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Commits on Dec 16, 2024

• Add documentation for applications of Casanovo (#418)

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  melihyilmaz

  and

  bittremieux

  authored
  5d06bea

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Commits on Dec 13, 2024

• Fix changelog

  bittremieux

  committed
  c404f6f

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• Reversed peptide aa scores hotfix (#417)

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  Lilferrit

  authored
  23c02f6

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• Update changelog

  bittremieux

  committed
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Commits on Nov 21, 2024

• Casanovo Nextflow Workflow Documentation (#391)

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  bittremieux

  committed
  c128c7d

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• Collect all Casanovo references on a dedicated citation page (#403)

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  bittremieux

  and

  github-actions[bot]

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Commits on Sep 19, 2024

• Update docs with model weights (#384)

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  melihyilmaz

  and

  github-actions[bot]

  authored
  e6321a7

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Commits on Aug 6, 2024

• upgrade codecove to v4 (#364)

  Lilferrit

  authored
  bf1e5a3

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• Bug report template (#360)

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  bittremieux

  and

  Lilferrit

  authored
  f792527

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Commits on Aug 2, 2024

• Update paper reference (#361)

  bittremieux

  authored
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Commits on Jun 25, 2024

• Restrict NumPy to pre-2.0 (#344)

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  bittremieux

  authored
  ac2ddec

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Commits on May 15, 2024

• Compatible 9-species data reference (#334)

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  bittremieux

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  github-actions[bot]

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Commits on May 14, 2024

• Prepare release v4.2.0 (#331)

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  5 peopleauthored
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Commits on Mar 27, 2024

• Fix alert boxes

  bittremieux

  committed
  6dc301c

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• Supported file formats documentation (#317)

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  bittremieux

  authored
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Commits on Feb 24, 2024

• Add FAQ entry about antibody sequencing (#304)

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• Add 9-species model weights link to FAQ (#303)

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Commits on Feb 16, 2024

• Prepare for release v4.1.0 (#296)

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  3 peopleauthored
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Commits on Feb 14, 2024

• Add FAQ on how to change the LR scheduler (#294)

  bittremieux

  authored
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Commits on Feb 7, 2024

• Add non-enzymatic dataset to FAQ (#288)

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  melihyilmaz

  and

  bittremieux

  authored
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Commits on Jan 26, 2024

• One more black fix

  bittremieux

  committed
  e17808b

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• Fix new black complaints

  bittremieux

  committed
  ebf5cd8

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• Document how to use multiple GPUs

  bittremieux

  committed
  6ee6351

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Commits on Jan 9, 2024

• Merge pull request #274 from Noble-Lab/actions

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  bittremieux

  authored
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Commits on Dec 25, 2023

• Update Actions versions

  bittremieux

  committed
  226b2cf

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• Allow manually triggering the PyPI upload

  bittremieux

  authored
  2e8f579

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Commits on Dec 22, 2023

• Merge pull request #273 from Noble-Lab/release

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  bittremieux

  authored
  3c2d3f5

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• Update version number in changelog

  bittremieux

  committed
  c862bb5

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• Merge dev into main

  bittremieux

  committed
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Commits on Dec 13, 2023

• Minor fix to label smoothing (#270)

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  melihyilmaz

  authored
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Commits on Dec 12, 2023

• Use config options and auto-downloaded weights (#246)

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  4 peopleauthored
  2aed9e5

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• Label smoothing in training (#261)

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  melihyilmaz

  and

  Justin Sanders

  authored
  3b688e8

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Commits on Dec 11, 2023

• Check for invalid/missin config entries (#268)

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  bittremieux

  authored
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Commits on Nov 9, 2023

• Issue error for unrecognized/missing config file entry (#257)

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  ishagokhale

  and

  Isha Gokhale

  authored
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Commits on Oct 24, 2023

• Document how to check that the GPU is used (#256)

  bittremieux

  authored
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