From f707618e26925ca2753402007f8e2b32b1b85324 Mon Sep 17 00:00:00 2001 From: Hu Jiang Date: Tue, 14 May 2019 22:39:58 +0800 Subject: [PATCH] Update README.md --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 1687f7e..69224ea 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,7 @@ [![Issues](https://img.shields.io/github/issues/Nextomics/NextPolish.svg)](https://github.com/Nextomics/NextPolish/issues) # NextPolish -NextPolish is used to fix base errors (SNP/Indel) in the genome generated by noisy long reads, it can be used with short read data only or long read data only or a combination of both. It contains two core modules and four steps (steps 3 & 4 are optional), and use a stepwise fashion to correct the error bases in reference genome. To correct the raw TGS long reads with approximately 15-10% sequencing errors, please use [NextDenovo](https://github.com/Nextomics/NextDenovo). +NextPolish is used to fix base errors (SNP/Indel) in the genome generated by noisy long reads, it can be used with short read data only or long read data only or a combination of both. It contains two core modules and four steps (steps 3 & 4 are optional), and use a stepwise fashion to correct the error bases in reference genome. To correct the raw third-generation sequencing (TGS) long reads with approximately 15-10% sequencing errors, please use [NextDenovo](https://github.com/Nextomics/NextDenovo). * **DOWNLOAD** click [here](https://github.com/Nextomics/NextPolish/releases/download/v1.0.1/NextPolish.tgz) or use the following command: @@ -42,7 +42,7 @@ click [here](https://github.com/Nextomics/NextPolish/releases/download/v1.0.1/Ne [General] # global options job_type = sge # [local, sge, pbs...]. (default: sge) job_prefix = nextPolish # prefix tag for jobs. (default: nextPolish) - task = best # task need to run [all, default, best, 1, 2, 3, 4, 12, 123, 12123...], all=1234, default=12, best=12121212. (default: default) + task = best # task need to run [all, default, best, 1, 2, 3, 4, 12, 123, 12123...], all=1234, default=12, best=12121212. (default: default) rewrite = no # overwrite existed directory [yes, no]. (default: no) rerun = 3 # re-run unfinished jobs untill finished or reached ${rerun} loops, 0=no. (default: 3) parallel_jobs = 30 # number of tasks used to run in parallel. (default: 30)