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GitHub Issue NOAA-EMC/GSI#28. regression test for aerosol impacts on radiance. #32

Merged
merged 1 commit into from
Jul 28, 2020
Merged

GitHub Issue NOAA-EMC/GSI#28. regression test for aerosol impacts on radiance. #32

merged 1 commit into from
Jul 28, 2020

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weiwilliam
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Add a regression test for aerosol impacts on radiance and bugfix for reading the external aerosol file.

Please see issue #28 for more detail

CoryMartin-NOAA
CoryMartin-NOAA reviewed Jul 9, 2020
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Couple of initial comments. I will try building and running the regression test tomorrow on Hera.

regression/regression_var.sh Outdated
@@ -122,7 +123,7 @@ case $machine in

export fixcrtm="/scratch1/NCEPDEV/da/Michael.Lueken/CRTM_REL-2.2.3/crtm_v2.2.3/fix_update"
export casesdir="/scratch1/NCEPDEV/da/Michael.Lueken/noscrub/CASES"
export ndate=$NDATE
export ndate=${NDATE:-/scratch2/NCEPDEV/nwprod/NCEPLIBS/utils/prod_util.v1.1.0/exec/ndate}
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Is this necessary? Is prod_util not loaded by the regression tests?

regression/regression_var.sh Outdated
@@ -279,6 +283,7 @@ export gps_dtype="gps_bnd"
export regression_vfydir="$noscrub/regression"

# Define debug variable - If you want to run the debug tests, set this variable to .true. Default is .false.
#export debug=".true."
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Should this commented line be added?

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I believe it can be removed.
I added it just for convenience to switch in longer wall-time.

regression/global_C96_fv3aerorad.sh Outdated
esac

# Collect diagnostic files for obs types (groups) below
listall="modis_aod_terra modis_aod_aqua"
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Is this correct? I thought diag_aero was set to false in the namelist? Do we need to save diag files for other obs types?

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I also feel it's not needed section, because the script exit after the GSI finished, line 291.
Since this script is based on global_C96_fv3aero.sh, so I kept the section about diagnostic files.

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@weiwilliam you will also need to make changes to run the regression tests using CMake/ctest.

@MichaelLueken MichaelLueken changed the title regression test for aerosol impacts on radiance. GitHub Issue NOAA-EMC/GSI#28. regression test for aerosol impacts on radiance. Jul 28, 2020
@MichaelLueken MichaelLueken merged commit 13366a1 into NOAA-EMC:master Jul 28, 2020
@RussTreadon-NOAA RussTreadon-NOAA mentioned this pull request Jul 28, 2020
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RussTreadon-NOAA added a commit that referenced this pull request Jul 28, 2020
@RussTreadon-NOAA
Merge pull request #43 from NOAA-EMC/master
0c23b60 
Issue #2:  Update release/gfsda.v16.0.0 with master PR #32
@MichaelLueken MichaelLueken mentioned this pull request Jul 30, 2020
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RussTreadon-NOAA added a commit to RussTreadon-NOAA/GSI that referenced this pull request Oct 15, 2020
@RussTreadon-NOAA
GitHub Issue NOAA-EMC#2 merge release/gfsda.v16.0.0 at 1d3e30a into m…
8b8673e 
…aster

Squashed commit of the following:

commit 1d3e30a844c163224bb2ab81bdb5234daabbc7ef
Author: russ.treadon <[email protected]>
Date:   Tue Oct 13 20:49:12 2020 +0000

    Issue #2:  fix runtime errors flagged by debug global_gsi.x - committed changes do not alter analysis results

commit 5d40197db645bc69e7f0bb48230832583f5e56d5
Merge: 89f85ed6 5c097753
Author: RussTreadon-NOAA <[email protected]>
Date:   Tue Oct 13 15:30:19 2020 -0400

    Merge pull request #71 from HaixiaLiu-NOAA/feature/gfsda.v16.0.0_bugfix

    bug fix for reading seviri asr data

commit 5c09775305492617c9abc302e38f223548105673
Author: Haixia Liu <[email protected]>
Date:   Fri Oct 9 18:39:16 2020 +0000

    bug fix for reading seviri asr data

commit 89f85ed60268e3ff535942b97ec8bc1b550d6f2b
Author: russ.treadon <[email protected]>
Date:   Tue Oct 6 10:11:23 2020 +0000

    Issue #2:  remove variables MPI3 and MPI3FLAG from ush/build_all_cmakes since not used

commit fb31aa6b941158ed1f77bdb080a571d2e1035092
Author: russ.treadon <[email protected]>
Date:   Thu Oct 1 18:40:29 2020 -0500

    Issue #2:  update modulefiles for various platforms (correct typos, cleanup, update versions)

commit 937cc3cc5d6c8d1a7601dafbde9eab3c9dad5a7c
Author: russ.treadon <[email protected]>
Date:   Thu Oct 1 19:16:40 2020 +0000

    Issue #2:  update wcoss_c and hera modulefiles to use GFS v16 versions

commit 2c901a4cefda8e53cb1bed64e090a55a8c4653ee
Author: russ.treadon <[email protected]>
Date:   Thu Oct 1 12:20:56 2020 +0000

    Issue #2:  update wcoss_c and wcoss-d modulefiles to use modules from nwprod

commit 5c12435def1802af367f6a98a3f775cac2ece5b9
Author: russ.treadon <[email protected]>
Date:   Wed Sep 30 21:10:55 2020 +0000

    Issue #2:  update modulefile.ProdGSI.wcoss_d to use modules from nwtest and prod

commit 54d22190d3c1dc6a45a2e7de5850c8f1f29b0f3a
Author: russ.treadon <[email protected]>
Date:   Tue Sep 29 21:07:34 2020 +0000

    Issue #2:  update fix submodule to point at DA_GFSv16_global_only at 928d56d8 (clean up fix/Big_Endian)

commit 00b24fd7ce98fc19b4dbf936d89bb9bacff10731
Author: russ.treadon <[email protected]>
Date:   Tue Sep 29 20:59:19 2020 +0000

    Issue #2:  miscellaneous clean up in preparation for gfsda.v16.0.0 code delivery

     * remove global jobs and scripts no longer used
     * rename nc_diag executables in accordance with WCOSS Implementation Standards
     * update gfsda.v16.0.0 release notes

commit 68f90db7e397ab78ff7bd5a1ca4e5624afc9de9c
Author: russ.treadon <[email protected]>
Date:   Mon Sep 28 16:54:25 2020 +0000

    Issue #2:  update fix submodule to point at DA_GFSv16_global_only at 243711ba

commit 8ad168482a5be02cc3ecdc6f1e65ab6872433fcf
Merge: 27e5f338 12533a82
Author: RussTreadon-NOAA <[email protected]>
Date:   Fri Sep 25 22:18:05 2020 -0400

    Merge pull request #65 from lbi2018/release/gfsda.v16.0.0.HDOB

    Release/gfsda.v16.0.0.hdob

commit 12533a827793b8165b0c2a026b3882bb7819a46e
Author: Li Bi <[email protected]>
Date:   Sat Sep 26 00:57:47 2020 +0000

