From 0634f90b3f61bd277d67b217c403e6d686af4586 Mon Sep 17 00:00:00 2001 From: Lilferrit Date: Tue, 29 Oct 2024 16:46:59 -0700 Subject: [PATCH] fixed links --- docs/nextflow.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/nextflow.md b/docs/nextflow.md index 7104ece3..b459e40e 100644 --- a/docs/nextflow.md +++ b/docs/nextflow.md @@ -1,6 +1,6 @@ # Casanovo Nextflow Workflow -To simplify the process of setting up and running Casanovo, a dedicated [Nextflow](https://proteowizard.sourceforge.io/tools/msconvert.html) workflow is available. -In addition to simplifying the installation of Casanovo and its dependencies, the Casanovo Nextflow workflow provides an automated mass spectrometry data pipeline that converts input data files to a Casanovo-compatible format using [msconvert](https://bioinformaticshome.com/tools/proteomics/descriptions/msconvert.html#gsc.tab=0), infers peptide sequences using Casanovo, and (optionally) uploads the results to [Limelight](https://limelight-ms.org/) - a platform for sharing and visualizing proteomics results. +To simplify the process of setting up and running Casanovo, a dedicated [Nextflow](https://www.nextflow.io/) workflow is available. +In addition to simplifying the installation of Casanovo and its dependencies, the Casanovo Nextflow workflow provides an automated mass spectrometry data pipeline that converts input data files to a Casanovo-compatible format using [msconvert](https://proteowizard.sourceforge.io/tools/msconvert.html), infers peptide sequences using Casanovo, and (optionally) uploads the results to [Limelight](https://limelight-ms.org/) - a platform for sharing and visualizing proteomics results. The workflow can be used on POSIX-compatible (UNIX) systems, Windows using WSL, or on a cloud platform such as AWS. For more details, refer to the [Casanovo Nextflow Workflow Documentation](https://nf-ms-dda-casanovo.readthedocs.io/en/latest/#). \ No newline at end of file