener": 6, "new_cent": 6, "lmkcenter": 6, "col": [6, 8, 10, 15, 20, 21], "targcent": 6, "apply_correct": [6, 8], "dfield": 6, "stack": [6, 8, 12, 18], "rdeform_field": [6, 8], "cdeformfield": 6, "reset_deform": 6, "reset": [6, 8, 13], "coordtyp": 6, "cartesian": 6, "update_deform": 6, "rdeform": 6, "cdeform": 6, "coordinate_transform": 6, "transform_typ": 6, "keep": [6, 7, 8, 14, 18], "mapkwd": 6, "pixel": [6, 8, 23], "wise": 6, "mean": [6, 8, 10, 16, 18, 23], "translat": [6, 8, 16], "rotation_auto": 6, "scaling_auto": 6, "homographi": 6, "miss": [6, 7, 8, 13], "addit": [6, 7, 8, 10, 11, 12, 13, 23], "sym": 6, "pose_adjust": [6, 8, 16, 17, 19, 20], "adjust": [6, 8, 16, 17, 19, 21], "first": [6, 7, 8, 13, 15, 16, 18, 21, 23], "next": [6, 8, 16, 18], "around": [6, 8, 16, 19, 23], "256": [6, 20, 23], "xtran": [6, 8, 16, 17, 19, 20], "ytran": [6, 8, 16, 17, 19, 20], "calc_inverse_dfield": 6, "invers": [6, 8, 16, 17, 19, 20], "lower": [6, 10, 19], "cmap": 6, "terrain_r": 6, "figsiz": [6, 15, 16, 18, 19], "annot": 6, "backend": [6, 8, 11], "matplotlib": [6, 8, 11, 15, 16, 17, 18, 19, 20, 21], "imkwd": 6, "scatterkwd": 6, "cross": 6, "crosshair": 6, "crosshair_radii": 6, "50": [6, 15, 16, 17, 18, 23], "150": [6, 16, 18, 21], "crosshair_thick": 6, "displai": [6, 8, 23], "plot": [6, 8, 11, 15, 16, 19, 20, 21, 26], "figur": [6, 11, 18, 19, 20, 21], "upper": 6, "colormap": 6, "visual": [6, 17, 23, 26], "static": [6, 9, 23], "render": 6, "bokeh": [6, 8, 11], "pyplot": [6, 8, 15, 16, 18, 19, 20, 21], "imshow": [6, 15], "scatter": 6, "horizont": [6, 11], "line": [6, 16, 18, 19, 21], "pcent": [6, 16, 20], "circl": 6, "radii": 6, "activ": [6, 25], "thick": 6, "procedur": 6, "select_k_rang": 6, "point_a": [6, 8, 16, 20], "point_b": [6, 8, 16, 20], "k_distanc": [6, 8, 16], "k_coord_a": [6, 8, 16, 20], "k_coord_b": [6, 8, 16, 20], "equiscal": [6, 8, 16, 20], "k": [6, 8, 16, 20, 23], "altern": [6, 7, 8, 16, 21, 23], "both": [6, 8, 9, 13, 14, 18, 23], "detail": [6, 7, 8, 21], "center_pixel": [6, 8, 23], "known": [6, 16, 21], "adopt": 6, "situat": [6, 21], "close": [6, 21], "separ": [6, 13, 18], "suffici": 6, "absolut": [6, 8, 16, 23], "column_index": 6, "row_index": 6, "slice_correct": 6, "extent": [6, 17], "grid": [6, 8, 11, 23], "mesh": 6, "pcolormesh": 6, "coeff": 6, "coeffici": 6, "x_center": [6, 23], "y_center": [6, 23], "cstart": [6, 23], "rstart": [6, 23], "detector": [6, 13, 16, 18, 23], "cstep": [6, 23], "rstep": [6, 23], "x_column": [6, 10, 23], "y_column": [6, 10, 23], "new_x_column": 6, "new_y_column": 6, "replac": [6, 8, 13], "label": [6, 18, 21], "corrected_x_column": [6, 23], "corrected_y_column": [6, 23], "cdeform_field": [6, 8], "forward": [6, 10, 13, 23], "apply_dfield": [6, 16, 20], "ad": [6, 7, 10, 12, 13, 16, 18, 20, 21], "gather_correction_metadata": 6, "meta": [6, 13, 14, 16, 17], "append_k_axi": 6, "append": [6, 8, 14, 16], "kx": [6, 8, 16, 17, 19, 20, 23], "ky": [6, 8, 16, 17, 19, 20, 23], "whichev": 6, "destin": [6, 8, 10, 13], "kx_column": [6, 23], "ky_column": [6, 23], "gather_calibration_metadata": 6, "taken": [6, 16, 21], "cm2palett": 6, "cmap_nam": 6, "certain": 6, "cm": 6, "palett": 6, "color": [6, 18], "hex": 6, "represent": [6, 14], "dictmerg": 6, "main_dict": 6, "other_entri": 6, "other": [6, 8, 10, 13, 16, 18, 23], "composit": 6, "dictionar": 6, "detector_coordinates_2_k_coordin": 6, "r_det": 6, "c_det": 6, "r_start": 6, "c_start": 6, "r_center": 6, "c_center": 6, "r_convers": 6, "c_convers": 6, "r_step": 6, "c_step": 6, "convers": [6, 13, 18, 24], "kr": 6, "kc": 6, "factor": [6, 21, 23], "detector_rang": [6, 23], "applic": [6, 8, 10, 23], "displac": 6, "matrix": 6, "generate_inverse_dfield": 6, "griddata": 6, "whole": [6, 8, 18], "load_dfield": 6, "energycalibr": [6, 8], "bias": [6, 8, 16, 19], "trace": [6, 8, 16, 23], "tof": [6, 8, 16, 18, 23], "electron": [6, 8, 13, 17], "bind": [6, 8, 16], "For": [6, 8, 10, 13, 16, 18, 19, 20, 23], "instanc": [6, 8, 9, 11, 13, 19, 23, 26], "bin_data": 6, "bia": [6, 8, 16, 18, 23], "voltag": [6, 8, 16, 19, 23], "ntrace": 6, "nrang": 6, "multipl": [6, 10, 11, 15, 17, 18], "dup": 6, "duplic": [6, 14], "per": [6, 8, 13, 18, 21, 23], "Not": [6, 9, 16, 17, 18, 19, 20, 21, 23], "overwritten": [6, 23], "data_fil": [6, 8, 16, 19], "bias_kei": [6, 8, 23], "tof_column": [6, 8, 13, 23], "hdf5": [6, 8, 12, 13, 23], "smooth": [6, 8, 23], "span": [6, 8], "7": [6, 15, 16, 17, 18, 19, 20, 21, 23], "spectra": [6, 18], "signal": [6, 8, 18], "loess": [6, 8], "savgol_filt": [6, 8], "adjust_rang": 6, "ref_id": [6, 8, 16, 18, 19], "peak_window": [6, 8, 23], "tool": [6, 8, 13, 16, 18, 20, 23], "equival": [6, 16, 18, 20], "among": 6, "within": [6, 8, 13, 16, 19, 21], "algorithm": [6, 8, 16, 20, 23], "dispers": 6, "curv": [6, 8, 16, 18, 23], "traces_norm": 6, "area": 6, "align": [6, 8, 16, 17, 19, 21, 26], "find_correspond": 6, "add_rang": 6, "infer_oth": [6, 8, 16, 19], "infer": [6, 12, 16], "warp": [6, 8, 16], "featrang": 6, "lmfit": [6, 8, 16, 18, 19, 23], "energy_scal": [6, 8, 16, 18, 19, 23], "kinet": [6, 8, 16, 18, 19, 23], "map": [6, 10, 13], "flight": [6, 8, 13, 16, 23, 26], "optim": 6, "form": [6, 8, 10, 16], "lstsq": [6, 8, 16], "lsqr": [6, 8, 16], "polynomi": [6, 8, 16], "increas": [6, 8, 16], "decreas": [6, 8, 16], "print": [6, 8, 9, 13, 16, 18], "poly_energy_calibr": 6, "fit_energy_calibr": 6, "invalid": 6, "seg": 6, "show_legend": 6, "linekwd": 6, "linesegkwd": 6, "legkwd": [6, 8, 11], "segment": 6, "highlight": 6, "legend": [6, 8, 11, 21], "xaxi": 6, "titl": 6, "legend_loc": 6, "shift": [6, 8, 18], "append_energy_axi": [6, 8, 16, 17, 18, 19], "energy_column": [6, 23], "overrid": [6, 8, 18], "calib_typ": 6, "append_tof_ns_axi": [6, 8, 18], "tof_ns_column": [6, 8, 23], "nanosecond": [6, 8, 23], "binwidth": 6, "tof_binwidth": [6, 23], "tof_bin": [6, 23], "adjust_energy_correct": [6, 8, 16], "correction_typ": [6, 8, 23], "top": 6, "graph": [6, 15, 16, 18, 20, 23], "cube": 6, "spheric": [6, 8, 16], "lorentzian": [6, 8, 16, 23], "gaussian": [6, 8, 16, 23], "lorentzian_asymmetr": [6, 8, 16], "term": [6, 21], "tog": 6, "x_width": [6, 23], "integr": [6, 23], "y_width": [6, 23], "tof_fermi": [6, 16, 23], "fermi": [6, 16], "level": [6, 9, 13], "tof_width": [6, 23], "color_clip": [6, 23], "drift": 6, "gamma": [6, 16, 19, 20, 23], "linewidth": [6, 18], "lorentz": 6, "profil": [6, 26], "sigma": [6, 16, 23], "standard": [6, 12, 16, 17], "deviat": [6, 16], "gamma2": [6, 16], "asymmetr": 6, "amplitude2": [6, 16], "apply_energy_correct": [6, 8, 16, 17, 19], "new_tof_column": 6, "corrected_tof_column": [6, 23], "align_dld_sector": [6, 8, 18], "sector_id_column": [6, 13, 23], "sector_delai": [6, 8, 23], "section": [6, 23], "sector": [6, 8, 23, 26], "add_offset": 6, "offset": [6, 10, 23, 26], "constant": [6, 8, 18], "weight": [6, 8, 10, 18], "preserve_mean": [6, 8, 10, 18], "reduct": [6, 8, 10, 18], "dfop": [6, 10], "apply_offset_from_column": 6, "flip": [6, 8, 23], "sign": [6, 8, 10, 23], "subtract": [6, 8, 10], "seri": [6, 8, 13, 18], "support": [6, 7, 8, 10, 13], "extract_bia": 6, "filenam": [6, 8, 9, 13, 23], "correction_funct": 6, "model": 6, "One": [6, 16], "distribut": [6, 10, 21, 25], "diamet": [6, 16, 23], "normspec": 6, "spec": [6, 13], "assembl": 6, "maximum": [6, 8, 16, 18], "sig_stil": 6, "sig_mov": 6, "fastdtw": [6, 23], "range_convert": 6, "xrng": 6, "pathcorr": 6, "pairwis": 6, "obtain": [6, 13, 18, 23], "boundari": 6, "id_1_trace_1": 6, "id_1_trace_2": 6, "id_2_trace_1": 6, "id_2_trace_2": 6, "accord": [6, 16], "find_nearest": 6, "narrai": 6, "closest": 6, "interest": [6, 13, 16, 18], "peaksearch": 6, "pkwindow": 6, "region": 6, "lowerbound1": 6, "upperbound1": 6, "lowerbound2": 6, "upperbound2": 6, "window": [6, 7, 23, 25], "amount": [6, 8, 18, 21], "lookahead": 6, "peakdetect1d": 6, "custom": 6, "y_axi": 6, "x_axi": 6, "200": [6, 16, 17, 21, 23], "delta": 6, "maxima": [6, 16, 18], "minima": 6, "discov": 6, "surround": 6, "larger": [6, 16], "respect": [6, 13, 16, 18, 19, 20, 23], "matlab": 6, "script": [6, 25], "billauer": 6, "co": 6, "il": 6, "peakdet": 6, "whose": 6, "ahead": 6, "candid": 6, "actual": 6, "period": 6, "f": [6, 18, 19, 23], "25": [6, 16, 17, 18, 23], "good": [6, 8], "minimum": [6, 8], "mai": [6, 18], "consid": [6, 12, 18], "hinder": 6, "pick": [6, 18], "toward": [6, 16], "rmsnois": 6, "neg": 6, "po": 6, "ref_energi": [6, 8, 16, 18, 19], "nonlinear": [6, 16], "least": [6, 13, 15, 16, 17, 18, 19, 20, 21], "squar": [6, 16, 18], "spectral": 6, "edc": [6, 16, 19], "done": [6, 16, 18, 25], "t0": [6, 8, 16, 18, 23], "associ": [6, 13], "ev": [6, 18, 23], "output": [6, 11, 12, 13, 17, 18], "constrain": [6, 18], "1e": [6, 16, 18], "e0": [6, 16, 18, 23], "min": [6, 16, 18], "aug": 6, "solv": [6, 21], "vector": [6, 17, 20], "equat": 6, "differenti": 6, "relationship": [6, 16, 18], "written": 6, "sum_n": 6, "a_n": 6, "augment": [6, 13], "doubl": 6, "etc": [6, 7, 13, 23, 25], "tmat": 6, "ta": 6, "bvec": 6, "tof2ev": 6, "tof_dist": 6, "time_offset": 6, "energy_offset": 6, "express": [6, 13], "volt": 6, "formula": 6, "meter": 6, "tof2evpoli": 6, "poly_a": 6, "approxim": [6, 8, 16, 23], "tof2n": 6, "map_partit": 6, "second": [6, 8, 13, 23], "delaycalibr": [6, 8], "pump": [6, 17, 18, 23], "probe": [6, 17, 18, 23], "append_delay_axi": [6, 8], "adc_column": [6, 23], "delay_column": [6, 23], "adc_rang": [6, 16, 23], "delay_rang": [6, 8, 16, 17], "time0": [6, 23], "delay_range_mm": 6, "datafil": [6, 8, 16], "p1_kei": [6, 23], "p2_kei": [6, 23], "t0_kei": [6, 23], "analog": [6, 23], "digit": [6, 18, 21, 23], "adc": [6, 16, 17, 19, 20, 21, 23], "scan": [6, 8, 13, 16, 17, 19], "p": [6, 17, 18, 23], "overlap": [6, 18, 23], "stage": [6, 18, 23], "mm": 6, "flip_delay_axi": [6, 8, 18], "extract_delay_stage_paramet": 6, "p1_valu": 6, "p2_valu": 6, "t0_valu": 6, "mm_to_p": 6, "delay_mm": 6, "time0_mm": 6, "picosecond": [6, 8], "librari": [7, 8, 26], "yaml": [7, 8, 16, 17, 18, 19, 20, 21, 23], "json": [7, 13, 17, 23], "parse_config": 7, "folder_config": [7, 23], "user_config": [7, 19, 20, 23], "system_config": [7, 18, 23], "default_config": [7, 23], "home": [7, 9, 16, 17, 18, 19, 20, 21, 23], "runner": [7, 9, 16, 17, 18, 19, 20, 21], "complet": [7, 9, 12, 13, 18], "hierarch": [7, 23], "item": 7, "These": [7, 9, 16, 17, 21, 23], "place": [7, 23], "folder": [7, 8, 9, 13, 16, 17, 18, 19, 20, 21, 23], "prefer": 7, "sed_config": [7, 8, 16, 17, 18, 19, 20, 21, 23], "wide": 7, "linux": [7, 23, 25], "allusersprofil": [7, 23], "package_dir": 7, "neither": [7, 13], "nor": [7, 13], "filenotfounderror": [7, 13], "load_config": 7, "config_path": 7, "cannot": [7, 13], "save_config": 7, "config_dict": 7, "overwrit": [7, 8, 13, 14, 18, 23], "save": [7, 8, 12, 13, 16, 17, 23, 26], "fulli": [7, 9], "complete_dictionari": 7, "base_dictionari": 7, "iter": [7, 10, 13, 23], "sedprocessor": [8, 16, 17, 18, 19, 20, 21], "collect_metadata": [8, 13, 17, 18], "wrapper": 8, "flow": 8, "extern": [8, 13, 22, 24], "ddf": [8, 13, 15], "identifi": [8, 13, 16], "reader": [8, 12, 13, 17, 23], "accessor": 8, "underli": 8, "timed_datafram": 8, "metahandl": [8, 13, 14], "add_attribut": 8, "under": [8, 14], "getter": 8, "normalization_histogram": 8, "cpy": 8, "mirror": [8, 13, 23], "network": [8, 13, 16, 19], "drive": [8, 13, 16, 19], "storag": [8, 16, 17, 18, 19, 20, 21, 23], "use_copy_tool": [8, 23], "tabular": 8, "accept": 8, "anyth": [8, 18], "interpret": 8, "filter_column": 8, "min_valu": 8, "inf": [8, 10], "max_valu": 8, "filter": [8, 10, 20], "bin_and_load_momentum_calibr": [8, 16, 17, 19, 20], "df_partit": [8, 16, 17, 19, 20, 21], "1st": 8, "momentum": [8, 13, 17, 19], "corrector": 8, "pre_bin": 8, "define_featur": [8, 16, 19, 20], "rotation_symmetri": [8, 16, 19, 20, 23], "auto_detect": [8, 16], "gui": [8, 16, 20], "generate_splinewarp": [8, 16, 19, 20], "restor": 8, "splinewarp": [8, 16], "save_splinewarp": [8, 16], "use_correct": [8, 17], "affin": [8, 16], "save_transform": 8, "pose": [8, 17, 19], "apply_momentum_correct": [8, 16, 17, 19, 20], "preview": [8, 16, 17], "inv_dfield": 8, "calibrate_momentum_ax": [8, 16, 20], "high": [8, 16, 23], "its": [8, 13, 16], "bz": [8, 16, 23], "save_momentum_calibr": [8, 16], "apply_momentum_calibr": [8, 16, 17, 19, 20], "arg": 8, "energi": [8, 12, 15, 17, 19, 23, 26], "yet": [8, 23], "save_energy_correct": [8, 16], "load_bias_seri": [8, 16, 18, 19], "binned_data": [8, 18], "bias_column": [8, 23], "normalize_span": [8, 23], "normalize_ord": [8, 23], "find_bias_peak": [8, 16, 18, 19], "radiu": [8, 23], "indic": 8, "tri": [8, 12], "same": [8, 10, 14, 16, 17, 18, 23], "fast_dtw": 8, "too": [8, 16, 18, 21], "qualit": 8, "ideal": [8, 17, 21], "middl": [8, 16], "narrow": [8, 16], "fastdtw_radiu": [8, 23], "monoton": 8, "calibrate_energy_axi": [8, 16, 18, 19], "3rd": 8, "calibration_method": [8, 23], "save_energy_calibr": [8, 16, 18], "add_energy_offset": [8, 18], "save_energy_offset": [8, 18], "channel": [8, 12, 13, 16, 23], "tof_step_to_n": 8, "endstat": 8, "delai": [8, 13, 17, 23, 26], "calibrate_delay_axi": [8, 16, 17], "save_delay_calibr": 8, "add_delay_offset": [8, 18], "revers": 8, "save_delay_offset": [8, 18], "save_workflow_param": [8, 18], "add_jitt": [8, 16, 17, 18, 19, 20, 21], "amp": [8, 10, 21], "onto": 8, "jitter_col": [8, 23], "interv": [8, 10, 13], "jitter_amp": [8, 23], "apply_jitt": [8, 10, 18], "add_time_stamped_data": [8, 10, 19], "dest_column": [8, 10, 19], "time_stamp": [8, 10, 13, 19, 20], "archiver_channel": [8, 13, 19], "timestamp": [8, 10, 13, 18, 19, 20, 23], "pair": [8, 10, 12, 19], "stamp": [8, 10, 13, 17, 20, 22, 23, 24], "fetch": [8, 9, 13], "epic": [8, 13, 17, 19, 23], "archiv": [8, 13, 17, 19, 23], "retriev": [8, 13, 19, 23], "normalize_to_acquisition_tim": [8, 16, 18, 19], "NOT": [8, 18], "acquisit": [8, 13, 18], "num_cor": [8, 23], "openmp": 8, "threadpool_limit": 8, "lower_bound": [8, 10, 20], "upper_bound": [8, 10, 20], "remain": [8, 13, 19], "unmodifi": 8, "asserterror": 8, "rise": 8, "get_normalization_histogram": 8, "use_time_stamp": 8, "instead": [8, 12], "rather": 8, "than": [8, 12, 21], "time_stamp_alia": [8, 13, 23], "unit": [8, 18, 23], "view_event_histogram": [8, 16, 18, 19], "dfpid": [8, 16, 18, 19], "ncol": [8, 11], "histkwd": [8, 11], "individu": [8, 13, 23], "substitu": 8, "grid_histogram": [8, 11], "faddr": [8, 12], "extens": [8, 13], "tiff": [8, 12, 18], "tif": 8, "h5": [8, 13, 16, 18, 19, 23], "nx": [8, 17], "writer": 8, "alias_dict": [8, 12, 13], "alias": [8, 13, 23], "w": [8, 12], "pynxtool": [8, 12, 17, 23], "input_fil": [8, 12, 23], "eln_data": 8, "lab": [8, 17, 25], "come": [9, 17, 18], "abil": 9, "url": [9, 13, 23], "By": [9, 10], "wse2": [9, 16, 17, 20, 21], "tas2": [9, 19], "gd_w110": [9, 18], "extend": 9, "import": [9, 15, 16, 17, 19, 20, 21, 26], "o": [9, 18, 19], "just": [9, 18], "anoth": 9, "root_dir": 9, "interrupt": 9, "restart": 9, "continu": [9, 19, 21], "remove_zip": 9, "user_path": 9, "152m": 9, "73g": 9, "00": [9, 17, 18], "02": 9, "01": [9, 17, 23], "24": [9, 15, 16, 18], "71": [9, 16], "3mb": 9, "09": [9, 16, 18], "54": [9, 18, 23], "delet": [9, 10, 13, 18], "zip": [9, 15], "use_exist": [9, 16, 17, 18, 19, 20, 21], "new_dataset": 9, "Or": 9, "re": [9, 13, 15, 16, 17, 18, 19, 20, 21], "some": [9, 13, 18, 21], "rerun": 9, "command": 9, "73gb": 9, "12": [9, 16, 17, 18, 19, 21, 23], "6mb": 9, "113": [9, 23], "41": [9, 18], "43": [9, 16, 18], "successfulli": [9, 18], "existing_data_path": 9, "dir": [9, 16, 17, 18, 19, 20, 21], "subdir": [9, 16, 17, 19, 20, 21], "scan049_1": 9, "energycal_2019_01_08": 9, "rearrange_fil": 9, "subfold": 9, "put": [9, 16, 17, 18, 19, 20, 21], "example_dset_nam": 9, "example_dset_info": 9, "real": 9, "example_subdir": 9, "data_nam": 9, "info": [9, 16, 17, 18, 19, 20, 21], "assert": [9, 18], "likewis": 9, "doesn": 9, "now": [9, 13, 16, 18, 21, 25], "let": [9, 18, 21], "28": [9, 15, 16, 18, 20, 23], "10file": 9, "rearrang": 9, "696": [9, 16, 18], "11file": 9, "movement": 9, "path_to_remov": 9, "zenodo": [9, 18, 19, 24], "record": [9, 19], "6369728": 9, "10658470": 9, "single_event_data": 9, "analysis_data": 9, "calibration_data": 9, "10160182": 9, "scan0121_1": [9, 19], "energycal_2020_07_20": 9, "web": 9, "manag": 9, "json_path": 9, "load_datasets_dict": 9, "kwarg": 9, "ignore_zip": 9, "ignor": [9, 12, 13], "cols_jitt": 10, "jitter_typ": [10, 21], "stdev": 10, "drop_column": 10, "column_nam": 10, "drop": [10, 13], "apply_filt": 10, "bound": 10, "consecut": 10, "time_stamp_column": 10, "map_columns_2d": 10, "map_2d": 10, "simultan": 10, "callabl": 10, "forward_fill_lazi": 10, "max": [10, 16, 17, 18], "compute_length": 10, "spars": 10, "those": [10, 16, 18, 25], "mani": [10, 18], "nan": [10, 13, 18], "entir": [10, 13, 21, 26], "consist": [10, 23], "twice": 10, "enough": [10, 21], "previou": [10, 14, 16, 26], "smallest": 10, "length": [10, 18, 20, 23], "backward_fill_lazi": 10, "backward": 10, "help": [10, 18, 21, 25], "often": 10, "care": 10, "assumpt": 10, "being": [10, 18], "past": 10, "offset_by_other_column": 10, "target_column": 10, "offset_column": 10, "inplac": 10, "renam": 10, "suffix": 10, "_offset": 10, "plot_single_hist": 11, "histval": 11, "tooltip": 11, "text": 11, "quad": 11, "pbk": 11, "dct": 11, "rv": 11, "rvbin": 11, "rvrang": 11, "random": [11, 15, 21], "load_h5": 12, "to_h5": 12, "subfunct": 12, "load_tiff": 12, "dim": [12, 15], "attr": [12, 18], "retain": 12, "tzcyx": 12, "to_tiff": 12, "compat": 12, "imagej": 12, "axis_dict": 12, "therefor": [12, 18], "best": [12, 16, 19], "posi": [12, 15], "posx": [12, 15], "c": [12, 16, 18, 23], "full": [12, 13, 16], "z": 12, "sort": [12, 13], "guess": 12, "to_nexu": 12, "_attr": 12, "dataconvert": [12, 17], "loader_interfac": 13, "get_load": 13, "loader_nam": 13, "helper": 13, "get_names_of_all_load": 13, "popul": 13, "abc": 13, "py": 13, "becom": 13, "meta_handl": 13, "supported_file_typ": 13, "read_datafram": 13, "ftype": 13, "preced": 13, "parquet": [13, 23], "csv": 13, "get_files_from_run_id": 13, "run_id": 13, "get_count_r": [13, 16, 19], "fid": 13, "rate": [13, 16, 19], "countrat": 13, "get_elapsed_tim": [13, 16], "elaps": [13, 16, 18], "alia": 13, "author": 13, "l": 13, "rettig": 13, "variou": [13, 23], "parser": 13, "hdf5_to_datafram": 13, "group_nam": [13, 23], "ms_markers_group": [13, 23], "msmarker": [13, 23], "first_event_time_stamp_kei": [13, 23], "firsteventtimestamp": [13, 23], "stream": [13, 23], "groupnam": 13, "hdf5_to_timed_datafram": 13, "evenli": 13, "get_groups_and_alias": 13, "h5file": 13, "search_pattern": 13, "alias_kei": 13, "h5py": [13, 19], "pattern": 13, "pars": [13, 23], "hdf5_to_arrai": 13, "data_typ": 13, "float32": [13, 18], "hdf5_to_timed_arrai": 13, "ms_marker": 13, "get_attribut": 13, "h5group": 13, "decod": 13, "millisecond": [13, 23], "marker": 13, "hz": 13, "wave": 13, "get_archiver_data": 13, "archiver_url": [13, 23], "ts_from": 13, "ts_to": 13, "meti": 13, "1000": [13, 23], "fhi": [13, 17, 19], "berlin": [13, 17], "hdf5_groupnam": [13, 23], "hdf5_alias": [13, 23], "base_fold": 13, "get_start_and_end_tim": 13, "gather_metadata": 13, "wesp": 13, "structur": [13, 15, 16, 18, 20, 23], "buffer": 13, "amalgam": 13, "across": 13, "reread": 13, "back": 13, "multiindex": 13, "panda": 13, "dataformat": 13, "macro": 13, "microbunch": [13, 18], "alongsid": 13, "inherit": 13, "initialize_path": 13, "daq": [13, 23], "available_channel": 13, "exclud": 13, "pulseid": [13, 18, 23], "get_channel": 13, "desir": 13, "per_puls": [13, 23], "per_electron": [13, 23], "per_train": [13, 23], "multi_index": 13, "reset_multi_index": 13, "puls": [13, 23], "create_multi_index_per_electron": 13, "h5_file": 13, "reli": 13, "macrobunch": 13, "trainid": [13, 18], "electronid": [13, 18], "create_multi_index_per_puls": 13, "train_id": 13, "np_arrai": 13, "train": [13, 18], "create_numpy_array_per_channel": 13, "create_dataframe_per_electron": 13, "explod": 13, "meaningless": 13, "create_dataframe_per_puls": 13, "channel_dict": 13, "auxiliari": [13, 23], "repeat": 13, "499": 13, "compar": [13, 18, 23], "multicolumn": 13, "create_dataframe_per_train": 13, "create_dataframe_per_channel": 13, "concatenate_channel": 13, "concaten": 13, "create_dataframe_per_fil": 13, "file_path": 13, "opposit": 13, "create_buffer_fil": 13, "h5_path": 13, "parquet_path": 13, "except": [13, 14], "buffer_file_handl": 13, "data_parquet_dir": [13, 18, 23], "force_recr": [13, 18], "forc": 13, "recreat": 13, "three": 13, "schema": 13, "fail": 13, "parquet_handl": 13, "load_parquet": 13, "save_parquet": 13, "distinguish": 13, "multidetector": 13, "dd": 13, "dataframe_electron": 13, "dataframe_puls": 13, "parse_metadata": 13, "scicat_token": [13, 18, 23], "metadataretriev": 13, "scicat": [13, 23], "data_raw_dir": [13, 18, 23], "beamtim": [13, 18, 23], "metadata_config": 13, "get_metadata": 13, "beamtime_id": [13, 23], "sxp": 13, "microscop": 13, "ident": 13, "dummi": 13, "gather_fil": 13, "f_start": 13, "f_end": 13, "f_step": 13, "file_sort": 13, "glob": [13, 19], "parse_h5_kei": 13, "_hl": 13, "param": 13, "while": [13, 18], "split_channel_bitwis": 13, "input_column": 13, "output_column": 13, "bit_mask": 13, "split": 13, "bitwis": 13, "bit": [13, 23], "mask": 13, "split_dld_time_from_sector_id": 13, "sector_id_reserved_bit": [13, 23], "sectorid": 13, "encod": [13, 23], "dldsectorid": [13, 18, 23], "dldtimestep": [13, 18, 23], "reserv": [13, 23], "mirrorutil": [13, 16, 19], "transpar": [13, 16, 19], "tree": 13, "speed": [13, 18], "tremend": 13, "copytool": 13, "dest": 13, "force_copi": 13, "compute_kwd": 13, "oserror": 13, "disk": 13, "sdir": 13, "cleanup_oldest_scan": 13, "old": 13, "oldest": 13, "ctime": 13, "queri": 13, "ag": 13, "get_target_dir": 13, "gid": [13, 23], "root": [13, 18, 23], "unix": 13, "wether": 13, "notadirectoryerror": 13, "insid": [13, 16], "mymakedir": 13, "mycopi": 13, "fir": 13, "ownership": 13, "handler": 14, "manipul": [14, 21], "nice": 14, "rtype": 14, "duplicate_polici": 14, "control": 14, "duplicateentryerror": 14, "recurs": 14, "trail": 14, "attempt": 14, "explan": 14, "tabl": 15, "simul": 15, "showcas": [15, 20], "dak": 15, "realli": 15, "simpli": [15, 18], "plt": [15, 16, 18, 19, 20, 21], "widget": [15, 16, 17, 18, 19, 20, 21], "n_pt": 15, "100000": [15, 23], "randn": 15, "len": [15, 17, 23], "253613": 15, "631844": 15, "230590": 15, "531664": 15, "298844": 15, "560328": 15, "770969": 15, "698075": 15, "429917": 15, "334482": 15, "094977": 15, "066262": 15, "261851": 15, "606995": 15, "486180": 15, "99995": 15, "074876": 15, "692410": 15, "448132": 15, "99996": 15, "208107": 15, "572078": 15, "535915": 15, "99997": 15, "065059": 15, "553671": 15, "908622": 15, "99998": 15, "130602": 15, "415680": 15, "857895": 15, "99999": 15, "398135": 15, "813826": 15, "008245": 15, "binax": 15, "nbin": 15, "120": 15, "binrang": 15, "linspac": 15, "sy": 15, "39": [15, 16, 17, 18, 19, 20, 21], "wall": 15, "47": [15, 17, 18], "fig": [15, 16, 18, 19], "subplot": [15, 16, 18, 19], "constrained_layout": [15, 16, 19], "from_panda": 15, "npartit": [15, 16, 18, 20], "float64": [15, 16, 18, 20], "2000": 15, "98000": 15, "layer": [15, 16, 18, 20], "purpos": [15, 16], "418": 15, "517": 15, "934": 15, "505": 15, "Then": 16, "final": [16, 23], "reason": [16, 19], "attach": [16, 19], "achiev": [16, 19], "load_ext": [16, 17, 19, 20, 21], "autoreload": [16, 17, 19, 20, 21], "gbyte": [16, 17, 18, 19, 20, 21], "data_path": [16, 17, 18, 19, 20, 21], "scandir": [16, 17, 19, 20, 21], "caldir": [16, 19], "34": [16, 17, 18, 19, 20, 21], "want": [16, 17, 18, 19, 20, 21], "sp": [16, 17, 18, 19, 20, 21], "mpes_example_config": [16, 17, 19, 20, 21], "sec": [16, 19], "lt": [16, 17, 18, 19, 20, 21], "line2d": [16, 19, 21], "0x7fb31ef44280": 16, "gt": [16, 17, 18, 19, 20, 21], "2588": 16, "4949999999994": 16, "inspect": [16, 19, 26], "1800": [16, 23], "130000": 16, "140000": 16, "9000": 16, "170": 16, "33": [16, 17, 18, 19], "materi": 16, "plu": 16, "isol": 16, "cell": [16, 18], "perfect": 16, "fold": [16, 20], "203": [16, 20, 23], "341": [16, 23], "96": [16, 23], "299": [16, 23], "16": [16, 17, 18, 19, 21, 23], "345": [16, 23], "32": [16, 18, 23], "350": [16, 23], "243": [16, 23], "70": [16, 23], "304": [16, 18, 23], "38": [16, 18, 23], "149": [16, 23], "88": [16, 23], "199": [16, 23], "52": [16, 23], "152": [16, 23], "48": [16, 18, 23], "154": [16, 23], "242": [16, 19, 23], "27": [16, 18, 23], "248": [16, 23], "29": [16, 18, 23], "62": [16, 18, 23], "autodetect": 16, "daostarfind": 16, "fwhm": [16, 23], "half": [16, 21, 23], "sigma_radiu": [16, 23], "central": 16, "shall": [16, 23], "fo": 16, "pouter": [16, 20], "153": 16, "40641768": 16, "05409506": 16, "53209389": 16, "78518227": 16, "00293502": 16, "342": 16, "98626161": 16, "87697973": 16, "346": 16, "19816858": 16, "305": 16, "65130088": 16, "19208642": 16, "95421336": 