diff --git a/content/NWFSC-petrale.qmd b/content/NWFSC-petrale.qmd index 24ee3de..c0ac3cd 100644 --- a/content/NWFSC-petrale.qmd +++ b/content/NWFSC-petrale.qmd @@ -275,7 +275,6 @@ population$ages <- ages population$nfleets <- 2 # fleets plus surveys population$nseasons <- nseasons population$nyears <- nyears -# population$proportion_female <- rep(0.5, nages) population$SetMaturity(maturity$get_id()) population$SetGrowth(ewaa_growth$get_id()) diff --git a/content/PFISC-opakapaka.r b/content/PFISC-opakapaka.r index 01d1edf..e31fefe 100644 --- a/content/PFISC-opakapaka.r +++ b/content/PFISC-opakapaka.r @@ -237,7 +237,6 @@ population$ages <- ages population$nfleets <- 2 # fleet plus surveys population$nseasons <- 1 population$nyears <- nyears -# population$proportion_female <- rep(0.5, nages) population$SetMaturity(maturity$get_id()) population$SetGrowth(ewaa_growth$get_id()) diff --git a/content/SEFSC-scamp.qmd b/content/SEFSC-scamp.qmd index bd28b8e..3a9bddb 100644 --- a/content/SEFSC-scamp.qmd +++ b/content/SEFSC-scamp.qmd @@ -370,7 +370,6 @@ population$log_M <- population$estimate_M <- FALSE population$log_init_naa <- log(sca$N.age[1, ]) population$estimate_init_naa <- FALSE -# population$proportion_female <- rep(1.0,nages) #For scamp, assuming all females (see maturity note above) population$nages <- nages population$ages <- ages population$nfleets <- 3 # 2 fleets and 1 survey @@ -713,8 +712,8 @@ if ```FIMS::m_landings``` took fleet as an argument, similar to ```FIMS::m_ageco ## List any issues that you ran into or found -The FIMS feature to assign proportion female at age is not yet functional. FIMS accepts proportion female at age -as input, but does not use that input and instead hard-codes a 50:50 sex ratio. Many stocks +The FIMS feature to assign proportion female at age is not yet functional and +it is hard-coded using a 50:50 sex ratio. Many stocks in the southeast are protogynous hermphrodites, such that individuals start life as females and later convert to males. This life history creates a sex ratio that is tilted toward females for younger ages and males for older ages. diff --git a/content/SWFSC-sardine.qmd b/content/SWFSC-sardine.qmd index 379f833..a2a0b83 100644 --- a/content/SWFSC-sardine.qmd +++ b/content/SWFSC-sardine.qmd @@ -378,7 +378,6 @@ population$ages <- ages population$nfleets <- 2 # fleets plus surveys population$nseasons <- nseasons population$nyears <- nyears -# population$proportion_female <- rep(0.5, nages) population$SetMaturity(maturity$get_id()) population$SetGrowth(ewaa_growth$get_id()) diff --git a/content/sardine_fims.R b/content/sardine_fims.R index 9147312..5715940 100644 --- a/content/sardine_fims.R +++ b/content/sardine_fims.R @@ -566,7 +566,6 @@ population$ages <- ages population$nfleets <- 2 # fleets plus surveys population$nseasons <- nseasons population$nyears <- nyears -# population$proportion_female <- rep(0.5, nages) population$SetMaturity(maturity$get_id()) population$SetGrowth(ewaa_growth$get_id()) @@ -813,7 +812,6 @@ population$ages <- ages population$nfleets <- 2 # fleets plus surveys population$nseasons <- nseasons population$nyears <- nyears -# population$proportion_female <- rep(0.5, nages) population$SetMaturity(maturity$get_id()) population$SetGrowth(ewaa_growth$get_id())