    Fix for the array bound failure

commit cd19d37d6bb99a88ab0f77c36b606e71149eca5d
Author: Li Bi <[email protected]>
Date:   Fri Sep 25 15:40:36 2020 +0000

    292 to 213 update for gsimod.f90obsmod.F90 setupspd.f90

commit 9ae687b215c270da822a164f345c05542b934b54
Author: Li Bi <[email protected]>
Date:   Fri Sep 25 14:36:47 2020 +0000

    release/gfsda.v16.0.0.HDOB: global_convinfo.txt prepobs_errtable update

commit 9a883dff32058be997e20b84624bdaf290939eb8
Merge: faf08e2d 27e5f338
Author: Li Bi <[email protected]>
Date:   Fri Sep 25 13:31:28 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into release/gfsda.v16.0.0.HDOB

    Conflicts:
    	fix

commit faf08e2d6787f252704c4e5094463e836851dc9b
Author: Li Bi <[email protected]>
Date:   Fri Sep 25 03:07:32 2020 +0000

    Replace 292 with 213 for the SFMR winds type change

commit 8541dc9f174767be6cbca1969df8b02908dbf082
Author: Li Bi <[email protected]>
Date:   Fri Sep 25 02:43:15 2020 +0000

    Add conv_spd to exglobal_diag file

commit a801f3b318ca254f8c2bc648eec9d3e0763617f4
Merge: 43962b08 6587af79
Author: Li Bi <[email protected]>
Date:   Fri Sep 25 02:27:15 2020 +0000

    Merge remote-tracking branch 'origin/release/gfsda.v16.0.0.HDOB' into release/gfsda.v16.0.0.HDOB

commit 43962b08f755d4b6110e8579f77634e14790ae3e
Merge: 96996100 30e24ea3
Author: Li Bi <[email protected]>
Date:   Tue Sep 22 14:43:02 2020 +0000

    Merge remote-tracking branch 'origin/release/gfsda.v16.0.0.HDOB' into release/gfsda.v16.0.0.HDOB

commit 27e5f338e10ddeea48c042c7b20dc515f0d17fd6
Author: russ.treadon <[email protected]>
Date:   Thu Sep 24 19:22:50 2020 +0000

    Issue #2:  update libsrc to branch DA-FV3-IMPL-empty at commit e3cb6fc

commit 78bc54a8848854f786a0c4388a99a43c13c6aaae
Author: russ.treadon <[email protected]>
Date:   Thu Sep 24 19:08:32 2020 +0000

    Issue #2:  update fix/prepobs_errtable.global (set obs type 260 uv error to 0.10000E+10)

commit 28d7f6af96351031324b80d3fbbd1bcb18fe9d54
Merge: aa09b386 b2458c9d
Author: RussTreadon-NOAA <[email protected]>
Date:   Thu Sep 24 13:27:38 2020 -0400

    Merge pull request #63 from ilianagenkova/feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr

    Added a NC005091 (VIIRS winds in new BUFR) bug fix into feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr

commit b2458c9d0e71d35cbdfec486989e3a7c0df22d78
Author: Iliana Genkova <[email protected]>
Date:   Thu Sep 24 12:01:57 2020 -0400

    Remove a comment sign

commit 6767d45c7c66e470b1314d659d8ecede73c63eff
Author: Iliana Genkova <[email protected]>
Date:   Thu Sep 24 12:00:26 2020 -0400

    Manually bringing read_satwnd.f90 to its ca5596cd content

commit f5e6a370fae9fe945e08d3a71b23e7513059f4fa
Merge: e629d77d 26a62d00
Author: Iliana Genkova <[email protected]>
Date:   Thu Sep 24 11:54:04 2020 -0400

    Merge branch 'feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr' of github.com:ilianagenkova/GSI into feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr

commit e629d77db284b9c10ec64a1e7e835923a133d112
Merge: bbbd5fb3 aa09b386
Author: Iliana Genkova <[email protected]>
Date:   Thu Sep 24 11:51:08 2020 -0400

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr

commit bbbd5fb358c4dabf09522578736371e490eaa3b4
Author: Iliana Genkova <[email protected]>
Date:   Thu Sep 24 11:50:21 2020 -0400

    Commit after reset ca5596cd

commit 26a62d00d5cea0dd2eec4bffeafc2e70ef49b452
Merge: 1fcf9115 aa09b386
Author: Iliana Genkova <[email protected]>
Date:   Wed Sep 23 22:32:41 2020 -0400

    Allign with release/gfsda.v16.0.0

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr

commit aa09b386c14c56edbec61d4e5153ce9d2b7fb77f
Author: russ.treadon <[email protected]>
Date:   Wed Sep 23 18:05:15 2020 +0000

    Issue #2:  various updates in preparation for code delivery

     * scripts/exgdas_enkf_fcst.sh - update name of forecast model script
     * scripts/exglobal_diag.sh - remove GDASRADSTAT dbn_alert
     * src/gsi/correlated_obsmod.F90 - limit diagnostic printout to single task
     * src/ncdiag/ncdw_chaninfo.F90 - comment out diagnostic print
     * src/ncdiag/ncdw_data2d.F90 - comment out diagnostic print

commit 1fcf9115f9e19aafb9936db04992b39b81112480
Author: Iliana Genkova <[email protected]>
Date:   Wed Sep 23 11:13:50 2020 -0400

    VIIRS AMVs fix reverted, waiting till v16.*

commit 6587af79ff3647a32e618a97eec84ef8cb870294
Merge: 96996100 30e24ea3
Author: Li Bi <[email protected]>
Date:   Tue Sep 22 14:43:02 2020 +0000

    Merge remote-tracking branch 'origin/release/gfsda.v16.0.0.HDOB' into release/gfsda.v16.0.0.HDOB

commit 9699610060f1e09a7ddc94dc991adc6fbea90765
Merge: 3fb6e05d fc8a83fc
Author: [email protected] <[email protected]>
Date:   Mon Sep 21 20:03:00 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into release/gfsda.v16.0.0.HDOB

commit 30e24ea34acf0b934819b30ea03eccb6290340a4
Merge: 3fb6e05d fc8a83fc
Author: [email protected] <[email protected]>
Date:   Mon Sep 21 20:03:00 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into release/gfsda.v16.0.0.HDOB

commit ca5596cd3a4e470e6cf45dfc97d5b75fa0341b08
Author: Iliana Genkova <[email protected]>
Date:   Fri Sep 18 18:51:41 2020 -0400

    Comment out the WARNING message for itype=-1

commit c049983022bc3e263410a7834d7e9ce363261580
Merge: f227e5cb fc8a83fc
Author: Iliana Genkova <[email protected]>
Date:   Fri Sep 18 18:42:50 2020 -0400

    Add dbn_alert updates ( release/gfsda.v16.0.0 @ fc8a83f )