16, "244": 16, "78165448": 16, "249": 16, "23015771403016": 16, "2358054013485": 16, "later": [16, 18], "reus": 16, "orient": 16, "further": [16, 23], "potenti": 16, "via": 16, "14": [16, 17, 18, 19, 21], "18": [16, 18, 19], "13": [16, 17, 18, 19, 21], "moment": [16, 17, 19, 20], "xm": [16, 17, 20, 23], "ym": [16, 17, 20, 23], "206": [16, 20], "2nd": 16, "mark": 16, "distinct": 16, "mous": 16, "brillouin_zone_cent": 16, "toggl": 16, "sqrt": [16, 20], "pi": [16, 20], "hexagon": [16, 20], "308": 16, "247": [16, 20], "15": [16, 17, 18, 19, 21, 23], "assign": [16, 18, 20, 23], "216": [16, 20], "effect": [16, 18, 19], "tube": 16, "charg": 16, "ontop": [16, 21], "17": [16, 17, 18, 19, 21], "730": [16, 23], "920": [16, 23], "66200": 16, "19": [16, 18, 19], "2024": 16, "tm": [16, 17, 23], "230": [16, 17], "measur": [16, 18], "energycalfold": 16, "arang": [16, 19], "23": [16, 17, 18], "num": [16, 19], "zfill": [16, 19], "_": [16, 17, 20, 21], "64000": [16, 19], "75000": 16, "dynam": [16, 17], "21": [16, 17, 18, 19], "common": [16, 18], "rg": [16, 19], "129031": 16, "03103103103": 16, "129621": 16, "62162162163": 16, "129541": 16, "54154154155": 16, "130142": 16, "14214214214": 16, "130062": 16, "06206206206": 16, "130662": 16, "66266266267": 16, "130612": 16, "61261261262": 16, "131213": 16, "21321321322": 16, "131203": 16, "20320320321": 16, "131803": 16, "8038038038": 16, "131793": 16, "7937937938": 16, "132384": 16, "38438438438": 16, "132434": 16, "43443443443": 16, "133045": 16, "04504504506": 16, "133105": 16, "10510510512": 16, "133715": 16, "71571571572": 16, "133805": 16, "8058058058": 16, "134436": 16, "43643643643": 16, "134546": 16, "54654654654": 16, "135197": 16, "1971971972": 16, "refid": 16, "somewher": 16, "66100": [16, 20], "67000": [16, 21], "togeth": 16, "22": [16, 18, 19], "eref": 16, "ef": 16, "vari": [16, 18, 19], "8e": 16, "statist": [16, 18], "leastsq": [16, 18], "eval": [16, 18], "chi": [16, 18], "00218781": 16, "reduc": [16, 18], "7348e": 16, "04": [16, 18], "akaik": [16, 18], "crit": [16, 18], "87": 16, "7502612": 16, "bayesian": [16, 18], "86": 16, "5565754": 16, "09544523": 16, "03646409": 16, "init": [16, 18], "6073e": 16, "07": [16, 18, 23], "5361e": 16, "99": 16, "46": [16, 18], "6158341": 16, "79487877": 16, "correl": [16, 18], "unreport": [16, 18], "9997": 16, "9988": 16, "9974": 16, "qualiti": [16, 18], "240": 16, "pathlib": [16, 18], "500": [16, 17, 18, 23], "1500": [16, 17, 23], "475": 16, "6400": 16, "419780": 16, "000000": 16, "365": [16, 21], "132974": 16, "1002": [16, 21], "70101": [16, 21], "6317": [16, 17, 21], "355": [16, 20], "635553": 16, "760": 16, "980181": 16, "817": 16, "75614": [16, 17], "6315": [16, 17], "791": 16, "403966": 16, "692": [16, 17, 21], "008937": 16, "971": [16, 17, 21], "66455": [16, 17, 21], "713": 16, "581490": 16, "670": 16, "509276": 16, "711": 16, "73025": [16, 17, 21], "6316": [16, 17, 21], "440885": 16, "443209": 16, "1164": 16, "68459": 16, "282": 16, "674738": 16, "571": [16, 17], "244383": 16, "665": [16, 17], "73903": [16, 17], "590": 16, "229160": 16, "822": 16, "347397": 16, "545": 16, "72632": 16, "6318": 16, "848": 16, "440562": 16, "676401": 16, "415": 16, "72421": 16, "838": [16, 17], "160985": 16, "1006": 16, "403673": 16, "667": 16, "72802": 16, "1040": 16, "506587": 16, "060071": 16, "655155": 16, "209680": 16, "660": [16, 17], "479251": 16, "1032": 16, "309504": 16, "106120": 16, "708980": 16, "70084": 16, "123540": 16, "300935": 16, "1472": [16, 17], "028008": 16, "839": 16, "583108": 16, "062778": 16, "192013": 16, "100108": 16, "702865": 16, "1471": [16, 17], "638880": 16, "985": 16, "021519": 16, "145971": 16, "582135": 16, "66449": [16, 17], "325197": 16, "818924": 16, "986139": 16, "740": 16, "912026": 16, "191949": 16, "072660": 16, "114465": 16, "802109": 16, "817477": 16, "1185": 16, "615599": 16, "301829": 16, "120205": 16, "68432": [16, 17], "929629": 16, "958823": 16, "795176": 16, "701": 16, "449707": 16, "476850": 16, "178513": 16, "73900": [16, 17], "341052": 16, "873814": 16, "728062": 16, "587": 16, "182592": 16, "215772": 16, "485022": 16, "72628": 16, "200254": 16, "280762": 16, "437940": 16, "466": 16, "193425": 16, "188199": 16, "809561": 16, "72412": [16, 17], "010205": 16, "986818": 16, "873891": 16, "709": 16, "560762": 16, "730967": 16, "156756": 16, "72794": [16, 17], "907078": 16, "502566": 16, "119383": 16, "With": [16, 18], "26": [16, 18], "600": [16, 17, 18, 23], "1600": [16, 17], "loc": [16, 19], "quadmesh": [16, 18, 19, 20], "0x7fb3597f0bb0": 16, "_normalization_histogram": [16, 19], "90000": 16, "_bin": [16, 19], "nxmpe": [17, 23], "fairmat": 17, "experiment": 17, "propos": 17, "9636feecb79bb32b828b1a9804269573256d7696": 17, "contributed_definit": 17, "nfdi": 17, "experiment_summari": 17, "xuv": 17, "nir": 17, "entry_titl": 17, "valenc": 17, "band": [17, 19], "800": [17, 18], "nm": 17, "linear": 17, "polar": 17, "mj": 17, "cm2": 17, "absorb": 17, "fluenc": 17, "experiment_titl": 17, "2h": 17, "nxuser": 17, "todo": [17, 18], "discuss": [17, 21], "deal": 17, "user0": 17, "julian": 17, "maklar": 17, "role": 17, "investig": 17, "affili": 17, "fritz": 17, "haber": 17, "institut": 17, "planck": 17, "societi": 17, "address": 17, "faradayweg": 17, "14195": 17, "email": 17, "mpg": [17, 23], "de": [17, 23], "nxinstrument": 17, "energy_resolut": 17, "140": 17, "analyz": [17, 18], "slow_ax": 17, "spatial_resolut": 17, "110": 17, "momentum_resolut": 17, "08": [17, 18], "working_dist": 17, "lens_mod": 17, "6kv_kmodem4": [17, 23], "0_30vtof": 17, "sav": [17, 23], "beam": [17, 23], "incident_energi": 17, "incident_energy_spread": 17, "pulse_dur": 17, "frequenc": 17, "incident_polar": 17, "pol": 17, "stoke": 17, "80": [17, 19, 23], "55": [17, 18], "35": [17, 18, 23], "incident_wavelength": 17, "average_pow": 17, "300": [17, 19, 23], "pulse_energi": 17, "\u00b5j": 17, "265": 17, "preparation_d": 17, "2019": 17, "13t10": 17, "preparation_descript": 17, "cleav": 17, "sample_histori": 17, "chemical_formula": 17, "crystal": 17, "carv": [17, 19, 23], "temp_rbv": [17, 23], "xgs600": [17, 23], "pressureac": [17, 23], "p_rd": [17, 23], "ktof": [17, 23], "extr": [17, 23], "12877": 17, "udld": [17, 23], "399": 17, "99905": 17, "19976": 17, "apertur": [17, 23], "m1": [17, 23], "rbv": [17, 23], "729931": 17, "m2": [17, 23], "200078": 17, "m3": [17, 23], "000425": 17, "motor": [17, 23], "trx": [17, 23], "1900000000000004": 17, "1700200225439552": 17, "trz": [17, 23], "4501953125": 17, "tht": [17, 23], "423": [17, 18], "30500940561586": 17, "phi": [17, 23], "99931647456264949": 17, "omg": [17, 23], "002500171914066": 17, "gather": 17, "276360": 17, "399709": 17, "364": 17, "728350": 17, "1001": [17, 23], "70100": 17, "353": 17, "211878": 17, "761": [17, 21], "005222": 17, "818": [17, 21], "75615": [17, 21], "792": 17, "006815": 17, "499887": 17, "714": 17, "835028": 17, "671": [17, 21], "327108": 17, "712": [17, 21], "73026": [17, 21], "697": [17, 18], "249684": 17, "298": 17, "626548": 17, "1163": 17, "68458": 17, "280": 17, "276783": 17, "396596": 17, "588": 17, "908561": 17, "821": 17, "995646": 17, "544": 17, "72631": 17, "846": 17, "686333": 17, "112016": 17, "416": 17, "72422": 17, "836": 17, "093055": 17, "1005": 17, "823045": 17, "666": 17, "72801": 17, "1037": 17, "621179": 17, "97": 17, "201345": 17, "122838": 17, "799340": 17, "918321": 17, "060136": 17, "244267": 17, "1034": 17, "401675": 17, "112621": 17, "714592": 17, "70083": 17, "713945": 17, "287671": 17, "891426": 17, "661377": 17, "064395": 17, "189541": 17, "124552": 17, "576646": 17, "647332": 17, "984": 17, "345757": 17, "142609": 17, "580322": 17, "798326": 17, "846818": 17, "151861": 17, "741": 17, "862647": 17, "189780": 17, "070110": 17, "945080": 17, "731214": 17, "093539": 17, "1187": 17, "200863": 17, "308261": 17, "124458": 17, "113214": 17, "970642": 17, "519510": 17, "703": 17, "065096": 17, "480392": 17, "174180": 17, "499755": 17, "783526": 17, "779442": 17, "586": 17, "885348": 17, "211067": 17, "485819": 17, "72627": 17, "842464": 17, "216727": 17, "319205": 17, "467": 17, "208681": 17, "182652": 17, "806838": 17, "461714": 17, "928415": 17, "020934": 17, "707": 17, "800712": 17, "723228": 17, "161478": 17, "347563": 17, "434761": 17, "923391": 17, "nxmpes_config": [17, 23], "jupyterlab": 17, "jupyterlab_h5web": 17, "h5web": 17, "maxwel": [18, 23], "howev": 18, "public": 18, "beamtime_dir": [18, 23], "asap3": [18, 23], "gpf": [18, 23], "pg2": [18, 23], "2023": [18, 23], "11019101": [18, 23], "r_ok": 18, "hdf": 18, "offlin": 18, "fl1user3": [18, 23], "buffer_path": 18, "els": 18, "relev": 18, "config_fil": 18, "flash_example_config": 18, "config_overrid": 18, "clean": 18, "previous": 18, "preciou": 18, "local_folder_config": 18, "44762": 18, "fov": 18, "450": 18, "\u00b5m": 18, "our": [18, 23], "workhors": 18, "scicat_url": [18, 23], "84": 18, "n_job": 18, "task": 18, "avoid": 18, "artifact": [18, 21], "aris": 18, "incommensur": 18, "impos": 18, "quick": 18, "insight": 18, "without": 18, "head": [18, 21], "u": [18, 21], "what": 18, "thing": 18, "tail": 18, "dldposx": [18, 23], "dldposi": [18, 23], "cryotemperatur": [18, 23], "dldtimebins": [18, 23], "extractorcurr": [18, 23], "extractorvoltag": [18, 23], "samplebia": [18, 23], "sampletemperatur": [18, 23], "tofvoltag": [18, 23], "pulsersignadc": [18, 23], "monochromatorphotonenergi": [18, 23], "gmdbda": [18, 23], "bam": [18, 23], "int64": 18, "int8": 18, "1646339970": 18, "679395e": 18, "780": 18, "512684": 18, "689": 18, "3049": 18, "303": 18, "940002": 18, "020576": 18, "070368": 18, "6029": 18, "370117": 18, "003489": 18, "999065": 18, "8976": 18, "09375": 18, "787264": 18, "690": 18, "3048": 18, "562": 18, "345425": 18, "231": 18, "5729": 18, "8990": 18, "37500": 18, "938": 18, "092653": 18, "947": 18, "5730": 18, "535": 18, "618923": 18, "853": 18, "1570": 18, "8982": 18, "87500": 18, "impress": 18, "view_even_histogram": 18, "saw": 18, "hint": 18, "know": 18, "still": [18, 23], "480": 18, "420": [18, 23], "900": 18, "res_chessi": 18, "conveni": 18, "dtype": 18, "421": 18, "422": [18, 23], "897": 18, "898": 18, "899": 18, "long_nam": 18, "x27": 18, "dataarraydldposi": 18, "480dldposx": 18, "4800": 18, "0arrai": 18, "float64420": 18, "0unit": 18, "steparrai": 18, "dldposypandasindexpandasindex": 18, "424": 18, "425": 18, "426": 18, "427": 18, "428": 18, "429": 18, "890": 18, "891": 18, "892": 18, "893": 18, "894": 18, "895": 18, "896": 18, "dldposxpandasindexpandasindex": 18, "countslong_nam": 18, "countsmetadata": 18, "robust": 18, "outlier": 18, "domin": 18, "0x7f6c31d44a60": 18, "44798": 18, "44799": 18, "spatial": 18, "transmiss": 18, "res_t05": 18, "res_t10": 18, "03": 18, "layout": 18, "tight": 18, "0x7f6c31b02430": 18, "dld": 18, "44797": 18, "hit": 18, "better": [18, 23], "precis": 18, "photon": [18, 23], "proper": 18, "again": [18, 21], "dldtime": [18, 23], "650": 18, "1050": 18, "250": [18, 19, 20], "suppress": 18, "annoi": 18, "4000": 18, "4120": 18, "4200": 18, "5e": 18, "9886e": 18, "6286e": 18, "05": [18, 23], "6618227": 18, "4429469": 18, "5727e": 18, "9058e": 18, "7998131": 18, "04277721": 18, "9964": 18, "510990": 18, "4231": 18, "304199": 18, "344721": 18, "658318": 18, "4232": 18, "199219": 18, "323279": 18, "738243": 18, "4238": 18, "759766": 18, "166958": 18, "747647": 18, "816895": 18, "165603": 18, "745": 18, "206335": 18, "4527": 18, "128418": 18, "467518": 18, "newli": 18, "30": [18, 23], "ll": 18, "explicitli": 18, "alpha": 18, "compens": [18, 23], "wai": [18, 21], "31": 18, "111": 18, "sase": [18, 23], "36": [18, 23], "44824": 18, "44825": 18, "44826": 18, "44827": 18, "37": 18, "delay_start": 18, "delay_stop": 18, "1462": 18, "1464": 18, "85": 18, "bg": 18, "isel": 18, "0x7f6c32795100": 18, "40": 18, "1463": 18, "invert": 18, "001": [18, 23], "preserv": 18, "room": 18, "42": 18, "sel": 18, "tight_layout": 18, "intens": [18, 19, 21, 23], "variat": [18, 23], "mainli": 18, "inhomogen": 18, "thu": [18, 21], "inequival": 18, "spent": 18, "44": [18, 23], "0x7f6c32347c10": 18, "45": 18, "49": [18, 23], "0x7f6c323620d0": 18, "igor": 18, "binari": 18, "soon": [18, 23], "51": 18, "ramp": 19, "timezon": 19, "tzoffset": 19, "getmtim": 19, "1594998158": 19, "utim": 19, "337": 19, "289": 19, "327": 19, "187": 19, "344": 19, "137": 19, "258": 19, "189": 19, "161": 19, "158": 19, "236": 19, "127": 19, "136": 19, "_1": 19, "76000": 19, "65500": 19, "66000": [19, 21], "t_b": 19, "temp": 19, "temperature_data": 19, "sample_temperatur": [19, 23], "270": 19, "0x7f36afeeeac0": 19, "fluctuat": [19, 23], "throughout": 19, "0x7f36af9f05b0": 19, "res_norm": 19, "0x7f36af996cd0": 19, "hubbard": 19, "versu": 19, "0x7f36af6285b0": 19, "even": [20, 23], "though": 20, "252": 20, "361": 20, "251": 20, "144": 20, "156": 20, "254": 20, "tell": 20, "ratio": 20, "gamma_m": 20, "gamma_k": 20, "non": [20, 21], "155": 20, "370": 20, "66300": 20, "0x7f12d721c280": 20, "background": [21, 23], "dither": 21, "four": 21, "res01": 21, "0x7fc0681a25e0": 21, "notic": 21, "oscil": 21, "verifi": 21, "res02": 21, "66": 21, "0x7fc068981cd0": 21, "smaller": 21, "natur": 21, "66600": 21, "66605": 21, "res11": 21, "0x7fc04f957520": 21, "mitig": 21, "problem": 21, "gap": 21, "right": 21, "quasi": [21, 23], "lose": 21, "importantli": 21, "begin": 21, "df_backup": 21, "longer": 21, "177981": 21, "157400": 21, "143757": 21, "66454": 21, "992979": 21, "808497": 21, "res12": 21, "0x7fc04f9affa0": 21, "clearli": 21, "exactli": 21, "res13": 21, "0x7fc04fb93b20": 21, "produc": 21, "gave": 21, "res03": 21, "0x7fc04f9de130": 21, "absent": 21, "similarli": 21, "intrins": 21, "deterior": 21, "resolut": 21, "res14": 21, "0x7fc04fa8b8e0": 21, "stepsiz": 21, "shown": 21, "less": 21, "sensit": 21, "exact": 21, "lead": 21, "mix": 21, "voxel": 21, "loss": 21, "substanti": 21, "nevertheless": 21, "res15": 21, "0x7fc04fa060d0": 21, "temperatur": [22, 24], "arp": [22, 24], "mechan": 23, "manner": 23, "subsequ": 23, "modif": 23, "administr": 23, "setup": [23, 26], "ref": 23, "example_config": 23, "ship": 23, "typic": 23, "disabl": 23, "t_n": 23, "125e": 23, "adc_bin": 23, "jitter_column": 23, "timed_dataframe_unit_tim": 23, "150000": 23, "cutoff": 23, "132250": 23, "512": 23, "unbin": 23, "1792": 23, "132000": 23, "138000": 23, "2048": 23, "1900": 23, "25600": 23, "flip_time_axi": 23, "multithread": 23, "worker": 23, "copy_tool_sourc": 23, "copy_tool_dest": 23, "localdatastor": 23, "copy_tool_kwd": 23, "ntask": 23, "stream_0": 23, "stream_1": 23, "stream_2": 23, "stream_4": 23, "eventid": 23, "tof_voltag": 23, "extractor_voltag": 23, "extractor_curr": 23, "cryo_temperatur": 23, "dld_time": 23, "128000": 23, "700": 23, "radial": 23, "3000": 23, "058206295066418": 23, "684410678887588e": 23, "440035779171833": 23, "136000": 23, "kx_scale": 23, "010729535670610963": 23, "ky_scal": 23, "feature_point": 23, "delaystag": [23, 26], "p1": 23, "p2": 23, "32000": 23, "engin": 23, "aa0": 23, "17668": 23, "getdata": 23, "pv": 23, "epics_pv": 23, "fa_in_channel": 23, "hor": 23, "fa_hor_channel": 23, "contrast": 23, "ca_in_channel": 23, "aperture_config": 23, "2018": 23, "23t19": 23, "fa_siz": 23, "750": 23, "75": 23, "ca_siz": 23, "2020": 23, "lens_mode_config": 23, "0_20vtof_v3": 23, "6000": 23, "uca": 23, "1200": 23, "ufa": 23, "z1": 23, "2452": 23, "z2": 23, "1489": 23, "2494": 23, "489": 23, "228": 23, "82": 23, "232": 23, "h": 23, "mcpfront": 23, "0_30vtof_453ns_focu": 23, "403": 23, "2500": 23, "208": 23, "68": 23, "735": 23, "hand": 23, "took": 23, "year": 23, "beamtimeid": 23, "intermedi": 23, "sinc": 23, "probabl": 23, "lot": 23, "dispos": 23, "ubid_offset": 23, "forward_fill_iter": 23, "split_sector_id_from_dld_tim": 23, "0576131995767355e": 23, "corrected_delay_column": 23, "pumpprobetim": 23, "channelalia": 23, "uncategoris": 23, "diag": 23, "timinginfo": 23, "time1": 23, "bunch_first_index": 23, "exp": 23, "dld1": 23, "special": 23, "dldaux": 23, "dldauxchannel": 23, "pulser": 23, "approx": 23, "35000": 23, "33000": 23, "fl1": 23, "pg": 23, "sis8300": 23, "100mhz": 23, "ch6": 23, "td": 23, "monochromat": 23, "monochrom": 23, "gmd": 23, "averag": 23, "bda": 23, "arriv": 23, "vital": 23, "dbc2": 23, "sdiag": 23, "fl0": 23, "arrival_tim": 23, "sa1": 23, "comp": 23, "zraw": 23, "sync": 23, "laser": 23, "lock": 23, "f1": 23, "osc": 23, "fmc0": 23, "md22": 23, "encoder_posit": 23, "rd": 23, "dgroup": 23, "stream_name_prefix": 23, "pbd": 23, "gmd_data_gmd_data": 23, "pbd2": 23, "fl2photdiag_pbd2_gmd_data": 23, "fl1user1": 23, "flash1_user1_stream_2": 23, "fl1user2": 23, "flash1_user2_stream_2": 23, "flash1_user3_stream_2": 23, "fl2user1": 23, "flash2_user1_stream_2": 23, "fl2user2": 23, "flash2_user2_stream_2": 23, "nxmpes_config_hextof_light": 23, "fake": 24, "pipelin": 24, "venv": 25, "pyenv": 25, "conda": 25, "maco": 25, "jupyt": 25, "kernel": 25, "ipykernel": 25, "sed_kernel": 25, "feel": 25, "submit": 25, "prepar": 26, "cleanup": 26, "chessi": 26, "optic": 26, "spot": 26, "spectrum": 26}, "objects": {"sed": [[5, 0, 0, "-", "binning"], [8, 0, 0, "-", "core"], [11, 0, 0, "-", "diagnostics"], [12, 0, 0, "-", "io"]], "sed.binning": [[5, 1, 1, "", "bin_dataframe"], [5, 1, 1, "", "bin_partition"], [5, 0, 0, "-", "numba_bin"], [5, 0, 0, "-", "utils"]], "sed.binning.numba_bin": [[5, 1, 1, "", "binsearch"], [5, 1, 1, "", "numba_histogramdd"]], "sed.binning.utils": [[5, 1, 1, "", "bin_centers_to_bin_edges"], [5, 1, 1, "", "bin_edges_to_bin_centers"], [5, 1, 1, "", "simplify_binning_arguments"]], "sed.calibrator": [[6, 0, 0, "-", "delay"], [6, 0, 0, "-", "energy"], [6, 0, 0, "-", "momentum"]], "sed.calibrator.delay": [[6, 2, 1, "", "DelayCalibrator"], [6, 1, 1, "", "extract_delay_stage_parameters"], [6, 1, 1, "", "mm_to_ps"]], "sed.calibrator.delay.DelayCalibrator": [[6, 3, 1, "", "add_offsets"], [6, 3, 1, "", "append_delay_axis"]], "sed.calibrator.energy": [[6, 2, 1, "", "EnergyCalibrator"], [6, 1, 1, "", "correction_function"], [6, 1, 1, "", "extract_bias"], [6, 1, 1, "", "find_correspondence"], [6, 1, 1, "", "find_nearest"], [6, 1, 1, "", "fit_energy_calibration"], [6, 1, 1, "", "normspec"], [6, 1, 1, "", "peakdetect1d"], [6, 1, 1, "", "peaksearch"], [6, 1, 1, "", "poly_energy_calibration"], [6, 1, 1, "", "range_convert"], [6, 1, 1, "", "tof2ev"], [6, 1, 1, "", "tof2evpoly"], [6, 1, 1, "", "tof2ns"]], "sed.calibrator.energy.EnergyCalibrator": [[6, 3, 1, "", "add_offsets"], [6, 3, 1, "", "add_ranges"], [6, 3, 1, "", "adjust_energy_correction"], [6, 3, 1, "", "adjust_ranges"], [6, 3, 1, "", "align_dld_sectors"], [6, 3, 1, "", "append_energy_axis"], [6, 3, 1, "", "append_tof_ns_axis"], [6, 3, 1, "", "apply_energy_correction"], [6, 3, 1, "", "bin_data"], [6, 3, 1, "", "calibrate"], [6, 4, 1, "", "dup"], [6, 3, 1, "", "feature_extract"], [6, 3, 1, "", "gather_calibration_metadata"], [6, 3, 1, "", "gather_correction_metadata"], [6, 3, 1, "", "load_data"], [6, 3, 1, "", "normalize"], [6, 4, 1, "", "nranges"], [6, 4, 1, "", "ntraces"], [6, 3, 1, "", "view"]], "sed.calibrator.momentum": [[6, 2, 1, "", "MomentumCorrector"], [6, 1, 1, "", "apply_dfield"], [6, 1, 1, "", "cm2palette"], [6, 1, 1, "", "detector_coordinates_2_k_coordinates"], [6, 1, 1, "", "dictmerge"], [6, 1, 1, "", "generate_inverse_dfield"], [6, 1, 1, "", "load_dfield"]], "sed.calibrator.momentum.MomentumCorrector": [[6, 3, 1, "", "add_features"], [6, 3, 1, "", "append_k_axis"], [6, 3, 1, "", "apply_correction"], [6, 3, 1, "", "apply_corrections"], [6, 3, 1, "", "calc_geometric_distances"], [6, 3, 1, "", "calc_inverse_dfield"], [6, 3, 1, "", "calc_symmetry_scores"], [6, 3, 1, "", "calibrate"], [6, 3, 1, "", "coordinate_transform"], [6, 3, 1, "", "feature_extract"], [6, 3, 1, "", "feature_select"], [6, 4, 1, "", "features"], [6, 3, 1, "", "gather_calibration_metadata"], [6, 3, 1, "", "gather_correction_metadata"], [6, 3, 1, "", "load_data"], [6, 3, 1, "", "pose_adjustment"], [6, 3, 1, "", "reset_deformation"], [6, 3, 1, "", "select_k_range"], [6, 3, 1, "", "select_slice"], [6, 3, 1, "", "select_slicer"], [6, 3, 1, "", "spline_warp_estimate"], [6, 4, 1, "", "symscores"], [6, 3, 1, "", "update_deformation"], [6, 3, 1, "", "view"]], "sed.core": [[8, 2, 1, "", "SedProcessor"], [7, 0, 0, "-", "config"], [10, 0, 0, "-", "dfops"], [14, 0, 0, "-", "metadata"]], "sed.core.SedProcessor": [[8, 3, 1, "", "add_attribute"], [8, 3, 1, "", "add_delay_offset"], [8, 3, 1, "", "add_energy_offset"], [8, 3, 1, "", "add_jitter"], [8, 3, 1, "", "add_time_stamped_data"], [8, 3, 1, "", "adjust_energy_correction"], [8, 3, 1, "", "align_dld_sectors"], [8, 3, 1, "", "append_energy_axis"], [8, 3, 1, "", "append_tof_ns_axis"], [8, 3, 1, "", "apply_energy_correction"], [8, 3, 1, "", "apply_momentum_calibration"], [8, 3, 1, "", "apply_momentum_correction"], [8, 4, 1, "", "attributes"], [8, 3, 1, "", "bin_and_load_momentum_calibration"], [8, 4, 1, "", "binned"], [8, 3, 1, "", "calibrate_delay_axis"], [8, 3, 1, "", "calibrate_energy_axis"], [8, 3, 1, "", "calibrate_momentum_axes"], [8, 3, 1, "", "compute"], [8, 4, 1, "", "config"], [8, 3, 1, "", "cpy"], [8, 4, 1, "", "dataframe"], [8, 3, 1, "", "define_features"], [8, 4, 1, "", "files"], [8, 3, 1, "", "filter_column"], [8, 3, 1, "", "find_bias_peaks"], [8, 3, 1, "", "generate_splinewarp"], [8, 3, 1, "", "get_normalization_histogram"], [8, 3, 1, "", "load"], [8, 3, 1, "", "load_bias_series"], [8, 4, 1, "", "normalization_histogram"], [8, 4, 1, "", "normalized"], [8, 3, 1, "", "pose_adjustment"], [8, 3, 1, "", "pre_binning"], [8, 3, 1, "", "save"], [8, 3, 1, "", "save_delay_calibration"], [8, 3, 1, "", "save_delay_offsets"], [8, 3, 1, "", "save_energy_calibration"], [8, 3, 1, "", "save_energy_correction"], [8, 3, 1, "", "save_energy_offset"], [8, 3, 1, "", "save_momentum_calibration"], [8, 3, 1, "", "save_splinewarp"], [8, 3, 1, "", "save_transformations"], [8, 3, 1, "", "save_workflow_params"], [8, 4, 1, "", "timed_dataframe"], [8, 3, 1, "", "view_event_histogram"]], "sed.core.config": [[7, 1, 1, "", "complete_dictionary"], [7, 1, 1, "", "load_config"], [7, 1, 1, "", "parse_config"], [7, 1, 1, "", "save_config"]], "sed.core.dfops": [[10, 1, 1, "", "add_time_stamped_data"], [10, 1, 1, "", "apply_filter"], [10, 1, 1, "", "apply_jitter"], [10, 1, 1, "", "backward_fill_lazy"], [10, 1, 1, "", "drop_column"], [10, 1, 1, "", "forward_fill_lazy"], [10, 1, 1, "", "map_columns_2d"], [10, 1, 1, "", "offset_by_other_columns"]], "sed.core.metadata": [[14, 5, 1, "", "DuplicateEntryError"], [14, 2, 1, "", "MetaHandler"]], "sed.core.metadata.MetaHandler": [[14, 3, 1, "", "add"], [14, 4, 1, "", "metadata"]], "sed.dataset": [[9, 0, 0, "-", "dataset"]], "sed.dataset.dataset": [[9, 2, 1, "", "Dataset"], [9, 2, 1, "", "DatasetsManager"]], "sed.dataset.dataset.Dataset": [[9, 4, 1, "", "available"], [9, 4, 1, "", "data_name"], [9, 4, 1, "", "existing_data_paths"], [9, 3, 1, "", "get"], [9, 3, 1, "", "remove"]], "sed.dataset.dataset.DatasetsManager": [[9, 6, 1, "", "FILENAME"], [9, 6, 1, "", "NAME"], [9, 3, 1, "", "add"], [9, 6, 1, "", "json_path"], [9, 3, 1, "", "load_datasets_dict"], [9, 3, 1, "", "remove"]], "sed.diagnostics": [[11, 1, 1, "", "grid_histogram"], [11, 1, 1, "", "plot_single_hist"]], "sed.io": [[12, 1, 1, "", "load_h5"], [12, 1, 1, "", "load_tiff"], [12, 1, 1, "", "to_h5"], [12, 1, 1, "", "to_nexus"], [12, 1, 1, "", "to_tiff"]], "sed.loader.base": [[13, 0, 0, "-", "loader"]], "sed.loader.base.loader": [[13, 2, 1, "", "BaseLoader"], [13, 6, 1, "", "LOADER"]], "sed.loader.base.loader.BaseLoader": [[13, 3, 1, "", "get_count_rate"], [13, 3, 1, "", "get_elapsed_time"], [13, 3, 1, "", "get_files_from_run_id"], [13, 3, 1, "", "read_dataframe"], [13, 6, 1, "", "supported_file_types"]], "sed.loader.flash": [[13, 0, 0, "-", "loader"], [13, 0, 0, "-", "metadata"]], "sed.loader.flash.loader": [[13, 2, 1, "", "FlashLoader"], [13, 6, 1, "", "LOADER"]], "sed.loader.flash.loader.FlashLoader": [[13, 4, 1, "", "available_channels"], [13, 3, 1, "", "buffer_file_handler"], [13, 3, 1, "", "concatenate_channels"], [13, 3, 1, "", "create_buffer_file"], [13, 3, 1, "", "create_dataframe_per_channel"], [13, 3, 1, "", "create_dataframe_per_electron"], [13, 3, 1, "", "create_dataframe_per_file"], [13, 3, 1, "", "create_dataframe_per_pulse"], [13, 3, 1, "", "create_dataframe_per_train"], [13, 3, 1, "", "create_multi_index_per_electron"], [13, 3, 1, "", "create_multi_index_per_pulse"], [13, 3, 1, "", "create_numpy_array_per_channel"], [13, 6, 1, "", "files"], [13, 3, 1, "", "get_channels"], [13, 3, 1, "", "get_count_rate"], [13, 3, 1, "", "get_elapsed_time"], [13, 3, 1, "", "get_files_from_run_id"], [13, 3, 1, "", "initialize_paths"], [13, 6, 1, "", "metadata"], [13, 3, 1, "", "parquet_handler"], [13, 3, 1, "", "parse_metadata"], [13, 3, 1, "", "read_dataframe"], [13, 