Jupyter ipywidget to interactively explore the Allen Mouse Brain Common Coordinate Framework v3, plot dynamic markers, or cell representations. Couple with the nwb-jupyter-widgets for an understanding of electrophysiology.
pip install ccfwidgetIn Jupyter:
from ccfwidget import CCFWidget
ccf = CCFWidget()
ccfExamples on Binder:
Additional examples:
With the error:
[...]
IOPub message rate exceeded.
[...]
Start jupyter with the flag:
jupyter notebook --NotebookApp.iopub_msg_rate_limit=1e12
Contributions are welcome and appreciated.
To install an editable build:
python3 -m pip install flit
flit install --symlink