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr

commit fc8a83fc7cb395a6acd16699d5ed399bbf7ab712
Author: russ.treadon <[email protected]>
Date:   Fri Sep 18 15:35:01 2020 +0000

    Issue #2:  update dbn_alert after consultation with NCO Dataflow

commit 3fb6e05d2b8a6369c19ed02685bed8626ebd11e9
Merge: b9e7d309 a8a01b86
Author: [email protected] <[email protected]>
Date:   Fri Sep 18 14:30:19 2020 +0000

    Complete gfsda.v16.0.0.HDOB fix update

commit b9e7d309c1ac20abede1a84dfc29c64025308c8b
Author: [email protected] <[email protected]>
Date:   Fri Sep 18 13:41:44 2020 +0000

    HDOB GSI code update and script change

commit f227e5cbc29904fe3a4bfc527a434421967e990f
Author: Iliana Genkova <[email protected]>
Date:   Thu Sep 17 19:58:11 2020 -0400

    Add a catch for unassigned itype==-1

commit 5e45e270e866b7e1f6f70c2a1d7c655b7f017bcb
Merge: f3b51bcf a8a01b86
Author: Iliana Genkova <[email protected]>
Date:   Thu Sep 17 11:36:12 2020 -0400

    Updating with v16 gpsro changes
    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr

commit f3b51bcfcd534b19ca8f6a02a22385ccb4af67a3
Author: Iliana Genkova <[email protected]>
Date:   Wed Sep 16 15:34:58 2020 -0400

    Fixed SatID range check for NC005091 winds (VIIRS in new BUFR)

commit c74f67ebfd5d14921b3319c4252acae93053571c
Author: Iliana Genkova <[email protected]>
Date:   Wed Sep 16 15:30:02 2020 -0400

    Point /fix to  0c4d01

commit a8a01b8623ac03c727df619231cc623fcc362d96
Author: russ.treadon <[email protected]>
Date:   Wed Sep 16 18:32:11 2020 +0000

    Issue #2:  update fix/global_convinfo.txt to assmilate metop-c (005) gps; add jacobian check to setupbend

commit 8ae556278194df3f61e58431144962b916f54e79
Author: Iliana Genkova <[email protected]>
Date:   Tue Sep 15 14:46:28 2020 -0400

    Add a fix for unassigned itype

commit c63b5ccb69c27165f09d5ac29a203c78601a3684
Merge: dc76ce7c 7c912139
Author: Iliana Genkova <[email protected]>
Date:   Tue Sep 15 14:22:35 2020 -0400

    Add NC* subsets for LeoGeo, new bufr EUMETSAT/Metop/AVHRR, and VIIRS winds
    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr

commit 7c9121399a135334951adcbaf0015b9e800572d6
Author: russ.treadon <[email protected]>
Date:   Tue Sep 15 14:32:45 2020 +0000

    Issue #2:  Update DA_GFSv16 fix/global_convinfo.txt to include LeoGeo AMVs (skip reading), add fix/gfsv16_historical/global_convinfo.txt.2020091512

commit 96eaeb99256e139ad7da76fab7aa7ae3ec2a5939
Merge: ad60bd66 56652c2f
Author: russ.treadon <[email protected]>
Date:   Tue Sep 15 13:20:30 2020 +0000

    Issue #2:  Merge branch 'master' at 56652c2 into release/gfsda.v16.0.0

commit ad60bd66b5bbe369fad8c5b7a5a809452b28390f
Author: russ.treadon <[email protected]>
Date:   Sat Sep 12 00:08:26 2020 +0000

    Issue #2:  update comments in DA scripts; correct typos in DA job and scripts

commit 73c8e1f8e1abdd00f49298de7abe5f2905cb29bb
Author: russ.treadon <[email protected]>
Date:   Fri Sep 11 16:42:20 2020 +0000

    Issue #2:  minor updates to enkf

     * src/enkf/gridio_gfs.f90 - initialize variable clip
     * src/enkf/readconvobs.f90 - split combined logical test into separate tests

commit e451bcc58924dd97da0800aa9dd6eb863616d123
Author: russ.treadon <[email protected]>
Date:   Fri Sep 11 13:37:19 2020 +0000

    Issue #2:  update name of scripts in j-jobs to be consistent with renamed scripts

commit 7b00841a6c6d37d6ff7d62f8ebdc3df9c036bdcb
Author: russ.treadon <[email protected]>
Date:   Fri Sep 11 13:20:32 2020 +0000

    Issue #2  rename jobs and scripts in accordance with WCOSS Implementation Standards

commit e474cf06de30d4a5fd8ca08a39f0542997caf3da
Author: russ.treadon <[email protected]>
Date:   Thu Sep 10 13:38:36 2020 +0000

    Issue #2:  add GFS DA v16.0.0 release notes

commit dc76ce7cca601c4fa1c9cb8608b7a76e7d068a9d
Author: Iliana Genkova <[email protected]>
Date:   Tue Sep 8 17:42:29 2020 -0400

    Add BUFR 03-10-077 changes for Metop/AVHRR AMVs from NESDIS

commit 25e79078ab0893c119ab02d131e41a7ce44421eb
Author: Iliana Genkova <[email protected]>
Date:   Tue Sep 8 13:24:32 2020 -0400

    Add BUFR 03-10-077 changes for EUMETSAT

commit 0bd8d699150cdf9fb0b6f5bf8ac5b243698ee1bb
Author: russ.treadon <[email protected]>
Date:   Fri Sep 4 20:54:42 2020 +0000

    Issue #2:  add prep_step and missing file checks in accordance with WCOSS Implementation Standards

commit 7580ab99cb2eb7b3e51fff9aa20e2a4c3531798d
Author: russ.treadon <[email protected]>
Date:   Tue Sep 1 19:51:44 2020 +0000

    Issue #2:  Remove redundant and unused variables in accordance with WCOSS Implementation Standards

commit fb50124bb4e12ecfdb3e6dd39d6059ab86eb3fc6
Merge: dce36030 85f38c0e
Author: russ.treadon <[email protected]>
Date:   Fri Aug 28 19:08:38 2020 +0000

    Issue #2:  Merge branch 'master' at 85f38c0 into release/gfsda.v16.0.0

commit dce36030faa97ba6285a00e57b43b543234dc55d
Author: russ.treadon <[email protected]>
Date:   Fri Aug 28 17:40:50 2020 +0000

    Issue #2:  update variables in jobs/ and scripts/ to be consistent with global-workflow

commit 50bba81acd6df1bcee2272e0df7543d933f0871c
Author: russ.treadon <[email protected]>
Date:   Thu Aug 27 21:26:32 2020 +0000

    Issue #2:  remove APREFIX from DIAG_DIR path

commit 0ac5a57f1772cec3d6dc6d4e1143594f33bb2120
Author: russ.treadon <[email protected]>
Date:   Thu Aug 27 21:04:57 2020 +0000

    Issue #2:  remove ".ecf" from within monitoring jobs and exscripts as per WCOSS Implementation Standards

commit 9b0fb0e801c66ae2f6c988bc78e750868731ff60
Author: russ.treadon <[email protected]>
Date:   Thu Aug 27 20:59:37 2020 +0000

