From 19844da336872cb215fd76a84639f8f04e76116a Mon Sep 17 00:00:00 2001 From: dizcza Date: Thu, 31 Oct 2019 15:34:35 +0100 Subject: [PATCH] elephant v0.6.4 [workshop] --- MANIFEST.in | 1 + doc/reference/gpfa.rst | 6 ++++++ doc/release_notes.rst | 32 ++++++++++++++++++++++++++++++++ elephant/VERSION | 2 +- 4 files changed, 40 insertions(+), 1 deletion(-) create mode 100644 doc/reference/gpfa.rst diff --git a/MANIFEST.in b/MANIFEST.in index fe492b888..136d72e68 100644 --- a/MANIFEST.in +++ b/MANIFEST.in @@ -7,6 +7,7 @@ include elephant/current_source_density_src/README.md include elephant/current_source_density_src/test_data.mat include elephant/neural_trajectory_src/README.md include elephant/spade_src/LICENCE +include elephant/gpfa_src/INFO.md recursive-include elephant/spade_src *.so *.pyd include elephant/test/spike_extraction_test_data.txt recursive-include doc * diff --git a/doc/reference/gpfa.rst b/doc/reference/gpfa.rst new file mode 100644 index 000000000..62472a011 --- /dev/null +++ b/doc/reference/gpfa.rst @@ -0,0 +1,6 @@ +========================================= +`GPFA` - Gaussian-process factor analysis +========================================= + +.. automodule:: elephant.gpfa + :members: diff --git a/doc/release_notes.rst b/doc/release_notes.rst index e25c21007..d92766243 100644 --- a/doc/release_notes.rst +++ b/doc/release_notes.rst @@ -2,6 +2,38 @@ Release Notes ************* +Elephant 0.6.4 release notes +============================ + +This release has been made for the "1st Elephant User Workshop" (https://www.humanbrainproject.eu/en/education/participatecollaborate/infrastructure-events-trainings/1st-elephant-user-workshop-accelerate-structured-and-reproducibl). + + +Main features +------------- +* neo v0.8.0 compatible + + +New modules +----------- +* GPFA - Gaussian-process factor analysis - dimensionality reduction method for neural trajectory visualization (https://github.com/NeuralEnsemble/elephant/pull/233). _Note: the API could change in the future._ + + +Buf fixes +--------- +* [signal processing] Keep `array_annotations` in the output of signal processing functions (https://github.com/NeuralEnsemble/elephant/pull/258). +* [SPADE] Fixed the calculation of the duration of a pattern in the output (https://github.com/NeuralEnsemble/elephant/pull/254). +* [statistics] Fixed automatic kernel selection yields incorrect values (https://github.com/NeuralEnsemble/elephant/pull/246). + + +Improvements +------------ +* Vectorized `spike_time_tiling_coefficient()` function - got rid of a double for-loop (https://github.com/NeuralEnsemble/elephant/pull/244) +* Reduced the number of warnings during the tests (https://github.com/NeuralEnsemble/elephant/pull/238). +* Removed unused debug code in `spade/fast_fca.py` (https://github.com/NeuralEnsemble/elephant/pull/249). +* Improved doc string of `covariance()` and `corrcoef()` (https://github.com/NeuralEnsemble/elephant/pull/260). + + + Elephant 0.6.3 release notes ============================ July 22nd 2019 diff --git a/elephant/VERSION b/elephant/VERSION index a0a15177f..eb514eba8 100644 --- a/elephant/VERSION +++ b/elephant/VERSION @@ -1 +1 @@ -0.6.3 \ No newline at end of file +0.6.4 \ No newline at end of file