3, 1, "", "reset_multi_index"], [13, 6, 1, "", "runs"], [13, 6, 1, "", "supported_file_types"]], "sed.loader.flash.metadata": [[13, 2, 1, "", "MetadataRetriever"]], "sed.loader.flash.metadata.MetadataRetriever": [[13, 3, 1, "", "get_metadata"]], "sed.loader.generic": [[13, 0, 0, "-", "loader"]], "sed.loader.generic.loader": [[13, 2, 1, "", "GenericLoader"], [13, 6, 1, "", "LOADER"]], "sed.loader.generic.loader.GenericLoader": [[13, 6, 1, "", "files"], [13, 3, 1, "", "get_count_rate"], [13, 3, 1, "", "get_elapsed_time"], [13, 3, 1, "", "get_files_from_run_id"], [13, 6, 1, "", "metadata"], [13, 3, 1, "", "read_dataframe"], [13, 6, 1, "", "runs"], [13, 6, 1, "", "supported_file_types"]], "sed.loader": [[13, 0, 0, "-", "loader_interface"], [13, 0, 0, "-", "mirrorutil"], [13, 0, 0, "-", "utils"]], "sed.loader.loader_interface": [[13, 1, 1, "", "get_loader"], [13, 1, 1, "", "get_names_of_all_loaders"]], "sed.loader.mirrorutil": [[13, 2, 1, "", "CopyTool"], [13, 1, 1, "", "get_target_dir"], [13, 1, 1, "", "mycopy"], [13, 1, 1, "", "mymakedirs"]], "sed.loader.mirrorutil.CopyTool": [[13, 3, 1, "", "cleanup_oldest_scan"], [13, 3, 1, "", "copy"], [13, 3, 1, "", "size"]], "sed.loader.mpes": [[13, 0, 0, "-", "loader"]], "sed.loader.mpes.loader": [[13, 6, 1, "", "LOADER"], [13, 2, 1, "", "MpesLoader"], [13, 1, 1, "", "get_archiver_data"], [13, 1, 1, "", "get_attribute"], [13, 1, 1, "", "get_count_rate"], [13, 1, 1, "", "get_elapsed_time"], [13, 1, 1, "", "get_groups_and_aliases"], [13, 1, 1, "", "hdf5_to_array"], [13, 1, 1, "", "hdf5_to_dataframe"], [13, 1, 1, "", "hdf5_to_timed_array"], [13, 1, 1, "", "hdf5_to_timed_dataframe"]], "sed.loader.mpes.loader.MpesLoader": [[13, 6, 1, "", "files"], [13, 3, 1, "", "gather_metadata"], [13, 3, 1, "", "get_count_rate"], [13, 3, 1, "", "get_elapsed_time"], [13, 3, 1, "", "get_files_from_run_id"], [13, 3, 1, "", "get_start_and_end_time"], [13, 6, 1, "", "metadata"], [13, 3, 1, "", "read_dataframe"], [13, 6, 1, "", "runs"], [13, 6, 1, "", "supported_file_types"]], "sed.loader.sxp": [[13, 0, 0, "-", "loader"]], "sed.loader.sxp.loader": [[13, 6, 1, "", "LOADER"], [13, 2, 1, "", "SXPLoader"]], "sed.loader.sxp.loader.SXPLoader": [[13, 4, 1, "", "available_channels"], [13, 3, 1, "", "buffer_file_handler"], [13, 3, 1, "", "concatenate_channels"], [13, 3, 1, "", "create_buffer_file"], [13, 3, 1, "", "create_dataframe_per_channel"], [13, 3, 1, "", "create_dataframe_per_electron"], [13, 3, 1, "", "create_dataframe_per_file"], [13, 3, 1, "", "create_dataframe_per_pulse"], [13, 3, 1, "", "create_dataframe_per_train"], [13, 3, 1, "", "create_multi_index_per_electron"], [13, 3, 1, "", "create_multi_index_per_pulse"], [13, 3, 1, "", "create_numpy_array_per_channel"], [13, 6, 1, "", "files"], [13, 3, 1, "", "gather_metadata"], [13, 3, 1, "", "get_channels"], [13, 3, 1, "", "get_count_rate"], [13, 3, 1, "", "get_elapsed_time"], [13, 3, 1, "", "get_files_from_run_id"], [13, 3, 1, "", "initialize_paths"], [13, 6, 1, "", "metadata"], [13, 3, 1, "", "parquet_handler"], [13, 3, 1, "", "read_dataframe"], [13, 3, 1, "", "reset_multi_index"], [13, 6, 1, "", "runs"], [13, 6, 1, "", "supported_file_types"]], "sed.loader.utils": [[13, 1, 1, "", "gather_files"], [13, 1, 1, "", "parse_h5_keys"], [13, 1, 1, "", "split_channel_bitwise"], [13, 1, 1, "", "split_dld_time_from_sector_id"]]}, "objtypes": {"0": "py:module", "1": "py:function", "2": "py:class", "3": "py:method", "4": "py:property", "5": "py:exception", "6": "py:attribute"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "function", "Python function"], "2": ["py", "class", "Python class"], "3": ["py", "method", "Python method"], "4": ["py", "property", "Python property"], "5": ["py", "exception", "Python exception"], "6": ["py", "attribute", "Python attribute"]}, "titleterms": {"sed": [0, 1, 24], "document": [0, 3], "user": [0, 9, 24], "guid": [0, 24], "exampl": [0, 9, 23], "api": [0, 4, 9], "commun": 0, "contribut": [0, 1], "get": [1, 9, 18], "start": 1, "develop": [1, 2, 25], "workflow": [1, 16, 18, 26], "pull": 1, "request": 1, "guidelin": 1, "loader": [1, 13], "how": 3, "maintain": 3, "releas": 3, "bin": [5, 15, 16, 17, 18, 19, 20], "main": 5, "function": 5, "us": [5, 9, 16, 19, 21], "helper": 5, "calibr": [6, 16, 18, 19, 20], "momentum": [6, 16, 20, 23], "correct": [6, 16, 18, 20, 21], "energi": [6, 16, 18], "delai": [6, 16, 18], "config": [7, 18], "core": 8, "dataset": 9, "remov": 9, "attribut": 9, "ad": 9, "custom": 9, "datasetsmanag": 9, "default": [9, 23], "json": 9, "datafram": [10, 15, 18], "oper": 10, "diagnost": 11, "io": 12, "data": [13, 15, 16, 17, 18, 19, 20, 21], "interfac": 13, "abstract": 13, "baseload": 13, "genericload": 13, "mpesload": 13, "flashload": 13, "sxploader": 13, "util": 13, "metadata": [14, 17], "demonstr": [15, 16], "local": 15, "gener": [15, 17, 18, 20], "fake": 15, "defin": [15, 16, 19], "rang": [15, 16, 19], "comput": [15, 16, 17, 18, 19], "along": 15, "panda": 15, "transform": 15, "dask": 15, "distribut": 15, "partit": 15, "convers": 16, "pipelin": 16, "time": [16, 18, 19], "resolv": 16, "arp": [16, 19], "store": [16, 17], "zenodo": 16, "load": [16, 17, 18, 19, 20, 21], "distort": [16, 20], "1": 16, "step": 16, "2": 16, "3": 16, "option": 16, "3a": 16, "4": 16, "5": 16, "1a": 16, "1st": 16, "visual": [16, 18, 19], "histogram": [16, 18], "volum": [16, 17, 19], "some": [16, 19], "nexu": 17, "file": [17, 18, 23], "final": 17, "tutori": 18, "from": 18, "hextof": [18, 23], "instrument": 18, "flash": [18, 23], "prepar": 18, "import": 18, "necessari": 18, "librari": 18, "path": 18, "setup": 18, "cleanup": 18, "previou": 18, "chessi": 18, "sampl": 18, "run": 18, "processor": 18, "instanc": 18, "add": 18, "jitter": [18, 21], "inspect": 18, "event": 18, "result": 18, "optic": 18, "spot": 18, "profil": 18, "sector": 18, "align": 18, "flight": 18, "spectrum": 18, "find": 18, "paramet": 18, "axi": 18, "offset": 18, "save": 18, "plot": 18, "delaystag": 18, "valu": 18, "entir": 18, "temperatur": 19, "depend": 19, "stamp": 19, "extern": 19, "orthorhomb": 20, "symmetri": 20, "featur": 20, "definit": 20, "spline": 20, "warp": 20, "ax": 20, "top": 20, "valenc": 20, "band": 20, "configur": 23, "set": 23, "mpe": 23, "meti": 23, "microscop": 23, "fhi": 23, "berlin": 23, "desi": 23, "instal": [24, 25], "basic": 24, "concept": 24, "advanc": 24, "topic": 24, "version": 25}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.todo": 2, "sphinx.ext.viewcode": 1, "nbsphinx": 4, "sphinx": 58}, "alltitles": {"SED documentation": [[0, "sed-documentation"]], "User guide": [[0, "user-guide"]], "Examples": [[0, "examples"]], "API": [[0, "api"], [4, "api"], [9, "module-sed.dataset.dataset"]], "Community and contribution guide": [[0, "community-and-contribution-guide"]], "Contributing to sed": [[1, "contributing-to-sed"]], "Getting Started": [[1, "getting-started"]], "Development Workflow": [[1, "development-workflow"]], "Pull Request Guidelines": [[1, "pull-request-guidelines"]], "Developing a Loader": [[1, "developing-a-loader"]], "Development": [[2, "development"]], "How to Maintain": [[3, "how-to-maintain"]], "Documentation": [[3, "documentation"]], "Release": [[3, "release"]], "Binning": [[5, "binning"], [18, "Binning"]], "Main functions": [[5, "module-sed.binning"]], "Used helper functions": [[5, "module-sed.binning.numba_bin"]], "Calibrator": [[6, "calibrator"]], "Momentum calibration and correction": [[6, "module-sed.calibrator.momentum"]], "Energy calibration and correction": [[6, "module-sed.calibrator.energy"]], "Delay calibration and correction": [[6, "module-sed.calibrator.delay"]], "Config": [[7, "module-sed.core.config"]], "Core": [[8, "module-sed.core"]], "Dataset": [[9, "dataset"]], "Getting datasets": [[9, "getting-datasets"]], "get()": [[9, "get"]], "remove()": [[9, "remove"]], "Attributes useful for user": [[9, "attributes-useful-for-user"]], "Example of adding custom datasets": [[9, "example-of-adding-custom-datasets"]], "DatasetsManager": [[9, "datasetsmanager"]], "Default datasets.json": [[9, "default-datasets-json"]], "Dataframe Operations": [[10, "module-sed.core.dfops"]], "Diagnostics": [[11, "module-sed.diagnostics"]], "IO": [[12, "module-sed.io"]], "Data loader": [[13, "data-loader"]], "Loader Interface": [[13, "module-sed.loader.loader_interface"]], "Abstract BaseLoader": [[13, "module-sed.loader.base.loader"]], "GenericLoader": [[13, "module-sed.loader.generic.loader"]], "MpesLoader": [[13, "module-sed.loader.mpes.loader"]], "FlashLoader": [[13, "module-sed.loader.flash.loader"]], "SXPLoader": [[13, "module-sed.loader.sxp.loader"]], "Utilities": [[13, "module-sed.loader.utils"]], "Metadata": [[14, "module-sed.core.metadata"]], "Binning demonstration on locally generated fake data": [[15, "Binning-demonstration-on-locally-generated-fake-data"]], "Generate Fake Data": [[15, "Generate-Fake-Data"]], "Define the binning range": [[15, "Define-the-binning-range"]], "Compute the binning along the pandas dataframe": [[15, "Compute-the-binning-along-the-pandas-dataframe"]], "Transform to dask dataframe": [[15, "Transform-to-dask-dataframe"]], "Compute distributed binning on the partitioned dask dataframe": [[15, "Compute-distributed-binning-on-the-partitioned-dask-dataframe"]], "Demonstration of the conversion pipeline using time-resolved ARPES data stored on Zenodo": [[16, "Demonstration-of-the-conversion-pipeline-using-time-resolved-ARPES-data-stored-on-Zenodo"]], "Load Data": [[16, "Load-Data"], [17, "Load-Data"], [19, "Load-Data"], [20, "Load-Data"], [21, "Load-Data"]], "Distortion correction and Momentum Calibration workflow": [[16, "Distortion-correction-and-Momentum-Calibration-workflow"]], "Distortion correction": [[16, "Distortion-correction"]], "1. step:": [[16, "1.-step:"]], "2. Step:": [[16, "2.-Step:"], [16, "id6"], [16, "id10"]], "3. Step:": [[16, "3.-Step:"], [16, "id11"]], "Optional (Step 3a):": [[16, "Optional-(Step-3a):"], [16, "id12"]], "4. Step:": [[16, "4.-Step:"], [16, "id13"]], "5. Step:": [[16, "5.-Step:"]], "Momentum calibration workflow": [[16, "Momentum-calibration-workflow"]], "1. Step:": [[16, "1.-Step:"], [16, "id9"]], "Optional (Step 1a):": [[16, "Optional-(Step-1a):"], [16, "id7"]], "Energy Correction and Calibration workflow": [[16, "Energy-Correction-and-Calibration-workflow"]], "Energy Correction (optional)": [[16, "Energy-Correction-(optional)"]], "1st step:": [[16, "1st-step:"]], "2. Step": [[16, "2.-Step"]], "Energy calibration": [[16, "Energy-calibration"]], "4. Delay calibration:": [[16, "4.-Delay-calibration:"]], "5. Visualization of calibrated histograms": [[16, "5.-Visualization-of-calibrated-histograms"]], "Define the binning ranges and compute calibrated data volume": [[16, "Define-the-binning-ranges-and-compute-calibrated-data-volume"], [19, "Define-the-binning-ranges-and-compute-calibrated-data-volume"]], "Some visualization:": [[16, "Some-visualization:"], [19, "Some-visualization:"]], "Binning with metadata generation, and storing into a NeXus file": [[17, "Binning-with-metadata-generation,-and-storing-into-a-NeXus-file"]], "Compute final data volume": [[17, "Compute-final-data-volume"]], "Tutorial for binning data from the HEXTOF instrument at FLASH": [[18, "Tutorial-for-binning-data-from-the-HEXTOF-instrument-at-FLASH"]], "Preparation": [[18, "Preparation"]], "Import necessary libraries": [[18, "Import-necessary-libraries"]], "Get data paths": [[18, "Get-data-paths"]], "Config setup": [[18, "Config-setup"]], "cleanup previous config files": [[18, "cleanup-previous-config-files"]], "Load a chessy sample run": [[18, "Load-a-chessy-sample-run"]], "Generate the Processor instance": [[18, "Generate-the-Processor-instance"]], "Add Jitter": [[18, "Add-Jitter"]], "inspect the dataframe": [[18, "inspect-the-dataframe"]], "Visualizing event histograms": [[18, "Visualizing-event-histograms"]], "visualize the result": [[18, "visualize-the-result"]], "Optical Spot Profile": [[18, "Optical-Spot-Profile"]], "Energy Calibration": [[18, "Energy-Calibration"]], "sector alignment": [[18, "sector-alignment"]], "time-of-flight spectrum": [[18, "time-of-flight-spectrum"]], "find calibration parameters": [[18, "find-calibration-parameters"]], "generate the energy axis": [[18, "generate-the-energy-axis"]], "Bin in energy": [[18, "Bin-in-energy"]], "correct offsets": [[18, "correct-offsets"]], "save the calibration parameters": [[18, "save-the-calibration-parameters"]], "Correct delay axis": [[18, "Correct-delay-axis"]], "Run the workflow from the config file": [[18, "Run-the-workflow-from-the-config-file"]], "plot the delayStage values": [[18, "plot-the-delayStage-values"]], "bin in the corrected delay axis": [[18, "bin-in-the-corrected-delay-axis"]], "save parameters": [[18, "save-parameters"]], "Run workflow entirely from config.": [[18, "Run-workflow-entirely-from-config."]], "Compute the results": [[18, "Compute-the-results"]], "Save results": [[18, "Save-results"]], "Binning of temperature-dependent ARPES data using time-stamped external temperature data": [[19, "Binning-of-temperature-dependent-ARPES-data-using-time-stamped-external-temperature-data"]], "Distortion correction with orthorhombic symmetry": [[20, "Distortion-correction-with-orthorhombic-symmetry"]], "Feature definition:": [[20, "Feature-definition:"]], "Spline-warp generation:": [[20, "Spline-warp-generation:"]], "Momentum calibration with orthorhombic axes": [[20, "Momentum-calibration-with-orthorhombic-axes"]], "Bin the top of the valence band": [[20, "Bin-the-top-of-the-valence-band"]], "Correct use of Jittering": [[21, "Correct-use-of-Jittering"]], "Configuration": [[23, "configuration"]], "Default configuration settings": [[23, "default-configuration-settings"]], "Example configuration file for mpes (METIS momentum microscope at FHI-Berlin)": [[23, "example-configuration-file-for-mpes-metis-momentum-microscope-at-fhi-berlin"]], "Example configuration file for flash (HEXTOF momentum microscope at FLASH, Desy)": [[23, "example-configuration-file-for-flash-hextof-momentum-microscope-at-flash-desy"]], "User Guide": [[24, "user-guide"]], "Installing SED": [[24, "installing-sed"]], "Basic concepts": [[24, "basic-concepts"]], "Advanced Topics": [[24, "advanced-topics"]], "Installation": [[25, "installation"]], "Development version": [[25, "development-version"]], "Workflows": [[26, "workflows"]]}, "indexentries": {"bin_centers_to_bin_edges() (in module sed.binning.utils)": [[5, "sed.binning.utils.bin_centers_to_bin_edges"]], "bin_dataframe() (in module sed.binning)": [[5, "sed.binning.bin_dataframe"]], "bin_edges_to_bin_centers() (in module sed.binning.utils)": [[5, "sed.binning.utils.bin_edges_to_bin_centers"]], "bin_partition() (in module sed.binning)": [[5, "sed.binning.bin_partition"]], "binsearch() (in module sed.binning.numba_bin)": [[5, "sed.binning.numba_bin.binsearch"]], "module": [[5, "module-sed.binning"], [5, "module-sed.binning.numba_bin"], [5, "module-sed.binning.utils"], [6, "module-sed.calibrator.delay"], [6, "module-sed.calibrator.energy"], [6, "module-sed.calibrator.momentum"], [7, "module-sed.core.config"], [8, "module-sed.core"], [9, "module-sed.dataset.dataset"], [10, "module-sed.core.dfops"], [11, "module-sed.diagnostics"], [12, "module-sed.io"], [13, "module-sed.loader.base.loader"], [13, "module-sed.loader.flash.loader"], [13, "module-sed.loader.flash.metadata"], [13, "module-sed.loader.generic.loader"], [13, "module-sed.loader.loader_interface"], [13, "module-sed.loader.mirrorutil"], [13, "module-sed.loader.mpes.loader"], [13, "module-sed.loader.sxp.loader"], [13, "module-sed.loader.utils"], [14, "module-sed.core.metadata"]], "numba_histogramdd() (in module sed.binning.numba_bin)": [[5, "sed.binning.numba_bin.numba_histogramdd"]], "sed.binning": [[5, "module-sed.binning"]], "sed.binning.numba_bin": [[5, "module-sed.binning.numba_bin"]], "sed.binning.utils": [[5, "module-sed.binning.utils"]], "simplify_binning_arguments() (in module sed.binning.utils)": [[5, "sed.binning.utils.simplify_binning_arguments"]], "delaycalibrator (class in sed.calibrator.delay)": [[6, "sed.calibrator.delay.DelayCalibrator"]], "energycalibrator (class in sed.calibrator.energy)": [[6, "sed.calibrator.energy.EnergyCalibrator"]], "momentumcorrector (class in sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.MomentumCorrector"]], "add_features() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.add_features"]], "add_offsets() (sed.calibrator.delay.delaycalibrator method)": [[6, "sed.calibrator.delay.DelayCalibrator.add_offsets"]], "add_offsets() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.add_offsets"]], "add_ranges() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.add_ranges"]], "adjust_energy_correction() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.adjust_energy_correction"]], "adjust_ranges() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.adjust_ranges"]], "align_dld_sectors() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.align_dld_sectors"]], "append_delay_axis() (sed.calibrator.delay.delaycalibrator method)": [[6, "sed.calibrator.delay.DelayCalibrator.append_delay_axis"]], "append_energy_axis() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.append_energy_axis"]], "append_k_axis() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.append_k_axis"]], "append_tof_ns_axis() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.append_tof_ns_axis"]], "apply_correction() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.apply_correction"]], "apply_corrections() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.apply_corrections"]], "apply_dfield() (in module sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.apply_dfield"]], "apply_energy_correction() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.apply_energy_correction"]], "bin_data() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.bin_data"]], "calc_geometric_distances() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.calc_geometric_distances"]], "calc_inverse_dfield() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.calc_inverse_dfield"]], "calc_symmetry_scores() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.calc_symmetry_scores"]], "calibrate() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.calibrate"]], "calibrate() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.calibrate"]], "cm2palette() (in module sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.cm2palette"]], "coordinate_transform() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.coordinate_transform"]], "correction_function() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.correction_function"]], "detector_coordinates_2_k_coordinates() (in module sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.detector_coordinates_2_k_coordinates"]], "dictmerge() (in module sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.dictmerge"]], "dup (sed.calibrator.energy.energycalibrator property)": [[6, "sed.calibrator.energy.EnergyCalibrator.dup"]], "extract_bias() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.extract_bias"]], "extract_delay_stage_parameters() (in module sed.calibrator.delay)": [[6, "sed.calibrator.delay.extract_delay_stage_parameters"]], "feature_extract() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.feature_extract"]], "feature_extract() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.feature_extract"]], "feature_select() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.feature_select"]], "features (sed.calibrator.momentum.momentumcorrector property)": [[6, "sed.calibrator.momentum.MomentumCorrector.features"]], "find_correspondence() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.find_correspondence"]], "find_nearest() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.find_nearest"]], "fit_energy_calibration() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.fit_energy_calibration"]], "gather_calibration_metadata() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.gather_calibration_metadata"]], "gather_calibration_metadata() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.gather_calibration_metadata"]], "gather_correction_metadata() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.gather_correction_metadata"]], "gather_correction_metadata() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.gather_correction_metadata"]], "generate_inverse_dfield() (in module sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.generate_inverse_dfield"]], "load_data() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.load_data"]], "load_data() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.load_data"]], "load_dfield() (in module sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.load_dfield"]], "mm_to_ps() (in module sed.calibrator.delay)": [[6, "sed.calibrator.delay.mm_to_ps"]], "normalize() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.normalize"]], "normspec() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.normspec"]], "nranges (sed.calibrator.energy.energycalibrator property)": [[6, "sed.calibrator.energy.EnergyCalibrator.nranges"]], "ntraces (sed.calibrator.energy.energycalibrator property)": [[6, "sed.calibrator.energy.EnergyCalibrator.ntraces"]], "peakdetect1d() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.peakdetect1d"]], "peaksearch() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.peaksearch"]], "poly_energy_calibration() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.poly_energy_calibration"]], "pose_adjustment() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.pose_adjustment"]], "range_convert() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.range_convert"]], "reset_deformation() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.reset_deformation"]], "sed.calibrator.delay": [[6, "module-sed.calibrator.delay"]], "sed.calibrator.energy": [[6, "module-sed.calibrator.energy"]], "sed.calibrator.momentum": [[6, "module-sed.calibrator.momentum"]], "select_k_range() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.select_k_range"]], "select_slice() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.select_slice"]], "select_slicer() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.select_slicer"]], "spline_warp_estimate() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.spline_warp_estimate"]], "symscores (sed.calibrator.momentum.momentumcorrector property)": [[6, "sed.calibrator.momentum.MomentumCorrector.symscores"]], "tof2ev() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.tof2ev"]], "tof2evpoly() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.tof2evpoly"]], "tof2ns() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.tof2ns"]], "update_deformation() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.update_deformation"]], "view() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.view"]], "view() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.view"]], "complete_dictionary() (in module sed.core.config)": [[7, "sed.core.config.complete_dictionary"]], "load_config() (in module sed.core.config)": [[7, "sed.core.config.load_config"]], "parse_config() (in module sed.core.config)": [[7, "sed.core.config.parse_config"]], "save_config() (in module sed.core.config)": [[7, "sed.core.config.save_config"]], "sed.core.config": [[7, "module-sed.core.config"]], "sedprocessor (class in sed.core)": [[8, "sed.core.SedProcessor"]], "add_attribute() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.add_attribute"]], "add_delay_offset() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.add_delay_offset"]], "add_energy_offset() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.add_energy_offset"]], "add_jitter() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.add_jitter"]], "add_time_stamped_data() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.add_time_stamped_data"]], "adjust_energy_correction() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.adjust_energy_correction"]], "align_dld_sectors() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.align_dld_sectors"]], "append_energy_axis() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.append_energy_axis"]], "append_tof_ns_axis() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.append_tof_ns_axis"]], "apply_energy_correction() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.apply_energy_correction"]], "apply_momentum_calibration() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.apply_momentum_calibration"]], "apply_momentum_correction() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.apply_momentum_correction"]], "attributes (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.attributes"]], "bin_and_load_momentum_calibration() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.bin_and_load_momentum_calibration"]], "binned (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.binned"]], "calibrate_delay_axis() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.calibrate_delay_axis"]], "calibrate_energy_axis() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.calibrate_energy_axis"]], "calibrate_momentum_axes() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.calibrate_momentum_axes"]], "compute() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.compute"]], "config (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.config"]], "cpy() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.cpy"]], "dataframe (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.dataframe"]], "define_features() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.define_features"]], "files (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.files"]], "filter_column() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.filter_column"]], "find_bias_peaks() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.find_bias_peaks"]], "generate_splinewarp() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.generate_splinewarp"]], "get_normalization_histogram() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.get_normalization_histogram"]], "load() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.load"]], "load_bias_series() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.load_bias_series"]], "normalization_histogram (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.normalization_histogram"]], "normalized (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.normalized"]], "pose_adjustment() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.pose_adjustment"]], "pre_binning() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.pre_binning"]], "save() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save"]], "save_delay_calibration() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_delay_calibration"]], "save_delay_offsets() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_delay_offsets"]], "save_energy_calibration() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_energy_calibration"]], "save_energy_correction() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_energy_correction"]], "save_energy_offset() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_energy_offset"]], "save_momentum_calibration() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_momentum_calibration"]], "save_splinewarp() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_splinewarp"]], "save_transformations() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_transformations"]], "save_workflow_params() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_workflow_params"]], "sed.core": [[8, "module-sed.core"]], "timed_dataframe (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.timed_dataframe"]], "view_event_histogram() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.view_event_histogram"]], "dataset (class in sed.dataset.dataset)": [[9, "sed.dataset.dataset.Dataset"]], "datasetsmanager (class in sed.dataset.dataset)": [[9, "sed.dataset.dataset.DatasetsManager"]], "filename (sed.dataset.dataset.datasetsmanager attribute)": [[9, "sed.dataset.dataset.DatasetsManager.FILENAME"]], "name (sed.dataset.dataset.datasetsmanager attribute)": [[9, "sed.dataset.dataset.DatasetsManager.NAME"]], "add() (sed.dataset.dataset.datasetsmanager static method)": [[9, "sed.dataset.dataset.DatasetsManager.add"]], "available (sed.dataset.dataset.dataset property)": [[9, "sed.dataset.dataset.Dataset.available"]], "data_name (sed.dataset.dataset.dataset property)": [[9, "sed.dataset.dataset.Dataset.data_name"]], "existing_data_paths (sed.dataset.dataset.dataset property)": [[9, "sed.dataset.dataset.Dataset.existing_data_paths"]], "get() (sed.dataset.dataset.dataset method)": [[9, "sed.dataset.dataset.Dataset.get"]], "json_path (sed.dataset.dataset.datasetsmanager attribute)": [[9, "sed.dataset.dataset.DatasetsManager.json_path"]], "load_datasets_dict() (sed.dataset.dataset.datasetsmanager static method)": [[9, "sed.dataset.dataset.DatasetsManager.load_datasets_dict"]], "remove() (sed.dataset.dataset.dataset method)": [[9, "sed.dataset.dataset.Dataset.remove"]], "remove() (sed.dataset.dataset.datasetsmanager static method)": [[9, "sed.dataset.dataset.DatasetsManager.remove"]], "sed.dataset.dataset": [[9, "module-sed.dataset.dataset"]], "add_time_stamped_data() (in module sed.core.dfops)": [[10, "sed.core.dfops.add_time_stamped_data"]], "apply_filter() (in module sed.core.dfops)": [[10, "sed.core.dfops.apply_filter"]], "apply_jitter() (in module sed.core.dfops)": [[10, "sed.core.dfops.apply_jitter"]], "backward_fill_lazy() (in module sed.core.dfops)": [[10, "sed.core.dfops.backward_fill_lazy"]], "drop_column() (in module sed.core.dfops)": [[10, "sed.core.dfops.drop_column"]], "forward_fill_lazy() (in module sed.core.dfops)": [[10, "sed.core.dfops.forward_fill_lazy"]], "map_columns_2d() (in module sed.core.dfops)": [[10, "sed.core.dfops.map_columns_2d"]], "offset_by_other_columns() (in module sed.core.dfops)": [[10, "sed.core.dfops.offset_by_other_columns"]], "sed.core.dfops": [[10, "module-sed.core.dfops"]], "grid_histogram() (in module sed.diagnostics)": [[11, "sed.diagnostics.grid_histogram"]], "plot_single_hist() (in module sed.diagnostics)": [[11, "sed.diagnostics.plot_single_hist"]], "sed.diagnostics": [[11, "module-sed.diagnostics"]], "load_h5() (in module sed.io)": [[12, "sed.io.load_h5"]], "load_tiff() (in module sed.io)": [[12, "sed.io.load_tiff"]], "sed.io": [[12, "module-sed.io"]], "to_h5() (in module sed.io)": [[12, "sed.io.to_h5"]], "to_nexus() (in module sed.io)": [[12, "sed.io.to_nexus"]], "to_tiff() (in module sed.io)": [[12, "sed.io.to_tiff"]], "baseloader (class in sed.loader.base.loader)": [[13, "sed.loader.base.loader.BaseLoader"]], "copytool (class in sed.loader.mirrorutil)": [[13, "sed.loader.mirrorutil.CopyTool"]], "flashloader (class in sed.loader.flash.loader)": [[13, "sed.loader.flash.loader.FlashLoader"]], "genericloader (class in sed.loader.generic.loader)": [[13, "sed.loader.generic.loader.GenericLoader"]], "loader (in module sed.loader.base.loader)": [[13, "sed.loader.base.loader.LOADER"]], "loader (in module sed.loader.flash.loader)": [[13, "sed.loader.flash.loader.LOADER"]], "loader (in module sed.loader.generic.loader)": [[13, "sed.loader.generic.loader.LOADER"]], "loader (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.LOADER"]], "loader (in module sed.loader.sxp.loader)": [[13, "sed.loader.sxp.loader.LOADER"]], "metadataretriever (class in sed.loader.flash.metadata)": [[13, "sed.loader.flash.metadata.MetadataRetriever"]], "mpesloader (class in sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.MpesLoader"]], "sxploader (class in sed.loader.sxp.loader)": [[13, "sed.loader.sxp.loader.SXPLoader"]], "available_channels (sed.loader.flash.loader.flashloader property)": [[13, "sed.loader.flash.loader.FlashLoader.available_channels"]], "available_channels (sed.loader.sxp.loader.sxploader property)": [[13, "sed.loader.sxp.loader.SXPLoader.available_channels"]], "buffer_file_handler() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.buffer_file_handler"]], "buffer_file_handler() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.buffer_file_handler"]], "cleanup_oldest_scan() (sed.loader.mirrorutil.copytool method)": [[13, "sed.loader.mirrorutil.CopyTool.cleanup_oldest_scan"]], "concatenate_channels() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.concatenate_channels"]], "concatenate_channels() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.concatenate_channels"]], "copy() (sed.loader.mirrorutil.copytool method)": [[13, "sed.loader.mirrorutil.CopyTool.copy"]], "create_buffer_file() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_buffer_file"]], "create_buffer_file() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_buffer_file"]], "create_dataframe_per_channel() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_dataframe_per_channel"]], "create_dataframe_per_channel() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_dataframe_per_channel"]], "create_dataframe_per_electron() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_dataframe_per_electron"]], "create_dataframe_per_electron() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_dataframe_per_electron"]], "create_dataframe_per_file() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_dataframe_per_file"]], "create_dataframe_per_file() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_dataframe_per_file"]], "create_dataframe_per_pulse() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_dataframe_per_pulse"]], "create_dataframe_per_pulse() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_dataframe_per_pulse"]], "create_dataframe_per_train() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_dataframe_per_train"]], "create_dataframe_per_train() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_dataframe_per_train"]], "create_multi_index_per_electron() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_multi_index_per_electron"]], "create_multi_index_per_electron() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_multi_index_per_electron"]], "create_multi_index_per_pulse() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_multi_index_per_pulse"]], "create_multi_index_per_pulse() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_multi_index_per_pulse"]], "create_numpy_array_per_channel() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_numpy_array_per_channel"]], "create_numpy_array_per_channel() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_numpy_array_per_channel"]], "files (sed.loader.flash.loader.flashloader attribute)": [[13, "sed.loader.flash.loader.FlashLoader.files"]], "files (sed.loader.generic.loader.genericloader attribute)": [[13, "sed.loader.generic.loader.GenericLoader.files"]], "files (sed.loader.mpes.loader.mpesloader attribute)": [[13, "sed.loader.mpes.loader.MpesLoader.files"]], "files (sed.loader.sxp.loader.sxploader attribute)": [[13, "sed.loader.sxp.loader.SXPLoader.files"]], "gather_files() (in module sed.loader.utils)": [[13, "sed.loader.utils.gather_files"]], "gather_metadata() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.gather_metadata"]], "gather_metadata() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.gather_metadata"]], "get_archiver_data() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.get_archiver_data"]], "get_attribute() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.get_attribute"]], "get_channels() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.get_channels"]], "get_channels() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.get_channels"]], "get_count_rate() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.get_count_rate"]], "get_count_rate() (sed.loader.base.loader.baseloader method)": [[13, "sed.loader.base.loader.BaseLoader.get_count_rate"]], "get_count_rate() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.get_count_rate"]], "get_count_rate() (sed.loader.generic.loader.genericloader method)": [[13, "sed.loader.generic.loader.GenericLoader.get_count_rate"]], "get_count_rate() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.get_count_rate"]], "get_count_rate() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.get_count_rate"]], "get_elapsed_time() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.get_elapsed_time"]], "get_elapsed_time() (sed.loader.base.loader.baseloader method)": [[13, "sed.loader.base.loader.BaseLoader.get_elapsed_time"]], "get_elapsed_time() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.get_elapsed_time"]], "get_elapsed_time() (sed.loader.generic.loader.genericloader method)": [[13, "sed.loader.generic.loader.GenericLoader.get_elapsed_time"]], "get_elapsed_time() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.get_elapsed_time"]], "get_elapsed_time() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.get_elapsed_time"]], "get_files_from_run_id() (sed.loader.base.loader.baseloader method)": [[13, "sed.loader.base.loader.BaseLoader.get_files_from_run_id"]], "get_files_from_run_id() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.get_files_from_run_id"]], "get_files_from_run_id() (sed.loader.generic.loader.genericloader method)": [[13, "sed.loader.generic.loader.GenericLoader.get_files_from_run_id"]], "get_files_from_run_id() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.get_files_from_run_id"]], "get_files_from_run_id() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.get_files_from_run_id"]], "get_groups_and_aliases() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.get_groups_and_aliases"]], "get_loader() (in module sed.loader.loader_interface)": [[13, "sed.loader.loader_interface.get_loader"]], "get_metadata() (sed.loader.flash.metadata.metadataretriever method)": [[13, "sed.loader.flash.metadata.MetadataRetriever.get_metadata"]], "get_names_of_all_loaders() (in module sed.loader.loader_interface)": [[13, "sed.loader.loader_interface.get_names_of_all_loaders"]], "get_start_and_end_time() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.get_start_and_end_time"]], "get_target_dir() (in module sed.loader.mirrorutil)": [[13, "sed.loader.mirrorutil.get_target_dir"]], "hdf5_to_array() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.hdf5_to_array"]], "hdf5_to_dataframe() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.hdf5_to_dataframe"]], "hdf5_to_timed_array() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.hdf5_to_timed_array"]], "hdf5_to_timed_dataframe() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.hdf5_to_timed_dataframe"]], "initialize_paths() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.initialize_paths"]], "initialize_paths() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.initialize_paths"]], "metadata (sed.loader.flash.loader.flashloader attribute)": [[13, "sed.loader.flash.loader.FlashLoader.metadata"]], "metadata (sed.loader.generic.loader.genericloader attribute)": [[13, "sed.loader.generic.loader.GenericLoader.metadata"]], "metadata (sed.loader.mpes.loader.mpesloader attribute)": [[13, "sed.loader.mpes.loader.MpesLoader.metadata"]], "metadata (sed.loader.sxp.loader.sxploader attribute)": [[13, "sed.loader.sxp.loader.SXPLoader.metadata"]], "mycopy() (in module sed.loader.mirrorutil)": [[13, "sed.loader.mirrorutil.mycopy"]], "mymakedirs() (in module sed.loader.mirrorutil)": [[13, "sed.loader.mirrorutil.mymakedirs"]], "parquet_handler() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.parquet_handler"]], "parquet_handler() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.parquet_handler"]], "parse_h5_keys() (in module sed.loader.utils)": [[13, "sed.loader.utils.parse_h5_keys"]], "parse_metadata() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.parse_metadata"]], "read_dataframe() (sed.loader.base.loader.baseloader method)": [[13, "sed.loader.base.loader.BaseLoader.read_dataframe"]], "read_dataframe() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.read_dataframe"]], "read_dataframe() (sed.loader.generic.loader.genericloader method)": [[13, "sed.loader.generic.loader.GenericLoader.read_dataframe"]], "read_dataframe() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.read_dataframe"]], "read_dataframe() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.read_dataframe"]], "reset_multi_index() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.reset_multi_index"]], "reset_multi_index() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.reset_multi_index"]], "runs (sed.loader.flash.loader.flashloader attribute)": [[13, "sed.loader.flash.loader.FlashLoader.runs"]], "runs (sed.loader.generic.loader.genericloader attribute)": [[13, "sed.loader.generic.loader.GenericLoader.runs"]], "runs (sed.loader.mpes.loader.mpesloader attribute)": [[13, "sed.loader.mpes.loader.MpesLoader.runs"]], "runs (sed.loader.sxp.loader.sxploader attribute)": [[13, "sed.loader.sxp.loader.SXPLoader.runs"]], "sed.loader.base.loader": [[13, "module-sed.loader.base.loader"]], "sed.loader.flash.loader": [[13, "module-sed.loader.flash.loader"]], "sed.loader.flash.metadata": [[13, "module-sed.loader.flash.metadata"]], "sed.loader.generic.loader": [[13, "module-sed.loader.generic.loader"]], "sed.loader.loader_interface": [[13, "module-sed.loader.loader_interface"]], "sed.loader.mirrorutil": [[13, "module-sed.loader.mirrorutil"]], "sed.loader.mpes.loader": [[13, "module-sed.loader.mpes.loader"]], "sed.loader.sxp.loader": [[13, "module-sed.loader.sxp.loader"]], "sed.loader.utils": [[13, "module-sed.loader.utils"]], "size() (sed.loader.mirrorutil.copytool method)": [[13, "sed.loader.mirrorutil.CopyTool.size"]], "split_channel_bitwise() (in module sed.loader.utils)": [[13, "sed.loader.utils.split_channel_bitwise"]], "split_dld_time_from_sector_id() (in module sed.loader.utils)": [[13, "sed.loader.utils.split_dld_time_from_sector_id"]], "supported_file_types (sed.loader.base.loader.baseloader attribute)": [[13, "sed.loader.base.loader.BaseLoader.supported_file_types"]], "supported_file_types (sed.loader.flash.loader.flashloader attribute)": [[13, "sed.loader.flash.loader.FlashLoader.supported_file_types"]], "supported_file_types (sed.loader.generic.loader.genericloader attribute)": [[13, "sed.loader.generic.loader.GenericLoader.supported_file_types"]], "supported_file_types (sed.loader.mpes.loader.mpesloader attribute)": [[13, "sed.loader.mpes.loader.MpesLoader.supported_file_types"]], "supported_file_types (sed.loader.sxp.loader.sxploader attribute)": [[13, "sed.loader.sxp.loader.SXPLoader.supported_file_types"]], "duplicateentryerror": [[14, "sed.core.metadata.DuplicateEntryError"]], "metahandler (class in sed.core.metadata)": [[14, "sed.core.metadata.MetaHandler"]], "add() (sed.core.metadata.metahandler method)": [[14, "sed.core.metadata.MetaHandler.add"]], "metadata (sed.core.metadata.metahandler property)": [[14, "sed.core.metadata.MetaHandler.metadata"]], "sed.core.metadata": [[14, "module-sed.core.metadata"]]}})
\ No newline at end of file
+Search.setIndex({"docnames": ["index", "misc/contributing", "misc/contribution", "misc/maintain", "sed/api", "sed/binning", "sed/calibrator", "sed/config", "sed/core", "sed/dataset", "sed/dfops", "sed/diagnostic", "sed/io", "sed/loader", "sed/metadata", "user_guide/advanced_topics", "user_guide/config", "user_guide/index", "user_guide/installation", "workflows/index"], "filenames": ["index.md", "misc/contributing.rst", "misc/contribution.md", "misc/maintain.rst", "sed/api.rst", "sed/binning.rst", "sed/calibrator.rst", "sed/config.rst", "sed/core.rst", "sed/dataset.rst", "sed/dfops.rst", "sed/diagnostic.rst", "sed/io.rst", "sed/loader.rst", "sed/metadata.rst", "user_guide/advanced_topics.md", "user_guide/config.md", "user_guide/index.md", "user_guide/installation.md", "workflows/index.md"], "titles": ["SED documentation", "Contributing to sed", "Development", "How to Maintain", "API", "Binning", "Calibrator", "Config", "Core", "Dataset", "Dataframe Operations", "Diagnostics", "IO", "Data loader", "Metadata", "&lt;no title&gt;", "Configuration", "User Guide", "Installation", "Workflows"], "terms": {"singl": [0, 5, 6, 8, 11, 12, 13, 16], "event": [0, 3, 6, 8, 16], "data": [0, 1, 3, 4, 5, 6, 8, 9, 10, 12, 14, 16], "frame": [0, 8], "i": [0, 1, 3, 5, 6, 7, 8, 9, 10, 12, 13, 14, 16, 18], "collect": [0, 6, 8, 13, 16], "routin": [0, 16], "util": [0, 5], "handl": [0, 11, 13], "photoelectron": 0, "resolv": [0, 13, 16], "datastream": 0, "It": [0, 3, 6, 13, 16], "featur": [0, 1, 5, 6, 8, 9, 16], "lazi": 0, "evalu": 0, "datafram": [0, 4, 5, 6, 8, 13, 16], "process": [0, 1, 3, 6, 9, 13, 16], "us": [0, 1, 3, 6, 8, 10, 12, 13, 16, 18], "dask": [0, 5, 6, 8, 10, 13, 16], "numba": [0, 5, 8, 16], "acceler": 0, "multi": 0, "dimension": [0, 5, 8, 10, 12, 13], "bin": [0, 4, 6, 8, 11, 13, 16, 18], "calibr": [0, 4, 8, 16], "correct": [0, 8, 12, 16], "trarp": [0, 16], "time": [0, 6, 8, 10, 12, 13, 16], "angl": [0, 6, 8], "photoemiss": [0, 1, 5], "spectroscopi": [0, 1], "dataset": [0, 3, 4, 6, 8, 13, 16], "The": [0, 1, 3, 5, 6, 7, 8, 9, 10, 12, 13, 16], "packag": [0, 3, 10, 14, 16], "ensur": [0, 1], "proven": 0, "fair": 0, "through": [0, 1], "metadata": [0, 4, 6, 8, 12, 13, 16], "track": [0, 5], "usag": [0, 13], "defin": [0, 5, 6, 8, 9, 13, 16], "nexu": [0, 8, 12, 16], "format": [0, 1, 6, 7, 8, 12, 13, 16], "we": [0, 1, 9, 10, 16], "introduc": [0, 1], "differ": [0, 3, 6, 7, 8, 13, 16], "function": [0, 1, 6, 7, 8, 10, 11, 13, 16], "sever": 0, "step": [0, 3, 5, 6, 8, 13, 16], "instal": [0, 1, 3], "basic": 0, "concept": 0, "advanc": 0, "topic": 0, "notebook": [0, 3, 8, 16, 18], "demonstr": 0, "end": [0, 1, 5, 6, 8, 13, 16], "analysi": 0, "workflow": [0, 2, 3, 6, 8, 16], "core": [0, 4, 5, 7, 10, 13, 14, 16], "oper": [0, 4], "loader": [0, 2, 4, 6, 8, 16], "diagnost": [0, 4, 6, 8, 16], "io": [0, 4], "config": [0, 1, 3, 4, 6, 8, 9, 13, 16], "inform": [0, 1, 6, 8, 9, 12, 13, 16], "about": [0, 9], "behind": 0, "thi": [0, 1, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16, 18], "theme": 0, "how": [0, 2, 5, 6, 8], "you": [0, 1, 3, 18], "can": [0, 1, 3, 5, 6, 7, 8, 9, 10, 12, 13, 14, 16, 18], "develop": [0, 17], "maintain": [0, 1, 2], "welcom": 1, "project": [1, 3], "collabor": 1, "open": [1, 3, 8, 16], "commun": 1, "multidimension": [1, 5, 6, 13, 16], "whether": [1, 6, 8, 9, 10, 13, 16], "ar": [1, 3, 5, 6, 7, 8, 9, 10, 12, 13, 16], "beamlin": [1, 16], "scientist": 1, "hope": 1, "creat": [1, 3, 7, 9, 13, 18], "your": [1, 18], "would": [1, 3, 9], "like": [1, 5, 12], "add": [1, 6, 8, 9, 10, 12, 13, 14], "new": [1, 3, 6, 9, 10, 13, 14, 18], "guid": 1, "walk": 1, "set": [1, 3, 5, 6, 7, 8, 9, 13], "up": [1, 3, 6, 13], "environ": [1, 3, 18], "clone": [1, 3, 18], "repositori": [1, 3, 18], "If": [1, 3, 5, 6, 8, 9, 10, 12, 13, 14, 16, 18], "member": 1, "local": [1, 3, 6, 8, 13, 16, 18], "machin": 1, "git": [1, 3, 18], "http": [1, 3, 6, 9, 16, 18], "github": [1, 3, 18], "com": [1, 3, 9, 18], "opencomp": [1, 3, 18], "fork": 1, "yourusernam": 1, "python": [1, 16, 18], "poetri": [1, 3], "have": [1, 3, 6, 8, 10, 12, 16, 18], "3": [1, 5, 6, 8, 9, 12, 13, 16, 18], "8": [1, 8, 13, 16], "9": [1, 16, 18], "10": [1, 3, 16], "11": [1, 16], "pip": [1, 3, 18], "pipx": [1, 3], "depend": [1, 3, 8, 13, 18], "navig": [1, 3], "directori": [1, 3, 7, 9, 13, 16], "includ": [1, 3, 6, 8, 10, 11, 12, 13, 16], "ones": [1, 6], "dev": [1, 18], "assum": [1, 6, 12], "version": [1, 3, 6, 13, 17], "pre": [1, 7, 8], "commit": 1, "hook": 1, "To": [1, 3, 5, 6], "code": [1, 5, 6, 13], "correctli": 1, "branch": [1, 3], "bug": 1, "fix": [1, 6, 10], "make": [1, 3, 5, 11, 16, 18], "chang": [1, 6, 8, 10, 16, 18], "checkout": 1, "b": [1, 3, 6, 8, 16], "write": [1, 3, 8, 12], "test": [1, 9], "cover": [1, 6, 8, 10], "run": [1, 3, 8, 10, 13, 16], "broken": [1, 16], "pytest": 1, "clear": 1, "concis": 1, "messag": [1, 14], "m": [1, 13, 16, 18], "push": [1, 3], "origin": [1, 6, 8], "against": 1, "main": [1, 3, 6, 9], "pleas": 1, "give": [1, 9, 14, 16], "brief": 1, "descript": [1, 13], "made": [1, 5, 8], "an": [1, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16, 18], "issu": [1, 3, 10], "refer": [1, 6, 8, 16], "number": [1, 3, 5, 6, 8, 10, 11, 12, 13, 14, 16], "befor": [1, 5, 6, 8, 10, 16], "merg": [1, 6, 7, 14], "must": [1, 8, 10], "pass": [1, 5, 6, 7, 8, 10, 13, 16], "follow": [1, 3, 5, 6, 8, 12, 16], "check": [1, 3, 5, 6], "lint": 1, "review": 1, "A": [1, 3, 5, 6, 7, 8, 13, 16], "provid": [1, 5, 6, 7, 8, 9, 10, 12, 13, 14, 16], "feedback": 1, "necessari": [1, 3, 16], "rebas": 1, "date": 1, "latest": [1, 3], "from": [1, 3, 5, 6, 7, 8, 9, 10, 12, 13, 14, 16], "onc": [1, 18], "all": [1, 5, 6, 8, 9, 10, 11, 13, 16, 18], "success": [1, 3, 16], "approv": 1, "below": [1, 5, 7, 16, 18], "should": [1, 5, 6, 8, 9, 12, 16], "subclass": [1, 6], "base": [1, 6, 7, 8, 9, 10, 11, 13, 14, 16], "baseload": [1, 6], "implement": [1, 6, 8, 9, 13, 16], "few": 1, "method": [1, 5, 6, 8, 13, 14, 16], "see": [1, 3, 6, 8, 9, 13, 16, 18], "abstract": 1, "more": [1, 10, 12], "class": [1, 6, 8, 9, 13, 14], "__name__": 1, "attribut": [1, 6, 8, 12, 13, 16], "which": [1, 5, 6, 8, 9, 10, 13, 14, 16], "select": [1, 3, 6, 8, 13, 16], "user": [1, 3, 5, 6, 7, 13, 16, 18], "file": [1, 3, 5, 6, 7, 8, 9, 12, 13], "gener": [1, 3, 6, 8, 13, 16], "exampl": [1, 5, 6, 8, 18], "At": [1, 3], "modul": [1, 5, 6, 7, 8, 9, 10, 11, 12, 13, 16], "yournameload": 1, "variabl": [1, 11], "regist": 1, "registri": 1, "interfac": 1, "also": [1, 3, 5, 6, 7, 8, 9, 10, 16], "small": 1, "document": [1, 2, 9], "doc": [1, 3], "rst": 1, "contribut": 