    Issue #2:  remove ".ecf" extension from monitoring job exscripts as per WCOSS Implementation Standards

commit 965549156d30195944a8c8c42931e2de27aa061e
Author: russ.treadon <[email protected]>
Date:   Thu Aug 27 20:35:07 2020 +0000

    Issue #2:  remove ".sms" and ".ecf" from within exscripts as per WCOSS Implementation Standards

commit 5c2e91454ae32ca04448b90ae48a091c6fd03e54
Author: russ.treadon <[email protected]>
Date:   Thu Aug 27 20:23:18 2020 +0000

    Issue #2:  remove ".ecf" extension from exscripts as per WCOSS Implementation Standards

commit dc5bddb535dca4ce6abde97ea9f21f36fbf62434
Author: russ.treadon <[email protected]>
Date:   Wed Aug 26 20:42:53 2020 +0000

    Issue #2:  rename script in JGDAS_CHGRES_FORENKF and exglobal_chgres_forenkf_fv3gfs.sh.ecf

commit 02ae2abab10db80dca7451d2fd34c3fd87e78c24
Author: russ.treadon <[email protected]>
Date:   Wed Aug 26 20:39:06 2020 +0000

    Issue #2:  Rename JGDAS_ENKF_CHGRES and exglobal_enkf_chgres_fv3gfs.sh.ecf as per EE2 guidance

commit df2581cec06ec55fc83175bf2114a051712276b0
Merge: 6724c131 52f9e5cf
Author: RussTreadon-NOAA <[email protected]>
Date:   Wed Aug 26 11:33:15 2020 -0400

    Merge pull request #54 from CoryMartin-NOAA/feature/enkf_chgres

    Change gdasechgres namelist for new version of enkf_chgres_recenter_ncio

commit 52f9e5cfc75c40842f2b142b90c727ccce50fdd8
Author: Cory Martin <[email protected]>
Date:   Tue Aug 25 14:03:01 2020 -0400

    Change gdasechgres namelist for new version of enkf_chgres_recenter_ncio

commit 6724c1315654f259ba4eeeb22fd09f3e9190a58b
Author: russ.treadon <[email protected]>
Date:   Sat Aug 22 12:36:44 2020 +0000

    Issue #2:  remove incorrect "." from dbn_alert in exglobal_enkf_fcst_fv3gfs.sh.ecf

commit ca4b59c1f596ec3a9c7232ef267e3c4f6f243db6
Merge: 6f58682a 5fd6b23e
Author: RussTreadon-NOAA <[email protected]>
Date:   Wed Aug 19 09:12:01 2020 -0400

    Merge pull request #39 from KateFriedman-NOAA/release/gfsda.v16.0.0-restructure

    Release/gfsda.v16.0.0 restructure

commit 5fd6b23e85aacaf348dd3560c3e7b253a6dd7d3a
Merge: 283ab3ac 6f58682a
Author: Kate.Friedman <[email protected]>
Date:   Mon Aug 17 17:16:14 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into release/gfsda.v16.0.0-restructure

    * upstream/release/gfsda.v16.0.0:
      Add in some useful print statements

commit 6f58682afd245568e63c730ca6e661552ab8bcf4
Merge: 0c23b60a e8b1459d
Author: RussTreadon-NOAA <[email protected]>
Date:   Mon Aug 10 14:47:49 2020 -0400

    Merge pull request #50 from CoryMartin-NOAA/feature/calcanl_print

    Add in some useful print statements

commit e8b1459de5df22a9d97a0a028618c43364dcf0fa
Author: Cory Martin <[email protected]>
Date:   Mon Aug 10 12:50:43 2020 -0400

    Add in some useful print statements

    Add print statements if increment or ensemble guess files are missing but IAUFHRS says it should be there.

commit 283ab3acb4a5f34a869a8eba7349b9457515ddc0
Merge: b53db5de 0c23b60a
Author: kate.friedman <[email protected]>
Date:   Wed Jul 29 14:31:24 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into release/gfsda.v16.0.0-restructure

commit 0c23b60aec3848149b9d6ae27a77906c85a6cabd
Merge: 9fca7b3c 13366a1a
Author: RussTreadon-NOAA <[email protected]>
Date:   Tue Jul 28 10:29:02 2020 -0400

    Merge pull request #43 from NOAA-EMC/master

    Issue #2:  Update release/gfsda.v16.0.0 with master PR #32

commit b53db5deac8c98418798b72041601b1936e48cb6
Merge: aff4da8b 9fca7b3c
Author: kate.friedman <[email protected]>
Date:   Thu Jul 23 13:35:21 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into release/gfsda.v16.0.0-restructure

commit aff4da8b604fde8918ca68bed1fea8c3ff069c0b
Author: kate.friedman <[email protected]>
Date:   Thu Jul 23 13:34:11 2020 +0000

    Small text fix in JGDAS_VMINMON

commit 9fca7b3c7b8301f60a1860703e1d104b7689d97e
Author: russ.treadon <[email protected]>
Date:   Thu Jul 23 11:09:23 2020 +0000

    Issue #2:  refactor CFP in scripts to better support LSF and SLURM

commit 263c10aa1541c2913c0dee5ed48eeeb33b0fb5fc
Merge: 15f35da2 3eef0732
Author: kate.friedman <[email protected]>
Date:   Wed Jul 22 15:23:57 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into release/gfsda.v16.0.0-restructure

commit 3eef073293bcfa9c641bde3c5549621dbebea0a0
Author: russ.treadon <[email protected]>
Date:   Tue Jul 21 18:27:48 2020 +0000

    Issue #2:  remove obsolete modulefiles/4.7.4

commit 15f35da215d2f1d59784e5bc5b2256fa02587d64
Merge: f6bc0f6a 29bd66fd
Author: kate.friedman <[email protected]>
Date:   Mon Jul 20 14:39:52 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into release/gfsda.v16.0.0-restructure

commit 29bd66fd0c8e54783c25ee863fcf2575678ebbe9
Author: russ.treadon <[email protected]>
Date:   Mon Jul 20 14:08:16 2020 +0000

    Issue #2:  update modulefile.ProdGSI.wcoss_c to use netcdf/4.7.4 and parallel hf5

commit e0327d3f6f84a81349ab5bd1291b5380f846040c
Merge: 72b4c012 adbdbdd6
Author: RussTreadon-NOAA <[email protected]>
Date:   Mon Jul 20 10:00:11 2020 -0400

    Merge pull request #38 from kgerheiser/wcoss-fixed-cmake-build

    Issue #2:  merge kgerheiser/wcoss-fixed-cmake-build into base repo release/gfsda.v16.0.0.

commit f6bc0f6a010b0606bf6003f14872fb3ddc80f96f
Author: kate.friedman <[email protected]>
Date:   Thu Jul 16 17:46:58 2020 +0000

