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OHDSI / OncologyWG Public

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CDM Extension

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golozara edited this page Mar 18, 2020 · 12 revisions

Oncology Module CDM Extension

// TODO: intro, background

Contents

Data Model

Cancer Representation
CONCEPT_NUMERIC
MEASUREMENT
EPISODE
EPISODE_EVENT

Vocabularies

ICD-O
NAACCR
HemOnc
CAP
ClinVar
Nebraska Lexicon

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Toggle table of contents Pages 55

OHDSI Oncology Workgroup

Problem Space and Goals

Subgroups & Meeting Schedule

Oncology Working Group Publications/Presentation

Oncology CDM Extension

Data Model

Cancer Models Representation
EPISODE
EPISODE_EVENT
MEASUREMENT
CONCEPT_NUMERIC
Disease Episode Model

Vocabularies

ICD-O
NAACCR
HemOnc
CAP
Genomic Vocabulary
Nebraska Lexicon

Genomic Data Model

OMOP Model

Mapping of Genomic Data to MEASUREMENT Table

ETL

Populating the OMOP Oncology Extension
NAACCR Tumor Registry
EHR and Claims
- Treatment Episodes (Regimen Derivation)

Analysis

Use Cases
Results

Data Quality

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