diff --git a/R/iSEEnrich.R b/R/iSEEnrich.R index 6c726af..03f1f1e 100644 --- a/R/iSEEnrich.R +++ b/R/iSEEnrich.R @@ -37,8 +37,8 @@ #' GO_collection <- "GO" #' Mm_organism <- "org.Mm.eg.db" #' gene_id <- "SYMBOL" -#' clusters <- "Primary.Type" -#' groups <- "Secondary.Type" +#' clusters <- "stimulus" +#' groups <- "single cell quality" #' reddim_type <- "PCA" #' results <- iSEEnrich(sce = sce, #' collection = GO_collection, diff --git a/man/iSEEnrich.Rd b/man/iSEEnrich.Rd index ddfb1a0..7a49091 100644 --- a/man/iSEEnrich.Rd +++ b/man/iSEEnrich.Rd @@ -51,8 +51,8 @@ sce <- scater::runPCA(sce) GO_collection <- "GO" Mm_organism <- "org.Mm.eg.db" gene_id <- "SYMBOL" -clusters <- "Primary.Type" -groups <- "Secondary.Type" +clusters <- "stimulus" +groups <- "single cell quality" reddim_type <- "PCA" results <- iSEEnrich(sce = sce, collection = GO_collection,