    Add  variable to JJOB and ex scripts for new atmos subdirectory

commit adbdbdd66dbd139f6f477a7a9efbcd0df58d1de2
Author: kgerheiser <[email protected]>
Date:   Thu Jul 16 16:48:35 2020 +0000

    Fixes for link order and missing libraries

commit 72b4c012db4b82b1fd6bf9257bb8075b9f2b2e86
Merge: c4f6dc19 6e815576
Author: RussTreadon-NOAA <[email protected]>
Date:   Wed Jul 15 11:24:49 2020 -0400

    Merge pull request #36 from EdwardSafford-NOAA/release/gfsda.v16.0.0

    Add fixes to OznMon.

commit 6e815576f24d22a62c3bd69065dcc52af4a6af03
Author: Edward.Safford <[email protected]>
Date:   Wed Jul 15 14:13:42 2020 +0000

    Add fixes to OznMon.

commit 422b62c750d02141a27f9b796ebd39dfc855f30c
Author: kgerheiser <[email protected]>
Date:   Tue Jul 14 21:10:35 2020 +0000

    Fixes for GSI so that it can build on WCOSS Cray

commit c4f6dc19b79f4e43052b97bfd1a3e226bbb0aeeb
Merge: 19bcabc3 06b99b7e
Author: RussTreadon-NOAA <[email protected]>
Date:   Tue Jul 14 15:35:53 2020 -0400

    Merge pull request #35 from CoryMartin-NOAA/bugfix/calcanl

    Bugfix for incorrect function call when IAU is off

commit 06b99b7ef8483ab2b247110afe1a056e72ec8a15
Author: Cory Martin <[email protected]>
Date:   Tue Jul 14 14:55:53 2020 -0400

    Bugfix for incorrect function call when IAU is off

commit 19bcabc3cb48fac7e57702d5a5080a5a8c90a4ea
Author: russ.treadon <[email protected]>
Date:   Thu Jul 9 14:26:52 2020 -0500

    Issue #2:  update modulefiles/modulefile.ProdGSI.orion to load w3emc/2.4.0

commit a0ef7d3d582b1092a8915895d58683abece0baee
Merge: bbdaf21b d74bc03b
Author: russ.treadon <[email protected]>
Date:   Wed Jul 1 16:58:55 2020 +0000

    Issue #2:  merge branch 'master' at d74bc03 into release/gfsda.v16.0.0

commit bbdaf21b3f573229ce8f583df99940e1c3a9d40d
Author: russ.treadon <[email protected]>
Date:   Wed Jul 1 13:41:02 2020 +0000

    Issue #2:  replace ERROR with WARNING in tcv_mod.f90 runtime printout

commit a1f83ecb47e745cd1d9a1dd00c8620c1cf3bdaa9
Merge: 947d7843 ef6f4746
Author: RussTreadon-NOAA <[email protected]>
Date:   Thu Jun 18 15:54:03 2020 -0400

    Merge pull request #21 from CoryMartin-NOAA/feature/gdaschgres

    Feature/gdaschgres

commit 947d7843a37af36d804c8e4203746e1bfb740dc0
Merge: 63d9f196 fcec2a92
Author: russ.treadon <[email protected]>
Date:   Wed Jun 17 18:12:36 2020 +0000

    Issue #2:  merge branch 'master' at fcec2a9 into release/gfsda.v16.0.0

commit ef6f474692e572e80ca6702ba41128730fce672d
Author: russ.treadon <[email protected]>
Date:   Tue Jun 16 20:24:05 2020 +0000

    Issue NOAA-EMC#8:  rename JGLOBAL_CHGRESFCST and exglobal_chgresfcst_fv3gfs.sh.ecf

commit 63d9f196b9f8d9810d3aae20b285b668c40e1437
Merge: e9e717af 93cd14b9
Author: russ.treadon <[email protected]>
Date:   Fri Jun 12 18:08:09 2020 +0000

    Issue #2:  merge branch 'master' at 93cd14b into release/gfsda.v16.0.0

commit e15074e1370266b18cfb8d35a20adca82e6b4c4a
Merge: ed9eab45 e9e717af
Author: CoryMartin-NOAA <[email protected]>
Date:   Thu Jun 11 20:13:16 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into feature/gdaschgres

commit e9e717afc203e4b25dcf7570a3ba0443a04a42d3
Merge: 54e178f5 58354d02
Author: RussTreadon-NOAA <[email protected]>
Date:   Thu Jun 11 14:45:56 2020 -0400

    Merge pull request #11 from CoryMartin-NOAA/bugfix/contrib_hera

    Hotfix to allow for contrib modules to still load on Hera

commit 58354d02fe441b3e3ef4a9962fd6038c47122cad
Author: CoryMartin-NOAA <[email protected]>
Date:   Thu Jun 11 18:36:02 2020 +0000

    Hotfix to allow for contrib modules to still load on Hera after change from admins

commit ed9eab45d962070eceb073b5e51675f9cd40eabe
Author: CoryMartin-NOAA <[email protected]>
Date:   Thu Jun 11 18:14:21 2020 +0000

    Fix Hera modulefile for contrib changes

commit 685589834199fb10e5eff13c752771e6d3840c0a
Merge: 7d1b2948 54e178f5
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Jun 10 21:18:22 2020 +0000

    Merge branch 'release/gfsda.v16.0.0' into feature/gdaschgres

commit 7d1b29488b3c354f1cdcea0094e5713136a092d1
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Jun 10 20:49:00 2020 +0000

    Changes from debugging addition of chgresfcst on hera

commit f828de84bad1eda9191aac3aa1fbd2756f4fea74
Author: Cory Martin <[email protected]>
Date:   Tue Jun 9 16:45:27 2020 -0400

    Renamed script; created j-job for chgresfcst

commit 99350edc1a9427d3bcf80d6c4fd1e4478fb275e0
Author: Cory Martin <[email protected]>
Date:   Tue Jun 9 16:34:55 2020 -0400

    First draft of exglobal_chgres_fcst.sh.ecf

commit dd969e633930ac8d9e1fafb6a55bce65dea3078c
Author: Cory Martin <[email protected]>
Date:   Mon Jun 8 17:36:55 2020 -0400

    change ln -s print

commit 3df7c5b28052b5ac805d1e4a412302371fd3f09c
Author: Cory Martin <[email protected]>
Date:   Mon Jun 8 17:33:31 2020 -0400

    Fix issue with indentation in getncdimlens

commit 60a65fe533c7fe54a8c0019716b8b83dfce1a66d
Author: Cory Martin <[email protected]>
Date:   Mon Jun 8 17:22:10 2020 -0400

    fix missing import os

commit f91866710b059aa2cebac2e130ec433e33353c1c
Author: Cory Martin <[email protected]>
Date:   Mon Jun 8 17:04:04 2020 -0400

    Fix some indentation in calcanl_gfs.py

commit c12c96298249662ae1d7c4ac9d9cbfb518ac2019
Author: Cory Martin <[email protected]>
Date:   Mon Jun 8 15:37:13 2020 -0400