2, "sed": [2, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16, 18], "get": [2, 13], "start": [2, 5, 6, 8, 13, 16], "pull": [2, 3, 18], "request": [2, 3, 5, 13, 16, 18], "guidelin": 2, "releas": 2, "build": 3, "cd": [3, 18], "copi": [3, 8, 9, 13, 16], "tutori": 3, "do": [3, 6, 8, 18], "slow": [3, 8], "down": 3, "significantli": 3, "requir": [3, 5, 6, 13, 18], "two": [3, 6, 8, 9, 10, 13], "so": [3, 12, 16], "20": [3, 16], "gb": 3, "free": [3, 6, 18], "space": [3, 6, 8, 13], "cp": 3, "r": [3, 12], "virtual": [3, 18], "shell": 3, "sphinx": 3, "html": [3, 6], "_build": 3, "view": [3, 6, 8], "design": [3, 6], "automat": [3, 12, 13], "deploi": 3, "addition": 3, "manual": [3, 8, 12, 13], "trigger": 3, "action": 3, "tab": 3, "here": [3, 5, 6, 16], "": [3, 5, 6, 7, 8, 9, 10, 12, 13, 16], "work": [3, 6, 7, 8, 9, 16, 18], "configur": [3, 7, 9, 12, 13, 17], "specif": [3, 6, 8, 9, 13], "path": [3, 6, 7, 8, 9, 12, 13, 16], "relat": [3, 6, 8], "execut": [3, 9], "possibl": [3, 6, 10], "workflow_dispatch": 3, "pyproject": 3, "toml": 3, "yml": 3, "permiss": 3, "github_token": 3, "allow": [3, 5, 6, 9, 10, 16], "deploy": 3, "page": 3, "read": [3, 6, 8, 12, 13, 16], "access": [3, 5, 8, 12, 13], "content": [3, 7, 13], "id": [3, 6, 8, 13, 16], "token": [3, 13, 16], "concurr": 3, "onli": [3, 5, 6, 8, 9, 10, 12, 13], "one": [3, 5, 6, 8, 9, 10, 12, 13, 14, 16], "prevent": 3, "conflict": 3, "futur": 3, "idea": 3, "queu": 3, "between": [3, 5, 6, 8, 10, 13, 16], "progress": [3, 5, 8, 16], "skip": [3, 18], "group": [3, 13, 16], "cancel": 3, "fals": [3, 5, 6, 7, 8, 9, 10, 13, 16], "divid": 3, "job": [3, 16], "out": [3, 6, 8, 13], "pandoc": 3, "remov": [3, 13, 16], "unnecessari": 3, "download": [3, 9], "raw": [3, 13, 16], "built": 3, "go": 3, "click": 3, "On": [3, 18], "tag": 3, "press": 3, "draft": 3, "choos": [3, 6, 8, 16], "type": [3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16, 18], "name": [3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16, 18], "sure": [3, 16], "v": [3, 16], "prefix": [3, 13, 16], "e": [3, 5, 6, 8, 11, 16, 18], "g": [3, 6, 8, 11, 16], "v0": 3, "1": [3, 5, 6, 8, 9, 10, 13, 16], "confirm": [3, 13], "creation": 3, "note": [3, 13], "edit": [3, 18], "appropri": 3, "auto": [3, 8, 13], "updat": [3, 6, 13], "pr": 3, "publish": 3, "entri": [3, 5, 6, 8, 14, 16], "upload": 3, "pypi": [3, 18], "visit": 3, "org": [3, 9], "processor": [3, 8, 16, 18], "0": [3, 5, 6, 8, 9, 10, 13, 16], "ha": [3, 5, 6, 8, 9, 10, 13, 16], "been": [3, 8, 12], "don": [3, 8], "t": [3, 6, 8, 9, 12, 16], "monitor": [3, 16], "error": [3, 5, 9, 13, 14], "occur": [3, 13, 16], "dure": [3, 6, 13], "understand": 3, "respons": 3, "everi": [3, 16], "5": [3, 5, 6, 8, 9, 10, 16], "prereleas": 3, "increment": [3, 13], "6a0": 3, "6a1": 3, "easi": [5, 8, 9, 12], "api": [5, 8, 12, 16], "bin_datafram": [5, 6, 8], "df": [5, 6, 10, 13], "100": [5, 6, 8, 9, 16], "ax": [5, 6, 8, 10, 12, 16], "none": [5, 6, 7, 8, 10, 11, 12, 13, 14], "rang": [5, 6, 8, 11, 13, 16], "hist_mod": [5, 8, 16], "mode": [5, 6, 8, 12, 13, 16, 18], "fast": [5, 8, 16], "jitter": [5, 8, 10, 16], "pbar": [5, 8, 16], "true": [5, 6, 7, 8, 9, 10, 11, 13, 16], "n_core": [5, 8], "threads_per_work": [5, 8, 16], "4": [5, 6, 8, 9, 12, 16], "threadpool_api": [5, 8, 16], "bla": [5, 8, 16], "return_partit": 5, "kwd": [5, 6, 8, 10, 11, 12, 13], "sourc": [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16, 18], "comput": [5, 8, 10, 16], "n": [5, 6, 8, 13, 16], "histogram": [5, 8, 11, 16], "column": [5, 6, 8, 10, 11, 13, 16], "parallel": [5, 6, 8, 16], "paramet": [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16], "perform": [5, 6, 13], "int": [5, 6, 8, 10, 11, 13], "dict": [5, 6, 7, 8, 9, 11, 12, 13, 14], "sequenc": [5, 6, 8, 10, 11, 12, 13], "np": [5, 6, 8, 10, 11, 12, 13], "ndarrai": [5, 6, 8, 10, 11, 12, 13], "tupl": [5, 6, 8, 11, 13], "option": [5, 6, 7, 8, 10, 11, 12, 13, 14, 16], "definit": [5, 8, 12, 16], "ani": [5, 7, 8, 9, 12, 13, 14, 16], "case": [5, 6, 8, 14], "integ": [5, 6, 8], "describ": [5, 6, 8, 12], "dimens": [5, 6, 8, 10, 12], "well": [5, 6], "contain": [5, 6, 7, 8, 10, 11, 12, 13, 14, 16], "each": [5, 6, 8, 10, 11, 13, 16], "arrai": [5, 6, 8, 12, 13], "center": [5, 6, 8, 16], "dictionari": [5, 6, 7, 8, 9, 11, 12, 13, 14, 16], "kei": [5, 6, 7, 8, 12, 13, 14, 16], "abov": [5, 8, 16], "valu": [5, 6, 7, 8, 10, 11, 12, 13, 16], "last": [5, 6, 8], "take": [5, 7, 8, 9, 10, 13], "prioriti": [5, 8, 13], "over": [5, 6, 7, 8, 13], "argument": [5, 6, 7, 8, 10, 11, 12, 13], "default": [5, 6, 7, 8, 10, 11, 12, 13, 14], "str": [5, 6, 7, 8, 9, 10, 11, 12, 13, 14], "calcul": [5, 6, 8, 13, 16], "order": [5, 6, 7, 8, 12, 13, 16], "result": [5, 6, 8, 13], "axi": [5, 6, 8, 11, 12, 16], "float": [5, 6, 8, 10, 11, 13], "point": [5, 6, 8, 16], "given": [5, 6, 7, 8, 9, 10, 13, 16], "numpi": [5, 6, 8, 12, 13, 16], "histogramdd": 5, "power": [5, 16], "similar": [5, 9, 10, 13], "partit": [5, 8, 10], "combin": [5, 8, 13, 16], "recombin": [5, 16], "lean": [5, 8], "store": [5, 6, 8, 9, 13, 16], "list": [5, 6, 8, 9, 10, 11, 13, 16], "legaci": [5, 8], "union": [5, 6, 7, 8, 10, 12, 13], "appli": [5, 6, 8, 10, 16], "specifi": [5, 6, 8, 9, 10, 13], "amplitud": [5, 6, 8, 10, 16], "normal": [5, 6, 7, 8, 10, 16], "uniform": [5, 6, 8, 10], "nois": [5, 8, 10], "look": [5, 6, 8, 9, 13, 16], "show": [5, 6, 8], "behavior": [5, 9, 14], "string": [5, 7, 12, 13], "warn": [5, 12], "most": [5, 13, 16], "approach": 5, "call": 5, "much": [5, 10], "faster": 5, "bool": [5, 6, 7, 8, 9, 10, 11, 13], "tqdm": [5, 8], "bar": [5, 8, 16], "cpu": [5, 8], "avail": [5, 6, 8, 9, 13], "n_cpu": [5, 8], "limit": [5, 8], "thread": [5, 8, 16], "multiprocess": [5, 8], "spawn": [5, 8], "return": [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16], "hypercub": 5, "where": [5, 6, 7, 8, 9, 13, 16], "correspond": [5, 6, 8, 10, 12, 13, 16], "keyword": [5, 6, 8, 9, 11, 12, 13, 16], "rais": [5, 6, 7, 8, 12, 13, 14], "unimpl": 5, "try": [5, 9, 16], "valueerror": [5, 6, 8, 9, 12, 13], "when": [5, 6, 8, 9, 14], "mismatch": 5, "repres": [5, 8, 12, 13], "xarrai": [5, 8, 12], "object": [5, 6, 8, 9, 13, 14], "xr": [5, 6, 8, 12], "dataarrai": [5, 6, 8, 12], "bin_partit": 5, "part": 5, "return_edg": 5, "skip_test": 5, "pd": [5, 6, 8, 10, 13], "usual": 5, "d": [5, 6, 8, 16], "edg": [5, 8, 11], "turn": 5, "off": [5, 13], "input": [5, 6, 8, 12, 13, 16], "transform": [5, 6, 8], "intend": [5, 16, 18], "intern": 5, "might": [5, 6, 8], "difficult": 5, "attributeerror": [5, 12], "congruent": 5, "keyerror": 5, "along": [5, 6, 8], "present": [5, 6, 7, 8, 9, 13, 14, 16], "2": [5, 6, 8, 10, 12, 13, 16], "element": [5, 6, 8, 12], "returnedg": 5, "otherwis": [5, 6, 10, 12, 14], "hist": [5, 8], "precompil": 5, "numba_bin": 5, "binsearch": 5, "val": [5, 6], "bisect": 5, "index": [5, 6, 10, 13], "search": [5, 6, 7, 13], "find": [5, 6, 8, 16], "highest": [5, 6], "left": 5, "outsid": [5, 8], "numba_histogramdd": 5, "sampl": [5, 6, 16], "behav": [5, 8], "total": 5, "uint32": 5, "wa": [5, 8], "chosen": 5, "becaus": 5, "signific": [5, 13], "improv": 5, "uint64": 5, "larg": 5, "volum": [5, 6], "Be": 5, "awar": 5, "caus": 5, "overflow": 5, "veri": 5, "exceed": 5, "3e9": 5, "count": [5, 11, 13], "never": 5, "happen": 5, "realist": 5, "experi": [5, 16], "size": [5, 6, 10, 13, 16], "shape": [5, 6, 8], "In": [5, 6, 8, 16], "typeerror": [5, 7, 8, 12], "wrong": 5, "runtimeerror": 5, "after": [5, 6, 9, 10], "simplify_binning_argu": 5, "convert": [5, 6, 8, 12, 13, 16], "flexibl": 5, "simpl": 5, "mimic": 5, "bin_edges_to_bin_cent": 5, "bin_edg": 5, "1d": [5, 6, 11], "bin_cent": 5, "bin_centers_to_bin_edg": 5, "distort": [6, 8, 16], "mostli": [6, 13, 16], "port": [6, 13], "mpe": [6, 13], "kit": [6, 13], "momentumcorrector": [6, 8], "bin_rang": 6, "rotsym": 6, "6": [6, 8, 16], "hypervolum": 6, "rotat": [6, 8, 16], "symmetri": [6, 8, 16], "properti": [6, 8, 9, 13, 14], "detect": [6, 8, 13], "symmetr": 6, "self": [6, 8], "deriv": 6, "exist": [6, 7, 8, 9, 13, 14], "vert": 6, "symscor": 6, "score": 6, "load_data": 6, "load": [6, 7, 8, 9, 12, 13, 16], "2d": [6, 10], "3d": 6, "either": [6, 8, 18], "need": [6, 8, 9, 12, 16], "thei": [6, 7, 8, 16], "determin": [6, 8, 13], "coord": [6, 12], "fit": 6, "select_slic": 6, "plane": [6, 8], "width": [6, 8, 16], "interact": [6, 8], "panel": [6, 8], "hyper": 6, "slice": [6, 8, 16], "initi": [6, 8, 10, 13, 16], "slider": [6, 8], "imag": [6, 8], "directli": [6, 8, 16], "selector": [6, 13], "extract": [6, 8, 9, 13, 16], "construct": [6, 13], "stop": [6, 9], "sum": 6, "them": [6, 8, 9, 14, 16], "particular": 6, "alreadi": [6, 9, 14], "add_featur": 6, "direct": [6, 8, 16], "ccw": 6, "landmark": 6, "possibli": [6, 7], "peak": [6, 8, 16], "Its": [6, 8], "equal": [6, 16], "symtyp": 6, "doe": [6, 9, 12, 13], "match": 6, "feature_extract": [6, 8], "feature_typ": 6, "current": [6, 7, 8, 9, 10, 13, 16], "circular": 6, "reorder": 6, "cw": 6, "extra": [6, 8], "pointop": 6, "peakdetect2d": 6, "notimplementederror": [6, 12], "undefin": [6, 13], "feature_select": [6, 8], "include_cent": [6, 8, 16], "centroid": 6, "registr": 6, "omit": [6, 8], "fill": [6, 10, 13, 16], "zero": 6, "valid": [6, 8, 13], "found": [6, 7, 8, 12, 13], "ge": 6, "coordin": [6, 8, 12, 16], "calc_geometric_dist": 6, "geometr": 6, "distanc": [6, 8, 16], "involv": 6, "vertic": [6, 11], "vertex": 6, "nearest": 6, "neighbor": 6, "calc_symmetry_scor": 6, "quantiti": 6, "spline_warp_estim": [6, 8], "use_cent": [6, 8, 16], "fixed_cent": 6, "interp_ord": 6, "ascal": 6, "verbos": [6, 7, 8], "estim": 6, "spline": [6, 8, 16], "deform": [6, 8], "field": [6, 8, 16], "thin": 6, "plate": 6, "interpol": [6, 8, 10], "scipi": [6, 8], "ndimag": 6, "map_coordin": 6, "scale": [6, 8, 10, 16], "rel": 6, "orthogon": 6, "orthorhomb": 6, "system": [6, 7, 13, 16], "locat": [6, 9, 13, 16], "princip": 6, "x": [6, 8, 10, 12, 16], "y": [6, 8, 10, 12, 16], "brillouin": 6, "zone": 6, "expect": 6, "report": [6, 7, 13, 16], "posit": [6, 8, 16], "row": [6, 8, 10], "pouter_ord": 6, "target": [6, 13], "empti": [6, 7, 13], "rotvertexgener": 6, "new_cent": 6, "lmkcenter": 6, "col": [6, 8, 10], "targcent": 6, "apply_correct": [6, 8], "dfield": 6, "stack": [6, 8, 12], "rdeform_field": [6, 8], "cdeformfield": 6, "reset_deform": 6, "reset": [6, 8, 13], "coordtyp": 6, "cartesian": 6, "update_deform": 6, "rdeform": 6, "cdeform": 6, "coordinate_transform": 6, "transform_typ": 6, "keep": [6, 7, 8, 14], "mapkwd": 6, "pixel": [6, 8, 16], "wise": 6, "mean": [6, 8, 10, 16], "translat": [6, 8], "rotation_auto": 6, "scaling_auto": 6, "homographi": 6, "miss": [6, 7, 8, 13], "addit": [6, 7, 8, 10, 11, 12, 13, 16], "sym": 6, "pose_adjust": [6, 8], "adjust": [6, 8], "first": [6, 7, 8, 13, 16], "next": [6, 8], "around": [6, 8, 16], "256": [6, 16], "xtran": [6, 8], "ytran": [6, 8], "calc_inverse_dfield": 6, "invers": [6, 8], "lower": [6, 10], "cmap": 6, "terrain_r": 6, "figsiz": 6, "annot": 6, "backend": [6, 8, 11], "matplotlib": [6, 8, 11], "imkwd": 6, "scatterkwd": 6, "cross": 6, "crosshair": 6, "crosshair_radii": 6, "50": [6, 16], "150": 6, "crosshair_thick": 6, "displai": [6, 8, 16], "plot": [6, 8, 11], "figur": [6, 11], "upper": 6, "colormap": 6, "visual": [6, 16], "static": [6, 9, 16], "render": 6, "bokeh": [6, 8, 11], "pyplot": [6, 8], "imshow": 6, "scatter": 6, "horizont": [6, 11], "line": 6, "pcent": 6, "circl": 6, "radii": 6, "activ": [6, 18], "thick": 6, "procedur": 6, "select_k_rang": 6, "point_a": [6, 8], "point_b": [6, 8], "k_distanc": [6, 8], "k_coord_a": [6, 8], "k_coord_b": [6, 8], "equiscal": [6, 8], "k": [6, 8, 16], "altern": [6, 7, 8, 16], "both": [6, 8, 9, 13, 14, 16], "detail": [6, 7, 8], "center_pixel": [6, 8, 16], "known": 6, "adopt": 6, "situat": 6, "close": 6, "separ": [6, 13], "suffici": 6, "absolut": [6, 8, 16], "column_index": 6, "row_index": 6, "slice_correct": 6, "extent": 6, "grid": [6, 8, 11, 16], "mesh": 6, "pcolormesh": 6, "coeff": 6, "coeffici": 6, "x_center": [6, 16], "y_center": [6, 16], "cstart": [6, 16], "rstart": [6, 16], "detector": [6, 13, 16], "cstep": [6, 16], "rstep": [6, 16], "x_column": [6, 10, 16], "y_column": [6, 10, 16], "new_x_column": 6, "new_y_column": 6, "replac": [6, 8, 13], "label": 6, "corrected_x_column": [6, 16], "corrected_y_column": [6, 16], "cdeform_field": [6, 8], "forward": [6, 10, 13, 16], "apply_dfield": 6, "ad": [6, 7, 10, 12, 13], "gather_correction_metadata": 6, "meta": [6, 13, 14], "append_k_axi": 6, "append": [6, 8, 14], "kx": [6, 8, 16], "ky": [6, 8, 16], "whichev": 6, "destin": [6, 8, 10, 13], "kx_column": [6, 16], "ky_column": [6, 16], "gather_calibration_metadata": 6, "taken": 6, "cm2palett": 6, "cmap_nam": 6, "certain": 6, "cm": 6, "palett": 6, "color": 6, "hex": 6, "represent": [6, 14], "dictmerg": 6, "main_dict": 6, "other_entri": 6, "other": [6, 8, 10, 13, 16], "composit": 6, "dictionar": 6, "detector_coordinates_2_k_coordin": 6, "r_det": 6, "c_det": 6, "r_start": 6, "c_start": 6, "r_center": 6, "c_center": 6, "r_convers": 6, "c_convers": 6, "r_step": 6, "c_step": 6, "convers": [6, 13], "kr": 6, "kc": 6, "factor": [6, 16], "detector_rang": [6, 16], "applic": [6, 8, 10, 16], "displac": 6, "matrix": 6, "generate_inverse_dfield": 6, "griddata": 6, "whole": [6, 8], "load_dfield": 6, "energycalibr": [6, 8], "bias": [6, 8], "trace": [6, 8, 16], "tof": [6, 8, 16], "electron": [6, 8, 13], "bind": [6, 8], "For": [6, 8, 10, 13, 16], "instanc": [6, 8, 9, 11, 13, 16], "bin_data": 6, "bia": [6, 8, 16], "voltag": [6, 8, 16], "ntrace": 6, "nrang": 6, "multipl": [6, 10, 11], "dup": 6, "duplic": [6, 14], "per": [6, 8, 13, 16], "Not": [6, 9, 16], "overwritten": [6, 16], "data_fil": [6, 8], "bias_kei": [6, 8, 16], "tof_column": [6, 8, 13, 16], "hdf5": [6, 8, 12, 13, 16], "smooth": [6, 8, 16], "span": [6, 8], "7": [6, 16], "spectra": 6, "signal": [6, 8], "loess": [6, 8], "savgol_filt": [6, 8], "adjust_rang": 6, "ref_id": [6, 8], "peak_window": [6, 8, 16], "tool": [6, 8, 13, 16], "equival": 6, "among": 6, "within": [6, 8, 13], "algorithm": [6, 8, 16], "dispers": 6, "curv": [6, 8, 16], "traces_norm": 6, "area": 6, "align": [6, 8], "find_correspond": 6, "add_rang": 6, "infer_oth": [6, 8], "infer": [6, 12], "warp": [6, 8], "featrang": 6, "lmfit": [6, 8, 16], "energy_scal": [6, 8, 16], "kinet": [6, 8, 16], "map": [6, 10, 13], "flight": [6, 8, 13, 16], "optim": 6, "form": [6, 8, 10], "lstsq": [6, 8], "lsqr": [6, 8], "polynomi": [6, 8], "increas": [6, 8], "decreas": [6, 8], "print": [6, 8, 9, 13], "poly_energy_calibr": 6, "fit_energy_calibr": 6, "invalid": 6, "seg": 6, "show_legend": 6, "linekwd": 6, "linesegkwd": 6, "legkwd": [6, 8, 11], "segment": 6, "highlight": 6, "legend": [6, 8, 11], "xaxi": 6, "titl": 6, "legend_loc": 6, "shift": [6, 8], "append_energy_axi": [6, 8], "energy_column": [6, 16], "overrid": [6, 8], "calib_typ": 6, "append_tof_ns_axi": [6, 8], "tof_ns_column": [6, 8, 16], "nanosecond": [6, 8, 16], "binwidth": 6, "tof_binwidth": [6, 16], "tof_bin": [6, 16], "adjust_energy_correct": [6, 8], "correction_typ": [6, 8, 16], "top": 6, "graph": [6, 16], "cube": 6, "spheric": [6, 8], "lorentzian": [6, 8, 16], "gaussian": [6, 8, 16], "lorentzian_asymmetr": [6, 8], "term": 6, "tog": 6, "x_width": [6, 16], "integr": [6, 16], "y_width": [6, 16], "tof_fermi": [6, 16], "fermi": 6, "level": [6, 9, 13], "tof_width": [6, 16], "color_clip": [6, 16], "drift": 6, "gamma": [6, 16], "linewidth": 6, "lorentz": 6, "profil": 6, "sigma": [6, 16], "standard": [6, 12], "deviat": 6, "gamma2": 6, "asymmetr": 6, "amplitude2": 6, "apply_energy_correct": [6, 8], "new_tof_column": 6, "corrected_tof_column": [6, 16], "align_dld_sector": [6, 8], "sector_id_column": [6, 13, 16], "sector_delai": [6, 8, 16], "section": [6, 16], "sector": [6, 8, 16], "add_offset": 6, "offset": [6, 10, 16], "constant": [6, 8], "weight": [6, 8, 10], "preserve_mean": [6, 8, 10], "reduct": [6, 8, 10], "dfop": [6, 10], "apply_offset_from_column": 6, "flip": [6, 8, 16], "sign": [6, 8, 10, 16], "subtract": [6, 8, 10], "seri": [6, 8, 13], "support": [6, 7, 8, 10, 13], "extract_bia": 6, "filenam": [6, 8, 9, 13, 16], "correction_funct": 6, "model": 6, "One": 6, "distribut": [6, 10, 18], "diamet": [6, 16], "normspec": 6, "spec": [6, 13], "assembl": 6, "maximum": [6, 8], "sig_stil": 6, "sig_mov": 6, "fastdtw": [6, 16], "range_convert": 6, "xrng": 6, "pathcorr": 6, "pairwis": 6, "obtain": [6, 13, 16], "boundari": 6, "id_1_trace_1": 6, "id_1_trace_2": 6, "id_2_trace_1": 6, "id_2_trace_2": 6, "accord": 6, "find_nearest": 6, "narrai": 6, "closest": 6, "interest": [6, 13], "peaksearch": 6, "pkwindow": 6, "region": 6, "lowerbound1": 6, "upperbound1": 6, "lowerbound2": 6, "upperbound2": 6, "window": [6, 7, 16, 18], "amount": [6, 8], "lookahead": 6, "peakdetect1d": 6, "custom": 6, "y_axi": 6, "x_axi": 6, "200": [6, 16], "delta": 6, "maxima": 6, "minima": 6, "discov": 6, "surround": 6, "larger": 6, "respect": [6, 13, 16], "matlab": 6, "script": [6, 18], "billauer": 6, "co": 6, "il": 6, "peakdet": 6, "whose": 6, "ahead": 6, "candid": 6, "actual": 6, "period": 6, "f": [6, 16], "25": [6, 16], "good": [6, 8], "minimum": [6, 8], "mai": 6, "consid": [6, 12], "hinder": 6, "pick": 6, "toward": 6, "rmsnois": 6, "neg": 6, "po": 6, "ref_energi": [6, 8], "nonlinear": 6, "least": [6, 13], "squar": 6, "spectral": 6, "edc": 6, "done": [6, 18], "t0": [6, 8, 16], "associ": [6, 13], "ev": [6, 16], "output": [6, 11, 12, 13], "constrain": 6, "1e": 6, "e0": [6, 16], "min": 6, "aug": 6, "solv": 6, "vector": 6, "equat": 6, "differenti": 6, "relationship": 6, "written": 6, "sum_n": 6, "a_n": 6, "augment": [6, 13], "doubl": 6, "etc": [6, 7, 13, 16, 18], "tmat": 6, "ta": 6, "bvec": 6, "tof2ev": 6, "tof_dist": 6, "time_offset": 6, "energy_offset": 6, "express": [6, 13], "volt": 6, "formula": 6, "meter": 6, "tof2evpoli": 6, "poly_a": 6, "approxim": [6, 8, 16], "tof2n": 6, "map_partit": 6, "second": [6, 8, 13, 16], "delaycalibr": [6, 8], "pump": [6, 16], "probe": [6, 16], "append_delay_axi": [6, 8], "adc_column": [6, 16], "delay_column": [6, 16], "adc_rang": [6, 16], "delay_rang": [6, 8], "time0": [6, 16], "delay_range_mm": 6, "datafil": [6, 8], "p1_kei": [6, 16], "p2_kei": [6, 16], "t0_kei": [6, 16], "analog": [6, 16], "digit": [6, 16], "adc": [6, 16], "scan": [6, 8, 13], "p": [6, 16], "overlap": [6, 16], "stage": [6, 16], "mm": 6, "flip_delay_axi": [6, 8], "extract_delay_stage_paramet": 6, "p1_valu": 6, "p2_valu": 6, "t0_valu": 6, "mm_to_p": 6, "delay_mm": 6, "time0_mm": 6, "picosecond": [6, 8], "librari": [7, 8], "yaml": [7, 8, 16], "json": [7, 13, 16], "parse_config": 7, "folder_config": [7, 16], "user_config": [7, 16], "system_config": [7, 16], "default_config": [7, 16], "home": [7, 9, 16], "runner": [7, 9], "complet": [7, 9, 12, 13], "hierarch": [7, 16], "item": 7, "These": [7, 9, 16], "place": [7, 16], "folder": [7, 8, 9, 13, 16], "prefer": 7, "sed_config": [7, 8, 16], "wide": 7, "linux": [7, 16, 18], "allusersprofil": [7, 16], "package_dir": 7, "neither": [7, 13], "nor": [7, 13], "filenotfounderror": [7, 13], "load_config": 7, "config_path": 7, "cannot": [7, 13], "save_config": 7, "config_dict": 7, "overwrit": [7, 8, 13, 14, 16], "save": [7, 8, 12, 13, 16], "fulli": [7, 9], "complete_dictionari": 7, "base_dictionari": 7, "iter": [7, 10, 13, 16], "sedprocessor": 8, "collect_metadata": [8, 13], "wrapper": 8, "flow": 8, "extern": [8, 13], "ddf": [8, 13], "identifi": [8, 13], "reader": [8, 12, 13, 16], "accessor": 8, "underli": 8, "timed_datafram": 8, "metahandl": [8, 13, 14], "add_attribut": 8, "under": [8, 14], "getter": 8, "normalization_histogram": 8, "cpy": 8, "mirror": [8, 13, 16], "network": [8, 13], "drive": [8, 13], "storag": [8, 16], "use_copy_tool": [8, 16], "tabular": 8, "accept": 8, "anyth": 8, "interpret": 8, "filter_column": 8, "min_valu": 8, "inf": [8, 10], "max_valu": 8, "filter": [8, 10], "bin_and_load_momentum_calibr": 8, "df_partit": 8, "1st": 8, "momentum": [8, 13], "corrector": 8, "pre_bin": 8, "define_featur": 8, "rotation_symmetri": [8, 16], "auto_detect": 8, "gui": 8, "generate_splinewarp": 8, "restor": 8, "splinewarp": 8, "save_splinewarp": 8, "use_correct": 8, "affin": 8, "save_transform": 8, "pose": 8, "apply_momentum_correct": 8, "preview": 8, "inv_dfield": 8, "calibrate_momentum_ax": 8, "high": [8, 16], "its": [8, 13], "bz": [8, 16], "save_momentum_calibr": 8, "apply_momentum_calibr": 8, "arg": 8, "energi": [8, 12, 16], "yet": [8, 16], "save_energy_correct": 8, "load_bias_seri": 8, "binned_data": 8, "bias_column": [8, 16], "normalize_span": [8, 16], "normalize_ord": [8, 16], "find_bias_peak": 8, "radiu": [8, 16], "indic": 8, "tri": [8, 12], "same": [8, 10, 14, 16], "fast_dtw": 8, "too": 8, "qualit": 8, "ideal": 8, "middl": 8, "narrow": 8, "fastdtw_radiu": [8, 16], "monoton": 8, "calibrate_energy_axi": 8, "3rd": 8, "calibration_method": [8, 16], "save_energy_calibr": 8, "add_energy_offset": 8, "save_energy_offset": 8, "channel": [8, 12, 13, 16], "tof_step_to_n": 8, "hextof": [8, 13], "endstat": 8, "delai": [8, 13, 16], "calibrate_delay_axi": 8, "save_delay_calibr": 8, "add_delay_offset": 8, "revers": 8, "save_delay_offset": 8, "save_workflow_param": 8, "add_jitt": 8, "amp": [8, 10], "onto": 8, "jitter_col": [8, 16], "interv": [8, 10, 13], "jitter_amp": [8, 16], "apply_jitt": [8, 10], "add_time_stamped_data": [8, 10], "dest_column": [8, 10], "time_stamp": [8, 10, 13], "archiver_channel": [8, 13], "timestamp": [8, 10, 13, 16], "pair": [8, 10, 12], "stamp": [8, 10, 13, 16], "fetch": [8, 9, 13], "epic": [8, 13, 16], "archiv": [8, 13, 16], "retriev": [8, 13, 16], "normalize_to_acquisition_tim": 8, "NOT": 8, "acquisit": [8, 13], "num_cor": [8, 16], "openmp": 8, "threadpool_limit": 8, "lower_bound": [8, 10], "upper_bound": [8, 10], "remain": [8, 13], "unmodifi": 8, "asserterror": 8, "rise": 8, "get_normalization_histogram": 8, "use_time_stamp": 8, "instead": [8, 12], "rather": 8, "than": [8, 12], "time_stamp_alia": [8, 13, 16], "unit": [8, 16], "view_event_histogram": 8, "dfpid": 8, "ncol": [8, 11], "histkwd": [8, 11], "individu": [8, 13, 16], "substitu": 8, "grid_histogram": [8, 11], "faddr": [8, 12], "extens": [8, 13], "tiff": [8, 12], "tif": 8, "h5": [8, 13, 16], "nx": 8, "writer": 8, "alias_dict": [8, 12, 13], "alias": [8, 13, 16], "w": [8, 12], "pynxtool": [8, 12, 16], "input_fil": [8, 12, 16], "eln_data": 8, "lab": [8, 18], "come": 9, "abil": 9, "url": [9, 13, 16], "By": [9, 10], "wse2": 9, "tas2": 9, "gd_w110": 9, "extend": 9, "import": 9, "o": 9, "just": 9, "anoth": 9, "root_dir": 9, "interrupt": 9, "restart": 9, "continu": 9, "remove_zip": 9, "user_path": 9, "152m": 9, "73g": 9, "00": 9, "02": 9, "01": [9, 16], "24": 9, "71": 9, "3mb": 9, "09": 9, "54": [9, 16], "delet": [9, 10, 13], "zip": 9, "use_exist": 9, "new_dataset": 9, "Or": 9, "re": [9, 13], "some": [9, 13], "rerun": 9, "command": 9, "73gb": 9, "12": [9, 16], "6mb": 9, "113": [9, 16], "41": 9, "43": 9, "successfulli": 9, "existing_data_path": 9, "dir": 9, "subdir": 9, "scan049_1": 9, "energycal_2019_01_08": 9, "rearrange_fil": 9, "subfold": 9, "put": 9, "example_dset_nam": 9, "example_dset_info": 9, "real": 9, "example_subdir": 9, "data_nam": 9, "info": 9, "assert": 9, "likewis": 9, "doesn": 9, "now": [9, 13, 18], "let": 9, "28": [9, 16], "10file": 9, "rearrang": 9, "696": 9, "11file": 9, "movement": 9, "path_to_remov": 9, "zenodo": 9, "record": 9, "6369728": 9, "10658470": 9, "single_event_data": 9, "analysis_data": 9, "calibration_data": 9, "10160182": 9, "scan0121_1": 9, "energycal_2020_07_20": 9, "web": 9, "manag": 9, "json_path": 9, "load_datasets_dict": 9, "kwarg": 9, "ignore_zip": 9, "ignor": [9, 12, 13], "cols_jitt": 10, "jitter_typ": 10, "stdev": 10, "drop_column": 10, "column_nam": 10, "drop": [10, 13], "apply_filt": 10, "bound": 10, "consecut": 10, "time_stamp_column": 10, "map_columns_2d": 10, "map_2d": 10, "simultan": 10, "callabl": 10, "forward_fill_lazi": 10, "max": 10, "compute_length": 10, "spars": 10, "those": [10, 18], "mani": 10, "nan": [10, 13], "entir": [10, 13], "consist": [10, 16], "twice": 10, "enough": 10, "previou": [10, 14], "smallest": 10, "length": [10, 16], "backward_fill_lazi": 10, "backward": 10, "help": [10, 18], "often": 10, "care": 10, "assumpt": 10, "being": 10, "past": 10, "offset_by_other_column": 10, "target_column": 10, "offset_column": 10, "inplac": 10, "renam": 10, "suffix": 10, "_offset": 10, "plot_single_hist": 11, "histval": 11, "tooltip": 11, "text": 11, "quad": 11, "pbk": 11, "dct": 11, "rv": 11, "rvbin": 11, "rvrang": 11, "random": 11, "load_h5": 12, "to_h5": 12, "subfunct": 12, "load_tiff": 12, "dim": 12, "attr": 12, "retain": 12, "tzcyx": 12, "to_tiff": 12, "compat": 12, "imagej": 12, "axis_dict": 12, "therefor": 12, "best": 12, "posi": 12, "posx": 12, "c": [12, 16], "full": [12, 13], "z": 12, "sort": [12, 13], "guess": 12, "to_nexu": 12, "_attr": 12, "dataconvert": 12, "loader_interfac": 13, "get_load": 13, "loader_nam": 