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Add gene and related entities from SO #179

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Add gene and related entities from SO #179

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cmungall
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@cmungall cmungall commented Sep 13, 2021

This PR creates new classes related to a subset of root terms from SO, with the following equivalents:

subject_id subject_label predicate object_id object_label comments
COB:0000501 gene owl:equivalentClass SO:0000704 gene .
COB:0000501 gene owl:equivalentClass MSO:0000704 gene .
COB:0000503 nucleotide region owl:equivalentClass MSO:3100210 nucleotide region In MSO can be part of dsDNA molecule
COB:0000503 nucleotide region owl:subClassOf SO:0000001 region .
COB:0000504 region of nucleic acid polymer or protein owl:equivalentClass SO:0000001 region .
COB:0000504 region of nucleic acid polymer or protein owl:equivalentClass MSO:0000001 sequence molecular entity region MSO defines as two or more sequence units
COB:0000506 polypeptide region owl:equivalentClass SO:0000839 polypeptide region .
COB:0000506 polypeptide region owl:equivalentClass MSO:0000839 peptide region MSO defines as two or more sequence units
COB:0000507 virus owl:equivalentClass NCBITaxon:10239 Viruses .

For further context, see SO and COB, this was presented at the 2021 COB workshop (https://drive.google.com/drive/folders/13Ema8Ev-7fiP-pAvJIFtS9rZIV2rs5es)


Datatype: xsd:integer
Datatype: rdf:PlainLiteral
Annotations: allocatedto: "Chris Mungall"
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Any chance this has syntax to connect your ORCID?

@matentzn
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matentzn commented Sep 13, 2021 via email

@cmungall
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cmungall commented Nov 3, 2022

This PR was done quickly at a meeting with the intent to add more context later... but that was never done. I'll try to take a look later

@wdduncan
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wdduncan commented Nov 3, 2022

Just noticing this ...
Should cob-edit.owl be in functional syntax?

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@cmungall resolved conflicts.

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4 participants