Task Group: Cancer biomarkers

[tfalcs]

Problem Space

Currently the OMOP Genomic vocabulary is the vocabulary used to map sequencing (NGS) data into OMOP. However, the current representation of the concepts is not question/answer (question in concept_id field; answer a separate column (_value field) of same table) and the current concept_names of many of the concepts indicate simply measurement of, making it ambiguous as to what the finding is.

Proposed Solutions

Decision point: to represent NGS data as question/answer (as described above) or to update the concept_name to indicate an implicit finding.

Tasks

• Resolve Decision Points: X
• Investigate & create tasks: X
• Complete outstanding work: X
• Validate and ingest: X
• Document: X
• Task Group: Cancer Biomarkers #644