13, "helper": 13, "get_names_of_all_load": 13, "popul": 13, "abc": 13, "py": 13, "becom": 13, "meta_handl": 13, "supported_file_typ": 13, "read_datafram": 13, "ftype": 13, "preced": 13, "parquet": [13, 16], "csv": 13, "get_files_from_run_id": 13, "run_id": 13, "get_count_r": 13, "fid": 13, "rate": 13, "countrat": 13, "get_elapsed_tim": 13, "elaps": 13, "alia": 13, "author": 13, "l": 13, "rettig": 13, "variou": [13, 16], "parser": 13, "hdf5_to_datafram": 13, "group_nam": [13, 16], "ms_markers_group": [13, 16], "msmarker": [13, 16], "first_event_time_stamp_kei": [13, 16], "firsteventtimestamp": [13, 16], "stream": [13, 16], "groupnam": 13, "hdf5_to_timed_datafram": 13, "evenli": 13, "get_groups_and_alias": 13, "h5file": 13, "search_pattern": 13, "alias_kei": 13, "h5py": 13, "pattern": 13, "pars": [13, 16], "hdf5_to_arrai": 13, "data_typ": 13, "float32": 13, "hdf5_to_timed_arrai": 13, "ms_marker": 13, "get_attribut": 13, "h5group": 13, "decod": 13, "millisecond": [13, 16], "marker": 13, "hz": 13, "wave": 13, "get_archiver_data": 13, "archiver_url": [13, 16], "ts_from": 13, "ts_to": 13, "meti": 13, "1000": [13, 16], "fhi": 13, "berlin": 13, "hdf5_groupnam": [13, 16], "hdf5_alias": [13, 16], "base_fold": 13, "get_start_and_end_tim": 13, "gather_metadata": 13, "flash": 13, "wesp": 13, "instrument": [13, 16], "structur": [13, 16], "buffer": 13, "amalgam": 13, "across": 13, "reread": 13, "back": 13, "multiindex": 13, "panda": 13, "dataformat": 13, "macro": 13, "microbunch": 13, "alongsid": 13, "inherit": 13, "initialize_path": 13, "daq": [13, 16], "available_channel": 13, "exclud": 13, "pulseid": [13, 16], "get_channel": 13, "desir": 13, "per_puls": [13, 16], "per_electron": [13, 16], "per_train": [13, 16], "multi_index": 13, "reset_multi_index": 13, "puls": [13, 16], "create_multi_index_per_electron": 13, "h5_file": 13, "reli": 13, "macrobunch": 13, "trainid": 13, "electronid": 13, "create_multi_index_per_puls": 13, "train_id": 13, "np_arrai": 13, "train": 13, "create_numpy_array_per_channel": 13, "create_dataframe_per_electron": 13, "explod": 13, "meaningless": 13, "create_dataframe_per_puls": 13, "channel_dict": 13, "auxiliari": [13, 16], "repeat": 13, "499": 13, "compar": [13, 16], "multicolumn": 13, "create_dataframe_per_train": 13, "create_dataframe_per_channel": 13, "concatenate_channel": 13, "concaten": 13, "create_dataframe_per_fil": 13, "file_path": 13, "opposit": 13, "create_buffer_fil": 13, "h5_path": 13, "parquet_path": 13, "except": [13, 14], "buffer_file_handl": 13, "data_parquet_dir": [13, 16], "force_recr": 13, "forc": 13, "recreat": 13, "three": 13, "schema": 13, "fail": 13, "parquet_handl": 13, "load_parquet": 13, "save_parquet": 13, "distinguish": 13, "multidetector": 13, "dd": 13, "dataframe_electron": 13, "dataframe_puls": 13, "parse_metadata": 13, "scicat_token": [13, 16], "metadataretriev": 13, "scicat": [13, 16], "data_raw_dir": [13, 16], "beamtim": [13, 16], "metadata_config": 13, "get_metadata": 13, "beamtime_id": [13, 16], "sxp": 13, "microscop": 13, "ident": 13, "dummi": 13, "gather_fil": 13, "f_start": 13, "f_end": 13, "f_step": 13, "file_sort": 13, "glob": 13, "parse_h5_kei": 13, "_hl": 13, "param": 13, "while": 13, "split_channel_bitwis": 13, "input_column": 13, "output_column": 13, "bit_mask": 13, "split": 13, "bitwis": 13, "bit": [13, 16], "mask": 13, "split_dld_time_from_sector_id": 13, "sector_id_reserved_bit": [13, 16], "sectorid": 13, "encod": [13, 16], "dldsectorid": [13, 16], "dldtimestep": [13, 16], "reserv": [13, 16], "mirrorutil": 13, "transpar": 13, "tree": 13, "speed": 13, "tremend": 13, "copytool": 13, "dest": 13, "force_copi": 13, "compute_kwd": 13, "oserror": 13, "disk": 13, "sdir": 13, "cleanup_oldest_scan": 13, "old": 13, "oldest": 13, "ctime": 13, "queri": 13, "ag": 13, "get_target_dir": 13, "gid": [13, 16], "root": [13, 16], "unix": 13, "wether": 13, "notadirectoryerror": 13, "insid": 13, "mymakedir": 13, "mycopi": 13, "fir": 13, "ownership": 13, "handler": 14, "manipul": 14, "nice": 14, "rtype": 14, "duplicate_polici": 14, "control": 14, "duplicateentryerror": 14, "recurs": 14, "trail": 14, "attempt": 14, "explan": 14, "mechan": 16, "manner": 16, "subsequ": 16, "modif": 16, "administr": 16, "setup": 16, "ref": 16, "example_config": 16, "ship": 16, "typic": 16, "disabl": 16, "t_n": 16, "samplebia": 16, "xm": 16, "ym": 16, "tm": 16, "125e": 16, "adc_bin": 16, "half": 16, "jitter_column": 16, "timed_dataframe_unit_tim": 16, "001": 16, "100000": 16, "150000": 16, "cutoff": 16, "132250": 16, "600": 16, "intens": 16, "300": 16, "512": 16, "unbin": 16, "1792": 16, "132000": 16, "138000": 16, "2048": 16, "background": 16, "fwhm": 16, "sigma_radiu": 16, "variat": 16, "1900": 16, "25600": 16, "flip_time_axi": 16, "multithread": 16, "worker": 16, "80": 16, "1800": 16, "copy_tool_sourc": 16, "copy_tool_dest": 16, "localdatastor": 16, "copy_tool_kwd": 16, "ntask": 16, "1001": 16, "stream_0": 16, "stream_1": 16, "stream_2": 16, "stream_4": 16, "assign": 16, "eventid": 16, "tof_voltag": 16, "extractor_voltag": 16, "extractor_curr": 16, "cryo_temperatur": 16, "sample_temperatur": 16, "dld_time": 16, "128000": 16, "ktof": 16, "len": 16, "730": 16, "920": 16, "700": 16, "radial": 16, "3000": 16, "058206295066418": 16, "684410678887588e": 16, "07": 16, "30": 16, "440035779171833": 16, "136000": 16, "kx_scale": 16, "010729535670610963": 16, "ky_scal": 16, "feature_point": 16, "203": 16, "341": 16, "96": 16, "299": 16, "16": 16, "345": 16, "32": 16, "350": 16, "243": 16, "70": 16, "304": 16, "38": 16, "149": 16, "88": 16, "199": 16, "52": 16, "152": 16, "48": 16, "154": 16, "242": 16, "27": 16, "248": 16, "29": 16, "62": 16, "even": 16, "delaystag": 16, "p1": 16, "p2": 16, "32000": 16, "engin": 16, "aa0": 16, "mpg": 16, "de": 16, "17668": 16, "getdata": 16, "pv": 16, "epics_pv": 16, "extr": 16, "carv": 16, "temp_rbv": 16, "xgs600": 16, "pressureac": 16, "p_rd": 16, "udld": 16, "apertur": 16, "m1": 16, "rbv": 16, "m2": 16, "m3": 16, "trx": 16, "trz": 16, "tht": 16, "phi": 16, "omg": 16, "motor": 16, "fa_in_channel": 16, "hor": 16, "fa_hor_channel": 16, "contrast": 16, "ca_in_channel": 16, "aperture_config": 16, "2018": 16, "23t19": 16, "35": 16, "15": 16, "fa_siz": 16, "750": 16, "75": 16, "1500": 16, "500": 16, "ca_siz": 16, "2020": 16, "lens_mode_config": 16, "6kv_kmodem4": 16, "0_20vtof_v3": 16, "sav": 16, "6000": 16, "uca": 16, "1200": 16, "ufa": 16, "z1": 16, "2452": 16, "z2": 16, "1489": 16, "420": 16, "2494": 16, "489": 16, "228": 16, "05": 16, "82": 16, "232": 16, "h": 16, "36": 16, "mcpfront": 16, "0_30vtof_453ns_focu": 16, "403": 16, "2500": 16, "422": 16, "208": 16, "49": 16, "68": 16, "735": 16, "44": 16, "nxmpe": 16, "hand": 16, "nxmpes_config": 16, "took": 16, "pg2": 16, "11019101": 16, "year": 16, "2023": 16, "beamtimeid": 16, "intermedi": 16, "sinc": 16, "maxwel": 16, "probabl": 16, "lot": 16, "our": 16, "dispos": 16, "fl1user3": 16, "ubid_offset": 16, "forward_fill_iter": 16, "split_sector_id_from_dld_tim": 16, "dldposx": 16, "dldposi": 16, "dldtime": 16, "0576131995767355e": 16, "corrected_delay_column": 16, "pumpprobetim": 16, "extractorvoltag": 16, "extractorcurr": 16, "cryotemperatur": 16, "sampletemperatur": 16, "channelalia": 16, "uncategoris": 16, "diag": 16, "timinginfo": 16, "time1": 16, "bunch_first_index": 16, "exp": 16, "dld1": 16, "special": 16, "further": 16, "dldaux": 16, "dldauxchannel": 16, "tofvoltag": 16, "dldtimebins": 16, "pulser": 16, "approx": 16, "35000": 16, "33000": 16, "pulsersignadc": 16, "fl1": 16, "pg": 16, "sis8300": 16, "100mhz": 16, "ch6": 16, "td": 16, "monochromat": 16, "beam": 16, "quasi": 16, "better": 16, "still": 16, "monochromatorphotonenergi": 16, "monochrom": 16, "photon": 16, "gmd": 16, "gmdbda": 16, "averag": 16, "bda": 16, "arriv": 16, "vital": 16, "compens": 16, "sase": 16, "fluctuat": 16, "dbc2": 16, "bam": 16, "sdiag": 16, "fl0": 16, "arrival_tim": 16, "sa1": 16, "comp": 16, "zraw": 16, "sync": 16, "laser": 16, "lock": 16, "f1": 16, "osc": 16, "fmc0": 16, "md22": 16, "encoder_posit": 16, "rd": 16, "dgroup": 16, "stream_name_prefix": 16, "pbd": 16, "gmd_data_gmd_data": 16, "pbd2": 16, "fl2photdiag_pbd2_gmd_data": 16, "fl1user1": 16, "flash1_user1_stream_2": 16, "fl1user2": 16, "flash1_user2_stream_2": 16, "flash1_user3_stream_2": 16, "fl2user1": 16, "flash2_user1_stream_2": 16, "fl2user2": 16, "flash2_user2_stream_2": 16, "beamtime_dir": 16, "asap3": 16, "gpf": 16, "scicat_url": 16, "shall": 16, "final": 16, "soon": 16, "nxmpes_config_hextof_light": 16, "venv": 18, "pyenv": 18, "conda": 18, "maco": 18, "jupyt": 18, "kernel": 18, "ipykernel": 18, "sed_kernel": 18, "feel": 18, "submit": 18}, "objects": {"sed": [[5, 0, 0, "-", "binning"], [8, 0, 0, "-", "core"], [11, 0, 0, "-", "diagnostics"], [12, 0, 0, "-", "io"]], "sed.binning": [[5, 1, 1, "", "bin_dataframe"], [5, 1, 1, "", "bin_partition"], [5, 0, 0, "-", "numba_bin"], [5, 0, 0, "-", "utils"]], "sed.binning.numba_bin": [[5, 1, 1, "", "binsearch"], [5, 1, 1, "", "numba_histogramdd"]], "sed.binning.utils": [[5, 1, 1, "", "bin_centers_to_bin_edges"], [5, 1, 1, "", "bin_edges_to_bin_centers"], [5, 1, 1, "", "simplify_binning_arguments"]], "sed.calibrator": [[6, 0, 0, "-", "delay"], [6, 0, 0, "-", "energy"], [6, 0, 0, "-", "momentum"]], "sed.calibrator.delay": [[6, 2, 1, "", "DelayCalibrator"], [6, 1, 1, "", "extract_delay_stage_parameters"], [6, 1, 1, "", "mm_to_ps"]], "sed.calibrator.delay.DelayCalibrator": [[6, 3, 1, "", "add_offsets"], [6, 3, 1, "", "append_delay_axis"]], "sed.calibrator.energy": [[6, 2, 1, "", "EnergyCalibrator"], [6, 1, 1, "", "correction_function"], [6, 1, 1, "", "extract_bias"], [6, 1, 1, "", "find_correspondence"], [6, 1, 1, "", "find_nearest"], [6, 1, 1, "", "fit_energy_calibration"], [6, 1, 1, "", "normspec"], [6, 1, 1, "", "peakdetect1d"], [6, 1, 1, "", "peaksearch"], [6, 1, 1, "", "poly_energy_calibration"], [6, 1, 1, "", "range_convert"], [6, 1, 1, "", "tof2ev"], [6, 1, 1, "", "tof2evpoly"], [6, 1, 1, "", "tof2ns"]], "sed.calibrator.energy.EnergyCalibrator": [[6, 3, 1, "", "add_offsets"], [6, 3, 1, "", "add_ranges"], [6, 3, 1, "", "adjust_energy_correction"], [6, 3, 1, "", "adjust_ranges"], [6, 3, 1, "", "align_dld_sectors"], [6, 3, 1, "", "append_energy_axis"], [6, 3, 1, "", "append_tof_ns_axis"], [6, 3, 1, "", "apply_energy_correction"], [6, 3, 1, "", "bin_data"], [6, 3, 1, "", "calibrate"], [6, 4, 1, "", "dup"], [6, 3, 1, "", "feature_extract"], [6, 3, 1, "", "gather_calibration_metadata"], [6, 3, 1, "", "gather_correction_metadata"], [6, 3, 1, "", "load_data"], [6, 3, 1, "", "normalize"], [6, 4, 1, "", "nranges"], [6, 4, 1, "", "ntraces"], [6, 3, 1, "", "view"]], "sed.calibrator.momentum": [[6, 2, 1, "", "MomentumCorrector"], [6, 1, 1, "", "apply_dfield"], [6, 1, 1, "", "cm2palette"], [6, 1, 1, "", "detector_coordinates_2_k_coordinates"], [6, 1, 1, "", "dictmerge"], [6, 1, 1, "", "generate_inverse_dfield"], [6, 1, 1, "", "load_dfield"]], "sed.calibrator.momentum.MomentumCorrector": [[6, 3, 1, "", "add_features"], [6, 3, 1, "", "append_k_axis"], [6, 3, 1, "", "apply_correction"], [6, 3, 1, "", "apply_corrections"], [6, 3, 1, "", "calc_geometric_distances"], [6, 3, 1, "", "calc_inverse_dfield"], [6, 3, 1, "", "calc_symmetry_scores"], [6, 3, 1, "", "calibrate"], [6, 3, 1, "", "coordinate_transform"], [6, 3, 1, "", "feature_extract"], [6, 3, 1, "", "feature_select"], [6, 4, 1, "", "features"], [6, 3, 1, "", "gather_calibration_metadata"], [6, 3, 1, "", "gather_correction_metadata"], [6, 3, 1, "", "load_data"], [6, 3, 1, "", "pose_adjustment"], [6, 3, 1, "", "reset_deformation"], [6, 3, 1, "", "select_k_range"], [6, 3, 1, "", "select_slice"], [6, 3, 1, "", "select_slicer"], [6, 3, 1, "", "spline_warp_estimate"], [6, 4, 1, "", "symscores"], [6, 3, 1, "", "update_deformation"], [6, 3, 1, "", "view"]], "sed.core": [[8, 2, 1, "", "SedProcessor"], [7, 0, 0, "-", "config"], [10, 0, 0, "-", "dfops"], [14, 0, 0, "-", "metadata"]], "sed.core.SedProcessor": [[8, 3, 1, "", "add_attribute"], [8, 3, 1, "", "add_delay_offset"], [8, 3, 1, "", "add_energy_offset"], [8, 3, 1, "", "add_jitter"], [8, 3, 1, "", "add_time_stamped_data"], [8, 3, 1, "", "adjust_energy_correction"], [8, 3, 1, "", "align_dld_sectors"], [8, 3, 1, "", "append_energy_axis"], [8, 3, 1, "", "append_tof_ns_axis"], [8, 3, 1, "", "apply_energy_correction"], [8, 3, 1, "", "apply_momentum_calibration"], [8, 3, 1, "", "apply_momentum_correction"], [8, 4, 1, "", "attributes"], [8, 3, 1, "", "bin_and_load_momentum_calibration"], [8, 4, 1, "", "binned"], [8, 3, 1, "", "calibrate_delay_axis"], [8, 3, 1, "", "calibrate_energy_axis"], [8, 3, 1, "", "calibrate_momentum_axes"], [8, 3, 1, "", "compute"], [8, 4, 1, "", "config"], [8, 3, 1, "", "cpy"], [8, 4, 1, "", "dataframe"], [8, 3, 1, "", "define_features"], [8, 4, 1, "", "files"], [8, 3, 1, "", "filter_column"], [8, 3, 1, "", "find_bias_peaks"], [8, 3, 1, "", "generate_splinewarp"], [8, 3, 1, "", "get_normalization_histogram"], [8, 3, 1, "", "load"], [8, 3, 1, "", "load_bias_series"], [8, 4, 1, "", "normalization_histogram"], [8, 4, 1, "", "normalized"], [8, 3, 1, "", "pose_adjustment"], [8, 3, 1, "", "pre_binning"], [8, 3, 1, "", "save"], [8, 3, 1, "", "save_delay_calibration"], [8, 3, 1, "", "save_delay_offsets"], [8, 3, 1, "", "save_energy_calibration"], [8, 3, 1, "", "save_energy_correction"], [8, 3, 1, "", "save_energy_offset"], [8, 3, 1, "", "save_momentum_calibration"], [8, 3, 1, "", "save_splinewarp"], [8, 3, 1, "", "save_transformations"], [8, 3, 1, "", "save_workflow_params"], [8, 4, 1, "", "timed_dataframe"], [8, 3, 1, "", "view_event_histogram"]], "sed.core.config": [[7, 1, 1, "", "complete_dictionary"], [7, 1, 1, "", "load_config"], [7, 1, 1, "", "parse_config"], [7, 1, 1, "", "save_config"]], "sed.core.dfops": [[10, 1, 1, "", "add_time_stamped_data"], [10, 1, 1, "", "apply_filter"], [10, 1, 1, "", "apply_jitter"], [10, 1, 1, "", "backward_fill_lazy"], [10, 1, 1, "", "drop_column"], [10, 1, 1, "", "forward_fill_lazy"], [10, 1, 1, "", "map_columns_2d"], [10, 1, 1, "", "offset_by_other_columns"]], "sed.core.metadata": [[14, 5, 1, "", "DuplicateEntryError"], [14, 2, 1, "", "MetaHandler"]], "sed.core.metadata.MetaHandler": [[14, 3, 1, "", "add"], [14, 4, 1, "", "metadata"]], "sed.dataset": [[9, 0, 0, "-", "dataset"]], "sed.dataset.dataset": [[9, 2, 1, "", "Dataset"], [9, 2, 1, "", "DatasetsManager"]], "sed.dataset.dataset.Dataset": [[9, 4, 1, "", "available"], [9, 4, 1, "", "data_name"], [9, 4, 1, "", "existing_data_paths"], [9, 3, 1, "", "get"], [9, 3, 1, "", "remove"]], "sed.dataset.dataset.DatasetsManager": [[9, 6, 1, "", "FILENAME"], [9, 6, 1, "", "NAME"], [9, 3, 1, "", "add"], [9, 6, 1, "", "json_path"], [9, 3, 1, "", "load_datasets_dict"], [9, 3, 1, "", "remove"]], "sed.diagnostics": [[11, 1, 1, "", "grid_histogram"], [11, 1, 1, "", "plot_single_hist"]], "sed.io": [[12, 1, 1, "", "load_h5"], [12, 1, 1, "", "load_tiff"], [12, 1, 1, "", "to_h5"], [12, 1, 1, "", "to_nexus"], [12, 1, 1, "", "to_tiff"]], "sed.loader.base": [[13, 0, 0, "-", "loader"]], "sed.loader.base.loader": [[13, 2, 1, "", "BaseLoader"], [13, 6, 1, "", "LOADER"]], "sed.loader.base.loader.BaseLoader": [[13, 3, 1, "", "get_count_rate"], [13, 3, 1, "", "get_elapsed_time"], [13, 3, 1, "", "get_files_from_run_id"], [13, 3, 1, "", "read_dataframe"], [13, 6, 1, "", "supported_file_types"]], "sed.loader.flash": [[13, 0, 0, "-", "loader"], [13, 0, 0, "-", "metadata"]], "sed.loader.flash.loader": [[13, 2, 1, "", "FlashLoader"], [13, 6, 1, "", "LOADER"]], "sed.loader.flash.loader.FlashLoader": [[13, 4, 1, "", "available_channels"], [13, 3, 1, "", "buffer_file_handler"], [13, 3, 1, "", "concatenate_channels"], [13, 3, 1, "", "create_buffer_file"], [13, 3, 1, "", "create_dataframe_per_channel"], [13, 3, 1, "", "create_dataframe_per_electron"], [13, 3, 1, "", "create_dataframe_per_file"], [13, 3, 1, "", "create_dataframe_per_pulse"], [13, 3, 1, "", "create_dataframe_per_train"], [13, 3, 1, "", "create_multi_index_per_electron"], [13, 3, 1, "", "create_multi_index_per_pulse"], [13, 3, 1, "", "create_numpy_array_per_channel"], [13, 6, 1, "", "files"], [13, 3, 1, "", "get_channels"], [13, 3, 1, "", "get_count_rate"], [13, 3, 1, "", "get_elapsed_time"], [13, 3, 1, "", "get_files_from_run_id"], [13, 3, 1, "", "initialize_paths"], [13, 6, 1, "", "metadata"], [13, 3, 1, "", "parquet_handler"], [13, 3, 1, "", "parse_metadata"], [13, 3, 1, "", "read_dataframe"], [13, 3, 1, "", "reset_multi_index"], [13, 6, 1, "", "runs"], [13, 6, 1, "", "supported_file_types"]], "sed.loader.flash.metadata": [[13, 2, 1, "", "MetadataRetriever"]], "sed.loader.flash.metadata.MetadataRetriever": [[13, 3, 1, "", "get_metadata"]], "sed.loader.generic": [[13, 0, 0, "-", "loader"]], "sed.loader.generic.loader": [[13, 2, 1, "", "GenericLoader"], [13, 6, 1, "", "LOADER"]], "sed.loader.generic.loader.GenericLoader": [[13, 6, 1, "", "files"], [13, 3, 1, "", "get_count_rate"], [13, 3, 1, "", "get_elapsed_time"], [13, 3, 1, "", "get_files_from_run_id"], [13, 6, 1, "", "metadata"], [13, 3, 1, "", "read_dataframe"], [13, 6, 1, "", "runs"], [13, 6, 1, "", "supported_file_types"]], "sed.loader": [[13, 0, 0, "-", "loader_interface"], [13, 0, 0, "-", "mirrorutil"], [13, 0, 0, "-", "utils"]], "sed.loader.loader_interface": [[13, 1, 1, "", "get_loader"], [13, 1, 1, "", "get_names_of_all_loaders"]], "sed.loader.mirrorutil": [[13, 2, 1, "", "CopyTool"], [13, 1, 1, "", "get_target_dir"], [13, 1, 1, "", "mycopy"], [13, 1, 1, "", "mymakedirs"]], "sed.loader.mirrorutil.CopyTool": [[13, 3, 1, "", "cleanup_oldest_scan"], [13, 3, 1, "", "copy"], [13, 3, 1, "", "size"]], "sed.loader.mpes": [[13, 0, 0, "-", "loader"]], "sed.loader.mpes.loader": [[13, 6, 1, "", "LOADER"], [13, 2, 1, "", "MpesLoader"], [13, 1, 1, "", "get_archiver_data"], [13, 1, 1, "", "get_attribute"], [13, 1, 1, "", "get_count_rate"], [13, 1, 1, "", "get_elapsed_time"], [13, 1, 1, "", "get_groups_and_aliases"], [13, 1, 1, "", "hdf5_to_array"], [13, 1, 1, "", "hdf5_to_dataframe"], [13, 1, 1, "", "hdf5_to_timed_array"], [13, 1, 1, "", "hdf5_to_timed_dataframe"]], "sed.loader.mpes.loader.MpesLoader": [[13, 6, 1, "", "files"], [13, 3, 1, "", "gather_metadata"], [13, 3, 1, "", "get_count_rate"], [13, 3, 1, "", "get_elapsed_time"], [13, 3, 1, "", "get_files_from_run_id"], [13, 3, 1, "", "get_start_and_end_time"], [13, 6, 1, "", "metadata"], [13, 3, 1, "", "read_dataframe"], [13, 6, 1, "", "runs"], [13, 6, 1, "", "supported_file_types"]], "sed.loader.sxp": [[13, 0, 0, "-", "loader"]], "sed.loader.sxp.loader": [[13, 6, 1, "", "LOADER"], [13, 2, 1, "", "SXPLoader"]], "sed.loader.sxp.loader.SXPLoader": [[13, 4, 1, "", "available_channels"], [13, 3, 1, "", "buffer_file_handler"], [13, 3, 1, "", "concatenate_channels"], [13, 3, 1, "", "create_buffer_file"], [13, 3, 1, "", "create_dataframe_per_channel"], [13, 3, 1, "", "create_dataframe_per_electron"], [13, 3, 1, "", "create_dataframe_per_file"], [13, 3, 1, "", "create_dataframe_per_pulse"], [13, 3, 1, "", "create_dataframe_per_train"], [13, 3, 1, "", "create_multi_index_per_electron"], [13, 3, 1, "", "create_multi_index_per_pulse"], [13, 3, 1, "", "create_numpy_array_per_channel"], [13, 6, 1, "", "files"], [13, 3, 1, "", "gather_metadata"], [13, 3, 1, "", "get_channels"], [13, 3, 1, "", "get_count_rate"], [13, 3, 1, "", "get_elapsed_time"], [13, 3, 1, "", "get_files_from_run_id"], [13, 3, 1, "", "initialize_paths"], [13, 6, 1, "", "metadata"], [13, 3, 1, "", "parquet_handler"], [13, 3, 1, "", "read_dataframe"], [13, 3, 1, "", "reset_multi_index"], [13, 6, 1, "", "runs"], [13, 6, 1, "", "supported_file_types"]], "sed.loader.utils": [[13, 1, 1, "", "gather_files"], [13, 1, 1, "", "parse_h5_keys"], [13, 1, 1, "", "split_channel_bitwise"], [13, 1, 1, "", "split_dld_time_from_sector_id"]]}, "objtypes": {"0": "py:module", "1": "py:function", "2": "py:class", "3": "py:method", "4": "py:property", "5": "py:exception", "6": "py:attribute"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "function", "Python function"], "2": ["py", "class", "Python class"], "3": ["py", "method", "Python method"], "4": ["py", "property", "Python property"], "5": ["py", "exception", "Python exception"], "6": ["py", "attribute", "Python attribute"]}, "titleterms": {"sed": [0, 1, 17], "document": [0, 3], "user": [0, 9, 17], "guid": [0, 17], "exampl": [0, 9, 16], "api": [0, 4, 9], "commun": 0, "contribut": [0, 1], "get": [1, 9], "start": 1, "develop": [1, 2, 18], "workflow": [1, 19], "pull": 1, "request": 1, "guidelin": 1, "loader": [1, 13], "how": 3, "maintain": 3, "releas": 3, "bin": 5, "main": 5, "function": 5, "us": [5, 9], "helper": 5, "calibr": 6, "momentum": [6, 16], "correct": 6, "energi": 6, "delai": 6, "config": 7, "core": 8, "dataset": 9, "remov": 9, "attribut": 9, "ad": 9, "custom": 9, "datasetsmanag": 9, "default": [9, 16], "json": 9, "datafram": 10, "oper": 10, "diagnost": 11, "io": 12, "data": 13, "interfac": 13, "abstract": 13, "baseload": 13, "genericload": 13, "mpesload": 13, "flashload": 13, "sxploader": 13, "util": 13, "metadata": 14, "configur": 16, "set": 16, "file": 16, "mpe": 16, "meti": 16, "microscop": 16, "fhi": 16, "berlin": 16, "flash": 16, "hextof": 16, "desi": 16, "instal": [17, 18], "basic": 17, "concept": 17, "advanc": 17, "topic": 17, "version": 18}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.todo": 2, "sphinx.ext.viewcode": 1, "nbsphinx": 4, "sphinx": 58}, "alltitles": {"SED documentation": [[0, "sed-documentation"]], "User guide": [[0, "user-guide"]], "Examples": [[0, "examples"]], "API": [[0, "api"], [4, "api"], [9, "module-sed.dataset.dataset"]], "Community and contribution guide": [[0, "community-and-contribution-guide"]], "Contributing to sed": [[1, "contributing-to-sed"]], "Getting Started": [[1, "getting-started"]], "Development Workflow": [[1, "development-workflow"]], "Pull Request Guidelines": [[1, "pull-request-guidelines"]], "Developing a Loader": [[1, "developing-a-loader"]], "Development": [[2, "development"]], "How to Maintain": [[3, "how-to-maintain"]], "Documentation": [[3, "documentation"]], "Release": [[3, "release"]], "Binning": [[5, "binning"]], "Main functions": [[5, "module-sed.binning"]], "Used helper functions": [[5, "module-sed.binning.numba_bin"]], "Calibrator": [[6, "calibrator"]], "Momentum calibration and correction": [[6, "module-sed.calibrator.momentum"]], "Energy calibration and correction": [[6, "module-sed.calibrator.energy"]], "Delay calibration and correction": [[6, "module-sed.calibrator.delay"]], "Config": [[7, "module-sed.core.config"]], "Core": [[8, "module-sed.core"]], "Dataset": [[9, "dataset"]], "Getting datasets": [[9, "getting-datasets"]], "get()": [[9, "get"]], "remove()": [[9, "remove"]], "Attributes useful for user": [[9, "attributes-useful-for-user"]], "Example of adding custom datasets": [[9, "example-of-adding-custom-datasets"]], "DatasetsManager": [[9, "datasetsmanager"]], "Default datasets.json": [[9, "default-datasets-json"]], "Dataframe Operations": [[10, "module-sed.core.dfops"]], "Diagnostics": [[11, "module-sed.diagnostics"]], "IO": [[12, "module-sed.io"]], "Data loader": [[13, "data-loader"]], "Loader Interface": [[13, "module-sed.loader.loader_interface"]], "Abstract BaseLoader": [[13, "module-sed.loader.base.loader"]], "GenericLoader": [[13, "module-sed.loader.generic.loader"]], "MpesLoader": [[13, "module-sed.loader.mpes.loader"]], "FlashLoader": [[13, "module-sed.loader.flash.loader"]], "SXPLoader": [[13, "module-sed.loader.sxp.loader"]], "Utilities": [[13, "module-sed.loader.utils"]], "Metadata": [[14, "module-sed.core.metadata"]], "Configuration": [[16, "configuration"]], "Default configuration settings": [[16, "default-configuration-settings"]], "Example configuration file for mpes (METIS momentum microscope at FHI-Berlin)": [[16, "example-configuration-file-for-mpes-metis-momentum-microscope-at-fhi-berlin"]], "Example configuration file for flash (HEXTOF momentum microscope at FLASH, Desy)": [[16, "example-configuration-file-for-flash-hextof-momentum-microscope-at-flash-desy"]], "User Guide": [[17, "user-guide"]], "Installing SED": [[17, "installing-sed"]], "Basic concepts": [[17, "basic-concepts"]], "Advanced Topics": [[17, "advanced-topics"]], "Installation": [[18, "installation"]], "Development version": [[18, "development-version"]], "Workflows": [[19, "workflows"]]}, "indexentries": {"bin_centers_to_bin_edges() (in module sed.binning.utils)": [[5, "sed.binning.utils.bin_centers_to_bin_edges"]], "bin_dataframe() (in module sed.binning)": [[5, "sed.binning.bin_dataframe"]], "bin_edges_to_bin_centers() (in module sed.binning.utils)": [[5, "sed.binning.utils.bin_edges_to_bin_centers"]], "bin_partition() (in module sed.binning)": [[5, "sed.binning.bin_partition"]], "binsearch() (in module