diff --git a/inst/book/cell-cycle.Rmd b/inst/book/cell-cycle.Rmd index d1adb7f..f518777 100644 --- a/inst/book/cell-cycle.Rmd +++ b/inst/book/cell-cycle.Rmd @@ -318,7 +318,7 @@ library(scRNAseq) sce.leng <- LengESCData(ensembl=TRUE) # Performing a default analysis without any removal: -sce.leng <- logNormCounts(sce.leng, assay.type="normcounts") +sce.leng <- logNormCounts(sce.leng, assay.type="normalized") dec.leng <- modelGeneVar(sce.leng) top.hvgs <- getTopHVGs(dec.leng, n=1000) sce.leng <- runPCA(sce.leng, subset_row=top.hvgs)