    Add print to gsi_utils; 4 spaces for calcanl_gfs

    Changed to 4 spaces instead of 2 to conform to Python coding norms for calcanl_gfs.py; removed capability to run chgres in calcanl_gfs.py; add print statements to gsi_utils for link, copy, mkdir; create chgres ex script from analcalc

commit 54e178f59df7e608929048050577f511c4aa147a
Author: russ.treadon <[email protected]>
Date:   Wed Jun 3 20:02:45 2020 +0000

    Issue #2:  updates to streamline and add flexibility

    * jobs/JGLOBAL_ENKF_ANALDIAG - source config.analdiag

    * scripts/exglobal_analdiag_fv3gfs.sh.ecf - add option to remove DIAG_DIR

    * src/gsi/obsmod.F90 - add -p to mkdir command

commit b3c6b668272795589d0a9f06d5d402a9fb3f0011
Merge: 6a9b5244 c489ff43
Author: russ.treadon <[email protected]>
Date:   Thu May 28 17:48:06 2020 +0000

    Vlab issue #65376:  merge branch 'master' at commit:fa0e592c into feature/parallel_ncio

commit 6a9b5244528767a19e891b59725c079b6d5a4006
Merge: 10741d5b 663f28ed
Author: Edward.Safford <[email protected]>
Date:   Tue May 26 13:36:17 2020 +0000

    Merge branch 'feature/parallel_ncio' of ssh://vlab.ncep.noaa.gov:29418/ProdGSI into feature/parallel_ncio

commit 10741d5bf39bd2eeae23a3ec436515a5702d55f3
Author: Edward.Safford <[email protected]>
Date:   Tue May 26 13:31:06 2020 +0000

    Update setupt.f90 adding missing
    Data_Vertical_Velocity field to NetCDF
    formatted diagnostic files.

    Change-Id: Ibe792738deb071e3e8b99118f395a8ad1bf21a61

commit 663f28ed10cd77f6016c729d2d013692144ba5d6
Author: russ.treadon <[email protected]>
Date:   Tue May 26 13:16:33 2020 +0000

    Vlab issue #65376: update to fix to point at DA_GFSv16 at commit:f0f7447f

     * global_convinfo.txt - assimilate COSMIC-2 and and monitor commercial GNSSRO
     * gfsv16_historical/global_satinfo.txt.2020052612 - assimilate COSMIC-2 and and monitor commercial GNSSRO
     * gfsv16_historical/global_satinfo.txt.2019021900 - update CrIS H2O observation and gross errors
     * gfsv16_historical/global_satinfo.txt.2019110706 - update CrIS H2O observation and gross errors
     * gfsv16_historical/global_satinfo.txt.2020022012 - update CrIS H2O observation and gross errors

commit 16bfc145ce5e592cc4eb0410da2e0f5e402973e0
Author: russ.treadon <[email protected]>
Date:   Sun May 24 13:10:55 2020 +0000

    Vlab issue #65376:  add logic to optionally compress diagnostic file created from a single task

commit 54cfbdb4dbf5b3fdf987b9fd679fca044b426586
Author: russ.treadon <[email protected]>
Date:   Thu May 21 23:35:40 2020 +0000

    Vlab issue #65376:  updates to process COSMIC-2 and commercial GNSSRO

commit 16fae83675238fde64a846e9cb69d512097b5d30
Author: russ.treadon <[email protected]>
Date:   Thu May 21 11:03:25 2020 +0000

    Vlab issue #65376:  additional source code updates from code review 21684, correct exglobal_analdiag_fv3gfs.sh.ecf bug

commit d73ad90b0d30898d71f61d5aa36fddce2474c8fe
Author: russ.treadon <[email protected]>
Date:   Wed May 20 00:19:23 2020 +0000

     Vlab issue #65376:  correct typo in scripts/exglobal_analysis_fv3gfs.sh.ecf

commit d9181d64819865edbcea13525a64a39d5c9491bb
Author: russ.treadon <[email protected]>
Date:   Tue May 19 22:46:30 2020 +0000

    Vlab issue #65376:  updates for code review 21684 and GFS v16 DA

commit be0a5c421b05421c02bb041e4266e32ea814ddb1
Author: jswhit2 <[email protected]>
Date:   Fri May 8 15:05:36 2020 +0000

    update interp_inc to use ipolatev for interpolation of u,v increments

commit 0038c050cc0b64079e18de46c0671b36706b0e71
Merge: 29c838b3 1b95607d
Author: CoryMartin-NOAA <[email protected]>
Date:   Fri May 8 15:03:05 2020 +0000

    Merge branch 'feature/parallel_ncio' of gerrit:ProdGSI into feature/parallel_ncio

commit 29c838b3f9f1d8ad26ce4447ba3eb15faf72089f
Author: CoryMartin-NOAA <[email protected]>
Date:   Fri May 8 15:03:01 2020 +0000

    Add in print of netCDF filename for errors to module_fv3gfs_ncio

commit 1b95607d5cac2987aa1573114fd75f1a1988b33d
Author: russ.treadon <[email protected]>
Date:   Fri May 8 11:35:23 2020 +0000

    Vlab issue #65376:  correct dpres latitude index in write_atm (netcdf analysis)

commit c520b5673b4e82e7f00800844735e74e3efac801
Author: russ.treadon <[email protected]>
Date:   Mon Apr 27 13:37:24 2020 +0000

    Vlab issue #65376:  add logic to check for and, if needed, remove DIAG_DIR prior to GSIEXEC executation

commit cc69dcfa90b8e55a41d862d5259053992a272fb6
Merge: 8ef7fd0a 0938cb5f
Author: russ.treadon <[email protected]>
Date:   Thu Apr 23 16:56:07 2020 +0000

    Vlab issue #65376:  Merge branch 'feature/enkf_increment' at commit:620fa23c into feature/parallel_ncio

commit 8ef7fd0add5a3a5e668383df6356ca6c66222a71
Author: Michael Lueken <[email protected]>
Date:   Thu Apr 23 16:41:35 2020 +0000

    VLab issue #65376: Address debug run issue for netdf_fv3_regional configuration.

commit 0938cb5f10ddb7b5bb0938f96c47c4a2855c40ca
Merge: 8b7c79e3 0b2c74b5
Author: russ.treadon <[email protected]>
Date:   Thu Apr 23 14:51:08 2020 +0000

    Merge branch 'feature/parallel_ncio' at commit:63fac121 into feature/enkf_increment

commit 8b7c79e3ff60fcbbefb55d80727ef23c7c828979
Author: jswhit2 <[email protected]>
Date:   Thu Apr 23 13:23:34 2020 +0000

    add barrier to prevent race condition on shared memory window

commit 8940866914db6025604175d0a4e8fe26c1ae0788
Author: russ.treadon <[email protected]>
Date:   Wed Apr 22 16:03:02 2020 +0000

    Update two exglobal_enkf scripts:

     * exglobal_enkf_recenter_fv3gfs.sh.ecf - check for existence of ensemble mean file prior to attempting to create file

     * exglobal_enkf_update_fv3gfs.sh.ecf - remove scripting to run ENKFEXEC task 0 on a single node

commit 0b2c74b5a4b827efd287022cd6dedca87a068686
Merge: 6dcc3003 005f50b1
Author: edward.safford <[email protected]>
Date:   Wed Apr 22 15:55:47 2020 +0000

    Merge branch 'feature/parallel_ncio'
    of ssh://vlab.ncep.noaa.gov:29418/ProdGSI
    into feature/parallel_ncio

commit 6dcc300385e795199cd91836f3b028be7b33c8a8
Author: edward.safford <[email protected]>
Date:   Wed Apr 22 15:54:22 2020 +0000

    Correct OznMon's read_diag.f90 to correctly
    handle levels.