sed.binning.numba_bin)": [[5, "sed.binning.numba_bin.binsearch"]], "module": [[5, "module-sed.binning"], [5, "module-sed.binning.numba_bin"], [5, "module-sed.binning.utils"], [6, "module-sed.calibrator.delay"], [6, "module-sed.calibrator.energy"], [6, "module-sed.calibrator.momentum"], [7, "module-sed.core.config"], [8, "module-sed.core"], [9, "module-sed.dataset.dataset"], [10, "module-sed.core.dfops"], [11, "module-sed.diagnostics"], [12, "module-sed.io"], [13, "module-sed.loader.base.loader"], [13, "module-sed.loader.flash.loader"], [13, "module-sed.loader.flash.metadata"], [13, "module-sed.loader.generic.loader"], [13, "module-sed.loader.loader_interface"], [13, "module-sed.loader.mirrorutil"], [13, "module-sed.loader.mpes.loader"], [13, "module-sed.loader.sxp.loader"], [13, "module-sed.loader.utils"], [14, "module-sed.core.metadata"]], "numba_histogramdd() (in module sed.binning.numba_bin)": [[5, "sed.binning.numba_bin.numba_histogramdd"]], "sed.binning": [[5, "module-sed.binning"]], "sed.binning.numba_bin": [[5, "module-sed.binning.numba_bin"]], "sed.binning.utils": [[5, "module-sed.binning.utils"]], "simplify_binning_arguments() (in module sed.binning.utils)": [[5, "sed.binning.utils.simplify_binning_arguments"]], "delaycalibrator (class in sed.calibrator.delay)": [[6, "sed.calibrator.delay.DelayCalibrator"]], "energycalibrator (class in sed.calibrator.energy)": [[6, "sed.calibrator.energy.EnergyCalibrator"]], "momentumcorrector (class in sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.MomentumCorrector"]], "add_features() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.add_features"]], "add_offsets() (sed.calibrator.delay.delaycalibrator method)": [[6, "sed.calibrator.delay.DelayCalibrator.add_offsets"]], "add_offsets() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.add_offsets"]], "add_ranges() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.add_ranges"]], "adjust_energy_correction() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.adjust_energy_correction"]], "adjust_ranges() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.adjust_ranges"]], "align_dld_sectors() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.align_dld_sectors"]], "append_delay_axis() (sed.calibrator.delay.delaycalibrator method)": [[6, "sed.calibrator.delay.DelayCalibrator.append_delay_axis"]], "append_energy_axis() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.append_energy_axis"]], "append_k_axis() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.append_k_axis"]], "append_tof_ns_axis() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.append_tof_ns_axis"]], "apply_correction() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.apply_correction"]], "apply_corrections() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.apply_corrections"]], "apply_dfield() (in module sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.apply_dfield"]], "apply_energy_correction() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.apply_energy_correction"]], "bin_data() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.bin_data"]], "calc_geometric_distances() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.calc_geometric_distances"]], "calc_inverse_dfield() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.calc_inverse_dfield"]], "calc_symmetry_scores() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.calc_symmetry_scores"]], "calibrate() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.calibrate"]], "calibrate() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.calibrate"]], "cm2palette() (in module sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.cm2palette"]], "coordinate_transform() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.coordinate_transform"]], "correction_function() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.correction_function"]], "detector_coordinates_2_k_coordinates() (in module sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.detector_coordinates_2_k_coordinates"]], "dictmerge() (in module sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.dictmerge"]], "dup (sed.calibrator.energy.energycalibrator property)": [[6, "sed.calibrator.energy.EnergyCalibrator.dup"]], "extract_bias() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.extract_bias"]], "extract_delay_stage_parameters() (in module sed.calibrator.delay)": [[6, "sed.calibrator.delay.extract_delay_stage_parameters"]], "feature_extract() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.feature_extract"]], "feature_extract() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.feature_extract"]], "feature_select() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.feature_select"]], "features (sed.calibrator.momentum.momentumcorrector property)": [[6, "sed.calibrator.momentum.MomentumCorrector.features"]], "find_correspondence() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.find_correspondence"]], "find_nearest() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.find_nearest"]], "fit_energy_calibration() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.fit_energy_calibration"]], "gather_calibration_metadata() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.gather_calibration_metadata"]], "gather_calibration_metadata() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.gather_calibration_metadata"]], "gather_correction_metadata() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.gather_correction_metadata"]], "gather_correction_metadata() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.gather_correction_metadata"]], "generate_inverse_dfield() (in module sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.generate_inverse_dfield"]], "load_data() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.load_data"]], "load_data() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.load_data"]], "load_dfield() (in module sed.calibrator.momentum)": [[6, "sed.calibrator.momentum.load_dfield"]], "mm_to_ps() (in module sed.calibrator.delay)": [[6, "sed.calibrator.delay.mm_to_ps"]], "normalize() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.normalize"]], "normspec() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.normspec"]], "nranges (sed.calibrator.energy.energycalibrator property)": [[6, "sed.calibrator.energy.EnergyCalibrator.nranges"]], "ntraces (sed.calibrator.energy.energycalibrator property)": [[6, "sed.calibrator.energy.EnergyCalibrator.ntraces"]], "peakdetect1d() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.peakdetect1d"]], "peaksearch() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.peaksearch"]], "poly_energy_calibration() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.poly_energy_calibration"]], "pose_adjustment() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.pose_adjustment"]], "range_convert() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.range_convert"]], "reset_deformation() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.reset_deformation"]], "sed.calibrator.delay": [[6, "module-sed.calibrator.delay"]], "sed.calibrator.energy": [[6, "module-sed.calibrator.energy"]], "sed.calibrator.momentum": [[6, "module-sed.calibrator.momentum"]], "select_k_range() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.select_k_range"]], "select_slice() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.select_slice"]], "select_slicer() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.select_slicer"]], "spline_warp_estimate() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.spline_warp_estimate"]], "symscores (sed.calibrator.momentum.momentumcorrector property)": [[6, "sed.calibrator.momentum.MomentumCorrector.symscores"]], "tof2ev() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.tof2ev"]], "tof2evpoly() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.tof2evpoly"]], "tof2ns() (in module sed.calibrator.energy)": [[6, "sed.calibrator.energy.tof2ns"]], "update_deformation() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.update_deformation"]], "view() (sed.calibrator.energy.energycalibrator method)": [[6, "sed.calibrator.energy.EnergyCalibrator.view"]], "view() (sed.calibrator.momentum.momentumcorrector method)": [[6, "sed.calibrator.momentum.MomentumCorrector.view"]], "complete_dictionary() (in module sed.core.config)": [[7, "sed.core.config.complete_dictionary"]], "load_config() (in module sed.core.config)": [[7, "sed.core.config.load_config"]], "parse_config() (in module sed.core.config)": [[7, "sed.core.config.parse_config"]], "save_config() (in module sed.core.config)": [[7, "sed.core.config.save_config"]], "sed.core.config": [[7, "module-sed.core.config"]], "sedprocessor (class in sed.core)": [[8, "sed.core.SedProcessor"]], "add_attribute() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.add_attribute"]], "add_delay_offset() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.add_delay_offset"]], "add_energy_offset() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.add_energy_offset"]], "add_jitter() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.add_jitter"]], "add_time_stamped_data() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.add_time_stamped_data"]], "adjust_energy_correction() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.adjust_energy_correction"]], "align_dld_sectors() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.align_dld_sectors"]], "append_energy_axis() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.append_energy_axis"]], "append_tof_ns_axis() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.append_tof_ns_axis"]], "apply_energy_correction() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.apply_energy_correction"]], "apply_momentum_calibration() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.apply_momentum_calibration"]], "apply_momentum_correction() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.apply_momentum_correction"]], "attributes (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.attributes"]], "bin_and_load_momentum_calibration() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.bin_and_load_momentum_calibration"]], "binned (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.binned"]], "calibrate_delay_axis() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.calibrate_delay_axis"]], "calibrate_energy_axis() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.calibrate_energy_axis"]], "calibrate_momentum_axes() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.calibrate_momentum_axes"]], "compute() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.compute"]], "config (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.config"]], "cpy() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.cpy"]], "dataframe (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.dataframe"]], "define_features() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.define_features"]], "files (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.files"]], "filter_column() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.filter_column"]], "find_bias_peaks() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.find_bias_peaks"]], "generate_splinewarp() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.generate_splinewarp"]], "get_normalization_histogram() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.get_normalization_histogram"]], "load() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.load"]], "load_bias_series() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.load_bias_series"]], "normalization_histogram (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.normalization_histogram"]], "normalized (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.normalized"]], "pose_adjustment() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.pose_adjustment"]], "pre_binning() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.pre_binning"]], "save() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save"]], "save_delay_calibration() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_delay_calibration"]], "save_delay_offsets() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_delay_offsets"]], "save_energy_calibration() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_energy_calibration"]], "save_energy_correction() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_energy_correction"]], "save_energy_offset() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_energy_offset"]], "save_momentum_calibration() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_momentum_calibration"]], "save_splinewarp() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_splinewarp"]], "save_transformations() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_transformations"]], "save_workflow_params() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.save_workflow_params"]], "sed.core": [[8, "module-sed.core"]], "timed_dataframe (sed.core.sedprocessor property)": [[8, "sed.core.SedProcessor.timed_dataframe"]], "view_event_histogram() (sed.core.sedprocessor method)": [[8, "sed.core.SedProcessor.view_event_histogram"]], "dataset (class in sed.dataset.dataset)": [[9, "sed.dataset.dataset.Dataset"]], "datasetsmanager (class in sed.dataset.dataset)": [[9, "sed.dataset.dataset.DatasetsManager"]], "filename (sed.dataset.dataset.datasetsmanager attribute)": [[9, "sed.dataset.dataset.DatasetsManager.FILENAME"]], "name (sed.dataset.dataset.datasetsmanager attribute)": [[9, "sed.dataset.dataset.DatasetsManager.NAME"]], "add() (sed.dataset.dataset.datasetsmanager static method)": [[9, "sed.dataset.dataset.DatasetsManager.add"]], "available (sed.dataset.dataset.dataset property)": [[9, "sed.dataset.dataset.Dataset.available"]], "data_name (sed.dataset.dataset.dataset property)": [[9, "sed.dataset.dataset.Dataset.data_name"]], "existing_data_paths (sed.dataset.dataset.dataset property)": [[9, "sed.dataset.dataset.Dataset.existing_data_paths"]], "get() (sed.dataset.dataset.dataset method)": [[9, "sed.dataset.dataset.Dataset.get"]], "json_path (sed.dataset.dataset.datasetsmanager attribute)": [[9, "sed.dataset.dataset.DatasetsManager.json_path"]], "load_datasets_dict() (sed.dataset.dataset.datasetsmanager static method)": [[9, "sed.dataset.dataset.DatasetsManager.load_datasets_dict"]], "remove() (sed.dataset.dataset.dataset method)": [[9, "sed.dataset.dataset.Dataset.remove"]], "remove() (sed.dataset.dataset.datasetsmanager static method)": [[9, "sed.dataset.dataset.DatasetsManager.remove"]], "sed.dataset.dataset": [[9, "module-sed.dataset.dataset"]], "add_time_stamped_data() (in module sed.core.dfops)": [[10, "sed.core.dfops.add_time_stamped_data"]], "apply_filter() (in module sed.core.dfops)": [[10, "sed.core.dfops.apply_filter"]], "apply_jitter() (in module sed.core.dfops)": [[10, "sed.core.dfops.apply_jitter"]], "backward_fill_lazy() (in module sed.core.dfops)": [[10, "sed.core.dfops.backward_fill_lazy"]], "drop_column() (in module sed.core.dfops)": [[10, "sed.core.dfops.drop_column"]], "forward_fill_lazy() (in module sed.core.dfops)": [[10, "sed.core.dfops.forward_fill_lazy"]], "map_columns_2d() (in module sed.core.dfops)": [[10, "sed.core.dfops.map_columns_2d"]], "offset_by_other_columns() (in module sed.core.dfops)": [[10, "sed.core.dfops.offset_by_other_columns"]], "sed.core.dfops": [[10, "module-sed.core.dfops"]], "grid_histogram() (in module sed.diagnostics)": [[11, "sed.diagnostics.grid_histogram"]], "plot_single_hist() (in module sed.diagnostics)": [[11, "sed.diagnostics.plot_single_hist"]], "sed.diagnostics": [[11, "module-sed.diagnostics"]], "load_h5() (in module sed.io)": [[12, "sed.io.load_h5"]], "load_tiff() (in module sed.io)": [[12, "sed.io.load_tiff"]], "sed.io": [[12, "module-sed.io"]], "to_h5() (in module sed.io)": [[12, "sed.io.to_h5"]], "to_nexus() (in module sed.io)": [[12, "sed.io.to_nexus"]], "to_tiff() (in module sed.io)": [[12, "sed.io.to_tiff"]], "baseloader (class in sed.loader.base.loader)": [[13, "sed.loader.base.loader.BaseLoader"]], "copytool (class in sed.loader.mirrorutil)": [[13, "sed.loader.mirrorutil.CopyTool"]], "flashloader (class in sed.loader.flash.loader)": [[13, "sed.loader.flash.loader.FlashLoader"]], "genericloader (class in sed.loader.generic.loader)": [[13, "sed.loader.generic.loader.GenericLoader"]], "loader (in module sed.loader.base.loader)": [[13, "sed.loader.base.loader.LOADER"]], "loader (in module sed.loader.flash.loader)": [[13, "sed.loader.flash.loader.LOADER"]], "loader (in module sed.loader.generic.loader)": [[13, "sed.loader.generic.loader.LOADER"]], "loader (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.LOADER"]], "loader (in module sed.loader.sxp.loader)": [[13, "sed.loader.sxp.loader.LOADER"]], "metadataretriever (class in sed.loader.flash.metadata)": [[13, "sed.loader.flash.metadata.MetadataRetriever"]], "mpesloader (class in sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.MpesLoader"]], "sxploader (class in sed.loader.sxp.loader)": [[13, "sed.loader.sxp.loader.SXPLoader"]], "available_channels (sed.loader.flash.loader.flashloader property)": [[13, "sed.loader.flash.loader.FlashLoader.available_channels"]], "available_channels (sed.loader.sxp.loader.sxploader property)": [[13, "sed.loader.sxp.loader.SXPLoader.available_channels"]], "buffer_file_handler() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.buffer_file_handler"]], "buffer_file_handler() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.buffer_file_handler"]], "cleanup_oldest_scan() (sed.loader.mirrorutil.copytool method)": [[13, "sed.loader.mirrorutil.CopyTool.cleanup_oldest_scan"]], "concatenate_channels() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.concatenate_channels"]], "concatenate_channels() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.concatenate_channels"]], "copy() (sed.loader.mirrorutil.copytool method)": [[13, "sed.loader.mirrorutil.CopyTool.copy"]], "create_buffer_file() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_buffer_file"]], "create_buffer_file() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_buffer_file"]], "create_dataframe_per_channel() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_dataframe_per_channel"]], "create_dataframe_per_channel() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_dataframe_per_channel"]], "create_dataframe_per_electron() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_dataframe_per_electron"]], "create_dataframe_per_electron() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_dataframe_per_electron"]], "create_dataframe_per_file() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_dataframe_per_file"]], "create_dataframe_per_file() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_dataframe_per_file"]], "create_dataframe_per_pulse() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_dataframe_per_pulse"]], "create_dataframe_per_pulse() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_dataframe_per_pulse"]], "create_dataframe_per_train() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_dataframe_per_train"]], "create_dataframe_per_train() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_dataframe_per_train"]], "create_multi_index_per_electron() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_multi_index_per_electron"]], "create_multi_index_per_electron() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_multi_index_per_electron"]], "create_multi_index_per_pulse() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_multi_index_per_pulse"]], "create_multi_index_per_pulse() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_multi_index_per_pulse"]], "create_numpy_array_per_channel() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.create_numpy_array_per_channel"]], "create_numpy_array_per_channel() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.create_numpy_array_per_channel"]], "files (sed.loader.flash.loader.flashloader attribute)": [[13, "sed.loader.flash.loader.FlashLoader.files"]], "files (sed.loader.generic.loader.genericloader attribute)": [[13, "sed.loader.generic.loader.GenericLoader.files"]], "files (sed.loader.mpes.loader.mpesloader attribute)": [[13, "sed.loader.mpes.loader.MpesLoader.files"]], "files (sed.loader.sxp.loader.sxploader attribute)": [[13, "sed.loader.sxp.loader.SXPLoader.files"]], "gather_files() (in module sed.loader.utils)": [[13, "sed.loader.utils.gather_files"]], "gather_metadata() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.gather_metadata"]], "gather_metadata() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.gather_metadata"]], "get_archiver_data() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.get_archiver_data"]], "get_attribute() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.get_attribute"]], "get_channels() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.get_channels"]], "get_channels() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.get_channels"]], "get_count_rate() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.get_count_rate"]], "get_count_rate() (sed.loader.base.loader.baseloader method)": [[13, "sed.loader.base.loader.BaseLoader.get_count_rate"]], "get_count_rate() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.get_count_rate"]], "get_count_rate() (sed.loader.generic.loader.genericloader method)": [[13, "sed.loader.generic.loader.GenericLoader.get_count_rate"]], "get_count_rate() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.get_count_rate"]], "get_count_rate() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.get_count_rate"]], "get_elapsed_time() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.get_elapsed_time"]], "get_elapsed_time() (sed.loader.base.loader.baseloader method)": [[13, "sed.loader.base.loader.BaseLoader.get_elapsed_time"]], "get_elapsed_time() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.get_elapsed_time"]], "get_elapsed_time() (sed.loader.generic.loader.genericloader method)": [[13, "sed.loader.generic.loader.GenericLoader.get_elapsed_time"]], "get_elapsed_time() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.get_elapsed_time"]], "get_elapsed_time() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.get_elapsed_time"]], "get_files_from_run_id() (sed.loader.base.loader.baseloader method)": [[13, "sed.loader.base.loader.BaseLoader.get_files_from_run_id"]], "get_files_from_run_id() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.get_files_from_run_id"]], "get_files_from_run_id() (sed.loader.generic.loader.genericloader method)": [[13, "sed.loader.generic.loader.GenericLoader.get_files_from_run_id"]], "get_files_from_run_id() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.get_files_from_run_id"]], "get_files_from_run_id() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.get_files_from_run_id"]], "get_groups_and_aliases() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.get_groups_and_aliases"]], "get_loader() (in module sed.loader.loader_interface)": [[13, "sed.loader.loader_interface.get_loader"]], "get_metadata() (sed.loader.flash.metadata.metadataretriever method)": [[13, "sed.loader.flash.metadata.MetadataRetriever.get_metadata"]], "get_names_of_all_loaders() (in module sed.loader.loader_interface)": [[13, "sed.loader.loader_interface.get_names_of_all_loaders"]], "get_start_and_end_time() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.get_start_and_end_time"]], "get_target_dir() (in module sed.loader.mirrorutil)": [[13, "sed.loader.mirrorutil.get_target_dir"]], "hdf5_to_array() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.hdf5_to_array"]], "hdf5_to_dataframe() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.hdf5_to_dataframe"]], "hdf5_to_timed_array() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.hdf5_to_timed_array"]], "hdf5_to_timed_dataframe() (in module sed.loader.mpes.loader)": [[13, "sed.loader.mpes.loader.hdf5_to_timed_dataframe"]], "initialize_paths() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.initialize_paths"]], "initialize_paths() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.initialize_paths"]], "metadata (sed.loader.flash.loader.flashloader attribute)": [[13, "sed.loader.flash.loader.FlashLoader.metadata"]], "metadata (sed.loader.generic.loader.genericloader attribute)": [[13, "sed.loader.generic.loader.GenericLoader.metadata"]], "metadata (sed.loader.mpes.loader.mpesloader attribute)": [[13, "sed.loader.mpes.loader.MpesLoader.metadata"]], "metadata (sed.loader.sxp.loader.sxploader attribute)": [[13, "sed.loader.sxp.loader.SXPLoader.metadata"]], "mycopy() (in module sed.loader.mirrorutil)": [[13, "sed.loader.mirrorutil.mycopy"]], "mymakedirs() (in module sed.loader.mirrorutil)": [[13, "sed.loader.mirrorutil.mymakedirs"]], "parquet_handler() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.parquet_handler"]], "parquet_handler() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.parquet_handler"]], "parse_h5_keys() (in module sed.loader.utils)": [[13, "sed.loader.utils.parse_h5_keys"]], "parse_metadata() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.parse_metadata"]], "read_dataframe() (sed.loader.base.loader.baseloader method)": [[13, "sed.loader.base.loader.BaseLoader.read_dataframe"]], "read_dataframe() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.read_dataframe"]], "read_dataframe() (sed.loader.generic.loader.genericloader method)": [[13, "sed.loader.generic.loader.GenericLoader.read_dataframe"]], "read_dataframe() (sed.loader.mpes.loader.mpesloader method)": [[13, "sed.loader.mpes.loader.MpesLoader.read_dataframe"]], "read_dataframe() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.read_dataframe"]], "reset_multi_index() (sed.loader.flash.loader.flashloader method)": [[13, "sed.loader.flash.loader.FlashLoader.reset_multi_index"]], "reset_multi_index() (sed.loader.sxp.loader.sxploader method)": [[13, "sed.loader.sxp.loader.SXPLoader.reset_multi_index"]], "runs (sed.loader.flash.loader.flashloader attribute)": [[13, "sed.loader.flash.loader.FlashLoader.runs"]], "runs (sed.loader.generic.loader.genericloader attribute)": [[13, "sed.loader.generic.loader.GenericLoader.runs"]], "runs (sed.loader.mpes.loader.mpesloader attribute)": [[13, "sed.loader.mpes.loader.MpesLoader.runs"]], "runs (sed.loader.sxp.loader.sxploader attribute)": [[13, "sed.loader.sxp.loader.SXPLoader.runs"]], "sed.loader.base.loader": [[13, "module-sed.loader.base.loader"]], "sed.loader.flash.loader": [[13, "module-sed.loader.flash.loader"]], "sed.loader.flash.metadata": [[13, "module-sed.loader.flash.metadata"]], "sed.loader.generic.loader": [[13, "module-sed.loader.generic.loader"]], "sed.loader.loader_interface": [[13, "module-sed.loader.loader_interface"]], "sed.loader.mirrorutil": [[13, "module-sed.loader.mirrorutil"]], "sed.loader.mpes.loader": [[13, "module-sed.loader.mpes.loader"]], "sed.loader.sxp.loader": [[13, "module-sed.loader.sxp.loader"]], "sed.loader.utils": [[13, "module-sed.loader.utils"]], "size() (sed.loader.mirrorutil.copytool method)": [[13, "sed.loader.mirrorutil.CopyTool.size"]], "split_channel_bitwise() (in module sed.loader.utils)": [[13, "sed.loader.utils.split_channel_bitwise"]], "split_dld_time_from_sector_id() (in module sed.loader.utils)": [[13, "sed.loader.utils.split_dld_time_from_sector_id"]], "supported_file_types (sed.loader.base.loader.baseloader attribute)": [[13, "sed.loader.base.loader.BaseLoader.supported_file_types"]], "supported_file_types (sed.loader.flash.loader.flashloader attribute)": [[13, "sed.loader.flash.loader.FlashLoader.supported_file_types"]], "supported_file_types (sed.loader.generic.loader.genericloader attribute)": [[13, "sed.loader.generic.loader.GenericLoader.supported_file_types"]], "supported_file_types (sed.loader.mpes.loader.mpesloader attribute)": [[13, "sed.loader.mpes.loader.MpesLoader.supported_file_types"]], "supported_file_types (sed.loader.sxp.loader.sxploader attribute)": [[13, "sed.loader.sxp.loader.SXPLoader.supported_file_types"]], "duplicateentryerror": [[14, "sed.core.metadata.DuplicateEntryError"]], "metahandler (class in sed.core.metadata)": [[14, "sed.core.metadata.MetaHandler"]], "add() (sed.core.metadata.metahandler method)": [[14, "sed.core.metadata.MetaHandler.add"]], "metadata (sed.core.metadata.metahandler property)": [[14, "sed.core.metadata.MetaHandler.metadata"]], "sed.core.metadata": [[14, "module-sed.core.metadata"]]}})