    Change-Id: I55b89338857feacf14f9e60865e67b92a9fa280b

commit 005f50b146c0146667fbdf21421a35ccc4daaa11
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Apr 22 14:58:20 2020 +0000

    VLab issue #68133 - bugfix for parallel increment write on Hera/Orion

commit fd95cc9a547ff7886740d1e8d5ea3ec5be00c009
Author: jswhit2 <[email protected]>
Date:   Tue Apr 21 22:28:06 2020 +0000

    make sure shared memory window size is of type MPI_ADDRESS_KIND and > 0.

commit 987b7e765a7622496f5fadb0faf7232e983a26ea
Author: russ.treadon <[email protected]>
Date:   Tue Apr 21 10:40:24 2020 +0000

    Vlab issue #65376:  extend parallel processing of diagnostic files to slurm

commit c4cc8ea0b63a5e3276170e7a040e09022af2e370
Author: jswhit2 <[email protected]>
Date:   Mon Apr 20 20:51:02 2020 +0000

    revert changes from a172284a2311da2352ea10f8c99663d216ba82d3 (use of MPI_win_lock/unlock)

commit 1721c87c9f86191fa756cb731a90571853e66b74
Merge: 0a565f3f c52be726
Author: CoryMartin-NOAA <[email protected]>
Date:   Mon Apr 20 14:28:33 2020 +0000

    Merge branch 'feature/incr_metadata' into feature/enkf_increment

commit f014bac2125b870fca754bdd6de61fc81fb8fd05
Author: russ.treadon <[email protected]>
Date:   Mon Apr 20 11:20:31 2020 +0000

    Vlab issue #65376:  add analcalc and analdiag to list of config files to source in their respective j-jobs

commit 0a565f3ff06595d7fa8fe548e5e1835adb0ef35f
Author: jswhit2 <[email protected]>
Date:   Sat Apr 18 01:40:38 2020 +0000

    remove MPI3FLAG - no longer used

commit 6514f747f4b3e7b3c371b2ba91fc372e97495f85
Author: russ.treadon <[email protected]>
Date:   Thu Apr 16 11:28:15 2020 +0000

     Vlab issue #65376:  code review updates - (1) remove unused variables, (2) address debug run issues

commit fd91fe89d2d01f80a344dd3f0c71eaf8987a2966
Merge: a172284a 05e345de
Author: jswhit2 <[email protected]>
Date:   Mon Apr 13 20:03:02 2020 +0000

    Merge branch 'feature/enkf_increment' of gerrit:ProdGSI into feature/enkf_increment

commit a172284a2311da2352ea10f8c99663d216ba82d3
Author: jswhit2 <[email protected]>
Date:   Mon Apr 13 20:01:57 2020 +0000

    put lock around initialization of shared memory window

commit 5e870e8fd87c1be2fe470a6684f04e34a610fd86
Author: jswhit2 <[email protected]>
Date:   Mon Apr 13 20:01:38 2020 +0000

    make sure arrays are allocated before deallocating them

commit 05e345de7198c16bfc611948395d3b511fc9e13b
Merge: cf514cba 3a60c3cc
Author: russ.treadon <[email protected]>
Date:   Mon Apr 13 17:28:48 2020 +0000

    Merge branch feature/parallel_ncio at commit:0676a17d into feature/enkf_increment

commit cf514cba84469ba38492606cb75a42cde3a72f98
Author: jswhit2 <[email protected]>
Date:   Sun Apr 12 18:40:43 2020 +0000

    remove MPI3 CPPFLAG (now mandatory)

commit ade6fc8232a6cabd72f8d00745a2e11177f1ac3b
Author: jswhit2 <[email protected]>
Date:   Sat Apr 11 19:51:58 2020 +0000

    revert fix link

commit 8681cd9ec8ad2d4588e62901c9d97355a96ef8e9
Author: jswhit2 <[email protected]>
Date:   Sat Apr 11 16:35:31 2020 +0000

    revert libsrc hash

commit 0af7cf39ba50a4ae21ff09d74dd4d1b706cb6269
Author: jswhit2 <[email protected]>
Date:   Sat Apr 11 16:33:09 2020 +0000

    remove extra endif

commit 9b5fcf9d56df6a082ba252d8ba0982a698b5b45c
Author: jswhit2 <[email protected]>
Date:   Sat Apr 11 15:57:33 2020 +0000

    optimizations for creating and distributing obs prior ensemble

commit 3a60c3cc4a1d8fef62b7128f2f618deda4b20d30
Author: russ.treadon <[email protected]>
Date:   Fri Apr 10 16:09:16 2020 -0500

    Vlab issue #65376:  add missing cmake/Modules/platforms/Orion.cmake

commit af891f1566b3c51504dcc42eb9663b15b0d06659
Author: russ.treadon <[email protected]>
Date:   Fri Apr 10 15:18:01 2020 -0500

    Vlab issue #65376:  add Orion to cmake files

commit 1177fca6911d53c35040cebd1102b99c960b84cd
Merge: f11ca530 cef3a3e6
Author: russ.treadon <[email protected]>
Date:   Fri Apr 10 15:48:18 2020 +0000

    Merge branch feature/parallel_ncio at commit:c7aab51b into feature/enkf_increment

commit cef3a3e6ccd477dea5885b1d48450773065c93aa
Author: Cory Martin <[email protected]>
Date:   Fri Apr 10 10:36:31 2020 -0500

    Add 'stop 99' so netCDF errors will return non-zero exits

commit f11ca53017fa1d44f20f00fc798c6c825e03c4b4
Merge: 748ad023 ff1e0320
Author: russ.treadon <[email protected]>
Date:   Fri Apr 10 13:54:59 2020 +0000

    Merge branch feature/parallel_ncio at commit:e9669ac5 into feature/enkf_increment

commit ff1e0320a1d673882977a6a76f77275eb83d0d8b
Author: russ.treadon <[email protected]>
Date:   Thu Apr 9 20:17:06 2020 +0000

    Vlab issue #65376:  remove unnecessary lines from scripts/exglobal_enkf_recenter_fv3gfs.sh.ecf

commit 5b9bc119e1b1916cf4fe3320e1df415ea8b76db1
Author: russ.treadon <[email protected]>
Date:   Thu Apr 9 18:13:52 2020 +0000