\ No newline at end of file
diff --git a/sed/develop/sed/api.html b/sed/develop/sed/api.html
index 9299ac5..98e39a2 100644
--- a/sed/develop/sed/api.html
+++ b/sed/develop/sed/api.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'sed/api';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
@@ -53,7 +52,7 @@
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="Core" href="core.html" />
-    <link rel="prev" title="Tutorial for binning data from the HEXTOF instrument at FLASH" href="../tutorial/4_hextof_workflow.html" />
+    <link rel="prev" title="Workflows" href="../workflows/index.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
   <meta name="docsearch:version" content="0.2.1" />
@@ -466,12 +465,12 @@ <h1>API<a class="headerlink" href="#api" title="Permalink to this heading">#</a>
                   
 <div class="prev-next-area">
     <a class="left-prev"
-       href="../tutorial/4_hextof_workflow.html"
+       href="../workflows/index.html"
        title="previous page">
       <i class="fa-solid fa-angle-left"></i>
       <div class="prev-next-info">
         <p class="prev-next-subtitle">previous</p>
-        <p class="prev-next-title">Tutorial for binning data from the HEXTOF instrument at FLASH</p>
+        <p class="prev-next-title">Workflows</p>
       </div>
     </a>
     <a class="right-next"
diff --git a/sed/develop/sed/binning.html b/sed/develop/sed/binning.html
index d82f694..a652972 100644
--- a/sed/develop/sed/binning.html
+++ b/sed/develop/sed/binning.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'sed/binning';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/sed/calibrator.html b/sed/develop/sed/calibrator.html
index 9f7e25c..167e0d5 100644
--- a/sed/develop/sed/calibrator.html
+++ b/sed/develop/sed/calibrator.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'sed/calibrator';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/sed/config.html b/sed/develop/sed/config.html
index 8927ee6..620e145 100644
--- a/sed/develop/sed/config.html
+++ b/sed/develop/sed/config.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'sed/config';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/sed/core.html b/sed/develop/sed/core.html
index ffa09dd..3cd98bd 100644
--- a/sed/develop/sed/core.html
+++ b/sed/develop/sed/core.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'sed/core';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/sed/dataset.html b/sed/develop/sed/dataset.html
index 0ebd731..1b6c05c 100644
--- a/sed/develop/sed/dataset.html
+++ b/sed/develop/sed/dataset.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'sed/dataset';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/sed/dfops.html b/sed/develop/sed/dfops.html
index 6131706..c5fdd3d 100644
--- a/sed/develop/sed/dfops.html
+++ b/sed/develop/sed/dfops.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'sed/dfops';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/sed/diagnostic.html b/sed/develop/sed/diagnostic.html
index 0db44d3..9a6c08b 100644
--- a/sed/develop/sed/diagnostic.html
+++ b/sed/develop/sed/diagnostic.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'sed/diagnostic';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/sed/io.html b/sed/develop/sed/io.html
index 3978753..6d26158 100644
--- a/sed/develop/sed/io.html
+++ b/sed/develop/sed/io.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'sed/io';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/sed/loader.html b/sed/develop/sed/loader.html
index 39e2b94..e9fe4ed 100644
--- a/sed/develop/sed/loader.html
+++ b/sed/develop/sed/loader.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'sed/loader';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/sed/metadata.html b/sed/develop/sed/metadata.html
index cea360d..8d5a925 100644
--- a/sed/develop/sed/metadata.html
+++ b/sed/develop/sed/metadata.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'sed/metadata';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
diff --git a/sed/develop/user_guide/advanced_topics.html b/sed/develop/user_guide/advanced_topics.html
index f356c67..b940ec2 100644
--- a/sed/develop/user_guide/advanced_topics.html
+++ b/sed/develop/user_guide/advanced_topics.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'user_guide/advanced_topics';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
@@ -52,7 +51,7 @@
         </script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="Binning of temperature-dependent ARPES data using time-stamped external temperature data" href="../tutorial/6_binning_with_time-stamped_data.html" />
+    <link rel="next" title="Workflows" href="../workflows/index.html" />
     <link rel="prev" title="Configuration" href="config.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
@@ -366,16 +365,8 @@
 
 </ul>
 <ul class="nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/1_binning_fake_data.html">Binning demonstration on locally generated fake data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/2_conversion_pipeline_for_example_time-resolved_ARPES_data.html">Demonstration of the conversion pipeline using time-resolved ARPES data stored on Zenodo</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/3_metadata_collection_and_export_to_NeXus.html">Binning with metadata generation, and storing into a NeXus file</a></li>
 <li class="toctree-l1"><a class="reference internal" href="config.html">Configuration</a></li>
 </ul>
-<ul class="nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/6_binning_with_time-stamped_data.html">Binning of temperature-dependent ARPES data using time-stamped external temperature data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/7_correcting_orthorhombic_symmetry.html">Distortion correction with orthorhombic symmetry</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/8_jittering_tutorial.html">Correct use of Jittering</a></li>
-</ul>
 </div>
 </nav></div>
     </div>
@@ -444,11 +435,6 @@
                 <article class="bd-article">
                   
   <div class="toctree-wrapper compound">
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/6_binning_with_time-stamped_data.html">Binning of temperature-dependent ARPES data using time-stamped external temperature data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/7_correcting_orthorhombic_symmetry.html">Distortion correction with orthorhombic symmetry</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/8_jittering_tutorial.html">Correct use of Jittering</a></li>
-</ul>
 </div>
 
 
@@ -471,11 +457,11 @@
       </div>
     </a>
     <a class="right-next"
-       href="../tutorial/6_binning_with_time-stamped_data.html"
+       href="../workflows/index.html"
        title="next page">
       <div class="prev-next-info">
         <p class="prev-next-subtitle">next</p>
-        <p class="prev-next-title">Binning of temperature-dependent ARPES data using time-stamped external temperature data</p>
+        <p class="prev-next-title">Workflows</p>
       </div>
       <i class="fa-solid fa-angle-right"></i>
     </a>
diff --git a/sed/develop/user_guide/config.html b/sed/develop/user_guide/config.html
index 6259c85..43b4192 100644
--- a/sed/develop/user_guide/config.html
+++ b/sed/develop/user_guide/config.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'user_guide/config';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
@@ -53,7 +52,7 @@
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="&lt;no title&gt;" href="advanced_topics.html" />
-    <link rel="prev" title="Binning with metadata generation, and storing into a NeXus file" href="../tutorial/3_metadata_collection_and_export_to_NeXus.html" />
+    <link rel="prev" title="Installation" href="installation.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
   <meta name="docsearch:version" content="0.2.1" />
@@ -366,16 +365,8 @@
 
 </ul>
 <ul class="current nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/1_binning_fake_data.html">Binning demonstration on locally generated fake data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/2_conversion_pipeline_for_example_time-resolved_ARPES_data.html">Demonstration of the conversion pipeline using time-resolved ARPES data stored on Zenodo</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/3_metadata_collection_and_export_to_NeXus.html">Binning with metadata generation, and storing into a NeXus file</a></li>
 <li class="toctree-l1 current active"><a class="current reference internal" href="#">Configuration</a></li>
 </ul>
-<ul class="nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/6_binning_with_time-stamped_data.html">Binning of temperature-dependent ARPES data using time-stamped external temperature data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/7_correcting_orthorhombic_symmetry.html">Distortion correction with orthorhombic symmetry</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/8_jittering_tutorial.html">Correct use of Jittering</a></li>
-</ul>
 </div>
 </nav></div>
     </div>
@@ -1111,12 +1102,12 @@ <h2>Example configuration file for flash (HEXTOF momentum microscope at FLASH, D
                   
 <div class="prev-next-area">
     <a class="left-prev"
-       href="../tutorial/3_metadata_collection_and_export_to_NeXus.html"
+       href="installation.html"
        title="previous page">
       <i class="fa-solid fa-angle-left"></i>
       <div class="prev-next-info">
         <p class="prev-next-subtitle">previous</p>
-        <p class="prev-next-title">Binning with metadata generation, and storing into a NeXus file</p>
+        <p class="prev-next-title">Installation</p>
       </div>
     </a>
     <a class="right-next"
diff --git a/sed/develop/user_guide/index.html b/sed/develop/user_guide/index.html
index 3d1b83b..b4d2778 100644
--- a/sed/develop/user_guide/index.html
+++ b/sed/develop/user_guide/index.html
@@ -43,7 +43,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'user_guide/index';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
@@ -367,16 +366,8 @@
 
 </ul>
 <ul class="nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/1_binning_fake_data.html">Binning demonstration on locally generated fake data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/2_conversion_pipeline_for_example_time-resolved_ARPES_data.html">Demonstration of the conversion pipeline using time-resolved ARPES data stored on Zenodo</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/3_metadata_collection_and_export_to_NeXus.html">Binning with metadata generation, and storing into a NeXus file</a></li>
 <li class="toctree-l1"><a class="reference internal" href="config.html">Configuration</a></li>
 </ul>
-<ul class="nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/6_binning_with_time-stamped_data.html">Binning of temperature-dependent ARPES data using time-stamped external temperature data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/7_correcting_orthorhombic_symmetry.html">Distortion correction with orthorhombic symmetry</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/8_jittering_tutorial.html">Correct use of Jittering</a></li>
-</ul>
 </div>
 </nav></div>
     </div>
@@ -456,9 +447,6 @@ <h2>Installing SED<a class="headerlink" href="#installing-sed" title="Permalink
 <h2>Basic concepts<a class="headerlink" href="#basic-concepts" title="Permalink to this heading">#</a></h2>
 <div class="toctree-wrapper compound">
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/1_binning_fake_data.html">Binning demonstration on locally generated fake data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/2_conversion_pipeline_for_example_time-resolved_ARPES_data.html">Demonstration of the conversion pipeline using time-resolved ARPES data stored on Zenodo</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/3_metadata_collection_and_export_to_NeXus.html">Binning with metadata generation, and storing into a NeXus file</a></li>
 <li class="toctree-l1"><a class="reference internal" href="config.html">Configuration</a></li>
 </ul>
 </div>
@@ -466,11 +454,6 @@ <h2>Basic concepts<a class="headerlink" href="#basic-concepts" title="Permalink
 <section id="advanced-topics">
 <h2>Advanced Topics<a class="headerlink" href="#advanced-topics" title="Permalink to this heading">#</a></h2>
 <div class="toctree-wrapper compound">
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/6_binning_with_time-stamped_data.html">Binning of temperature-dependent ARPES data using time-stamped external temperature data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/7_correcting_orthorhombic_symmetry.html">Distortion correction with orthorhombic symmetry</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/8_jittering_tutorial.html">Correct use of Jittering</a></li>
-</ul>
 </div>
 </section>
 </section>
diff --git a/sed/develop/user_guide/installation.html b/sed/develop/user_guide/installation.html
index e48e8a6..24560ae 100644
--- a/sed/develop/user_guide/installation.html
+++ b/sed/develop/user_guide/installation.html
@@ -42,7 +42,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'user_guide/installation';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
@@ -52,7 +51,7 @@
         </script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="Binning demonstration on locally generated fake data" href="../tutorial/1_binning_fake_data.html" />
+    <link rel="next" title="Configuration" href="config.html" />
     <link rel="prev" title="User Guide" href="index.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
@@ -366,16 +365,8 @@
 
 </ul>
 <ul class="nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/1_binning_fake_data.html">Binning demonstration on locally generated fake data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/2_conversion_pipeline_for_example_time-resolved_ARPES_data.html">Demonstration of the conversion pipeline using time-resolved ARPES data stored on Zenodo</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/3_metadata_collection_and_export_to_NeXus.html">Binning with metadata generation, and storing into a NeXus file</a></li>
 <li class="toctree-l1"><a class="reference internal" href="config.html">Configuration</a></li>
 </ul>
-<ul class="nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/6_binning_with_time-stamped_data.html">Binning of temperature-dependent ARPES data using time-stamped external temperature data</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/7_correcting_orthorhombic_symmetry.html">Distortion correction with orthorhombic symmetry</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/8_jittering_tutorial.html">Correct use of Jittering</a></li>
-</ul>
 </div>
 </nav></div>
     </div>
@@ -541,11 +532,11 @@ <h1>Development version<a class="headerlink" href="#development-version" title="
       </div>
     </a>
     <a class="right-next"
-       href="../tutorial/1_binning_fake_data.html"
+       href="config.html"
        title="next page">
       <div class="prev-next-info">
         <p class="prev-next-subtitle">next</p>
-        <p class="prev-next-title">Binning demonstration on locally generated fake data</p>
+        <p class="prev-next-title">Configuration</p>
       </div>
       <i class="fa-solid fa-angle-right"></i>
     </a>
diff --git a/sed/develop/workflows/index.html b/sed/develop/workflows/index.html
index 8f99c52..41d30fc 100644
--- a/sed/develop/workflows/index.html
+++ b/sed/develop/workflows/index.html
@@ -43,7 +43,6 @@
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script src="https://unpkg.com/@jupyter-widgets/html-manager@^0.20.1/dist/embed-amd.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'workflows/index';</script>
     <script>
         DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
@@ -53,8 +52,8 @@
         </script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="Tutorial for binning data from the HEXTOF instrument at FLASH" href="../tutorial/4_hextof_workflow.html" />
-    <link rel="prev" title="Correct use of Jittering" href="../tutorial/8_jittering_tutorial.html" />
+    <link rel="next" title="API" href="../sed/api.html" />
+    <link rel="prev" title="&lt;no title&gt;" href="../user_guide/advanced_topics.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
   <meta name="docsearch:version" content="0.2.1" />
@@ -362,10 +361,7 @@
 <nav class="bd-docs-nav bd-links"
      aria-label="Section Navigation">
   <p class="bd-links__title" role="heading" aria-level="1">Section Navigation</p>
-  <div class="bd-toc-item navbar-nav"><ul class="nav bd-sidenav">
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/4_hextof_workflow.html">Tutorial for binning data from the HEXTOF instrument at FLASH</a></li>
-</ul>
-</div>
+  <div class="bd-toc-item navbar-nav"></div>
 </nav></div>
     </div>
   
@@ -432,50 +428,6 @@
   <section id="workflows">
 <h1>Workflows<a class="headerlink" href="#workflows" title="Permalink to this heading">#</a></h1>
 <div class="toctree-wrapper compound">
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="../tutorial/4_hextof_workflow.html">Tutorial for binning data from the HEXTOF instrument at FLASH</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Preparation">Preparation</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Import-necessary-libraries">Import necessary libraries</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Get-data-paths">Get data paths</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Config-setup">Config setup</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#cleanup-previous-config-files">cleanup previous config files</a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Load-a-chessy-sample-run">Load a chessy sample run</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Generate-the-Processor-instance">Generate the Processor instance</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Add-Jitter">Add Jitter</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#inspect-the-dataframe">inspect the dataframe</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Visualizing-event-histograms">Visualizing event histograms</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Binning">Binning</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#visualize-the-result">visualize the result</a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Optical-Spot-Profile">Optical Spot Profile</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Energy-Calibration">Energy Calibration</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#sector-alignment">sector alignment</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#time-of-flight-spectrum">time-of-flight spectrum</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#find-calibration-parameters">find calibration parameters</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#generate-the-energy-axis">generate the energy axis</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Bin-in-energy">Bin in energy</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#correct-offsets">correct offsets</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#save-the-calibration-parameters">save the calibration parameters</a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Correct-delay-axis">Correct delay axis</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Run-the-workflow-from-the-config-file">Run the workflow from the config file</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#plot-the-delayStage-values">plot the delayStage values</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#bin-in-the-corrected-delay-axis">bin in the corrected delay axis</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#save-parameters">save parameters</a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Run-workflow-entirely-from-config.">Run workflow entirely from config.</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Compute-the-results">Compute the results</a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="../tutorial/4_hextof_workflow.html#Save-results">Save results</a></li>
-</ul>
-</li>
-</ul>
 </div>
 </section>
 
@@ -490,20 +442,20 @@ <h1>Workflows<a class="headerlink" href="#workflows" title="Permalink to this he
                   
 <div class="prev-next-area">
     <a class="left-prev"
-       href="../tutorial/8_jittering_tutorial.html"
+       href="../user_guide/advanced_topics.html"
        title="previous page">
       <i class="fa-solid fa-angle-left"></i>
       <div class="prev-next-info">
         <p class="prev-next-subtitle">previous</p>
-        <p class="prev-next-title">Correct use of Jittering</p>
+        <p class="prev-next-title">&lt;no title&gt;</p>
       </div>
     </a>
     <a class="right-next"
-       href="../tutorial/4_hextof_workflow.html"
+       href="../sed/api.html"
        title="next page">
       <div class="prev-next-info">
         <p class="prev-next-subtitle">next</p>
-        <p class="prev-next-title">Tutorial for binning data from the HEXTOF instrument at FLASH</p>
+        <p class="prev-next-title">API</p>
       </div>
       <i class="fa-solid fa-angle-right"></i>
     </a>