    Vlab issue #65376: updates in preparation for GFS v15.2.12

     * scripts/exglobal_analysis_fv3gfs.sh.ecf - update ESCRISFS & CRISFSDB defaults and uncomment links

     * src/read_cris.f90 - changes to process new data feed (backward compatible with previous feed)

commit a84dc26a9e47714d7310a1b7dbe33249a15aa0f3
Merge: 3f2b353a 70bc69a5
Author: russ.treadon <[email protected]>
Date:   Wed Apr 8 21:09:02 2020 +0000

    Merge branch 'feature/parallel_ncio' of gerrit:ProdGSI into feature/parallel_ncio

commit 70bc69a5486e9ecb0ea8cb23b075ca8101ff5a74
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Apr 8 21:05:38 2020 +0000

    Bugfix for calcanl_gfs.py to work on either Python2 or Python3 for converting slurm nodelists to Python lists

commit 3f2b353a35d8a03a1354f151d0dd2a72eeeefbf7
Author: russ.treadon <[email protected]>
Date:   Wed Apr 8 21:05:22 2020 +0000

    Vlab issue #76037:  update DA_GFSv16 fix to be consistent with gfs.v15.2.11

    * fix/gfsv16_historical/global_convinfo.txt.2020040718 - same as global_convinfo.txt below

    * fix/gfsv16_historical/prepobs_errtable.global.2020040718 - same as prepobs_errtable.global below

    * fix/global_convinfo.txt - assimilate 135/235 (Candian AMDAR)

    * fix/prepobs_errtable.global - set observation errors for 135/235

commit fbc3503d2ccd8531db98d1eb8d6b984008f38b35
Author: russ.treadon <[email protected]>
Date:   Wed Apr 8 11:13:49 2020 -0500

    Vlab issue #65376:  use /home/cmartin/opt/modulefiles to load anaconda/anaconda3-2020.04.02 in modulefile.ProdGSI.orion

commit 3baa0f64cf2fe5573e72a5cace9a3e5cb97838c2
Author: russ.treadon <[email protected]>
Date:   Wed Apr 8 10:29:23 2020 -0500

    Vlab issue #65376:  update modulefiles/modulefile.ProdGSI.orion to load anaconda/anaconda3-2020.04.02

commit 01d59c9e6a8342c4af0257ece5bbce61844ec6fc
Author: russ.treadon <[email protected]>
Date:   Mon Apr 6 15:54:14 2020 +0000

    Vlab issue #65376:  add modulefile for orion, add orion to build_all_cmake.sh

commit 970582ce1201233c0f95f4a7f6a8ea45b220b0a1
Author: russ.treadon <[email protected]>
Date:   Fri Apr 3 19:39:11 2020 +0000

    Vlab issue #65376:  change hsst from 600 to 100 in L127 global_berror files

commit ea6f70ff3a870353e9805b1748f5fdb2aeb82034
Author: russ.treadon <[email protected]>
Date:   Wed Apr 1 22:51:36 2020 +0000

    Vlab issue #65376:  change declaration and printout of variable filename for FV3CAM_SAR

commit c52be726f78ee00fe5e4bf1a5ac170ffa6d0a9be
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Apr 1 21:18:35 2020 +0000

    #76442 - added additional metadata to GSI/EnKF increment files to know analysis/valid time

commit 748ad023f79ff517e70b583bace9dab930ca3c21
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Apr 1 16:25:57 2020 +0000

    #69740 fixed bug in calc_increment_ens_ncio that caused liq_wat_inc to not zero out; tested

commit 96ffa45f585833fb1a7de7a5b8bb93262b16155d
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Apr 1 15:55:52 2020 +0000

    #69740 fixed bug in calc_increment_ens_ncio that caused liq_wat_inc to not zero out

commit d45f6f8268f370abd463eb8985597a934da1448e
Author: CoryMartin-NOAA <[email protected]>
Date:   Tue Mar 31 18:29:13 2020 +0000

    #76442 - add in psinc hPa to Pa conversion

commit 2f489523611686e101d5fd59af0ab46f0bef01e4
Author: russ.treadon <[email protected]>
Date:   Tue Mar 31 16:20:02 2020 +0000

    Vlab issue #65376:  script and source code updates

     scripts/exglobal_analdiag_fv3gfs.sh.ecf - add safeguard to prevent multiple writes to diagnostic files

     src/enkf/gridio_gfs.f90 - use correct units for pressure increment in delz increment computation

commit fdbdac0d12b602d7084a847c2347ff2f9e48a3a7
Merge: 338a7d96 b4638a3b
Author: CoryMartin-NOAA <[email protected]>
Date:   Tue Mar 31 12:57:29 2020 +0000

    Merge branch 'master' into feature/enkf_increment

commit 338a7d96f32f727bc47c3b25d7f5880fa23c7c55
Author: CoryMartin-NOAA <[email protected]>
Date:   Mon Mar 30 20:39:41 2020 +0000

    #76442 - fixed compile errors

commit bdc6b0b5b4ee2786d8cdcb9252f56b0f57b19367
Merge: da3e28a0 4a831215
Author: CoryMartin-NOAA <[email protected]>
Date:   Mon Mar 30 20:26:32 2020 +0000

    Merge branch 'feature/enkf_increment' of gerrit:ProdGSI into feature/enkf_increment

commit 4a8312159f5aeff1b814a9691f74931bb4113eaf
Author: Cory Martin <[email protected]>
Date:   Mon Mar 30 16:26:26 2020 -0400

    #76442 - removed unused vars from gridio_gfs.f90

commit d5433e4274a8db6ae854e4095f26d2a8163b4d91
Author: Cory Martin <[email protected]>
Date:   Mon Mar 30 16:17:57 2020 -0400

    #76442 - added in serial writeincrement to enkf; fixed bugs in enkf/recentersigp; need to confirm it compiles, then test

commit 392e2fd1f437b5e5a3600cd1afcda96da5c12208
Author: Cory Martin <[email protected]>
Date:   Mon Mar 30 12:23:18 2020 -0400

     #76442 - add zero increment option for recentering utility; added it to eupd/ecen scripts

commit 24da418c1012553f082fe429bbb43a747f9fb68f
Author: Cory Martin <[email protected]>
Date:   Fri Mar 27 17:29:21 2020 -0400

    Commented out code that isn't finished for recentersigp

commit 77b2df844c1e7064d2dd2fca2c1f6325c9aa7b18
Author: CoryMartin-NOAA <[email protected]>
Date:   Fri Mar 27 21:14:45 2020 +0000

    #76442 - add zero increment option for EnKF, need to finish adding it for recenter utility

commit f7d098b6ce801df5679061d8cfbe0a9bac53b945
Merge: b24cbdf9 b4638a3b
Author: russ.treadon <[email protected]>
Date:   Fri Mar 27 19:19:44 2020 +0000

    Vlab issue #65376: merge branch 'master' at commit:7b74864b into feature/parallel_ncio

commit 54839e354dfd026e95a94e15555142dd6b55585a
Merge: b764919f 41902c3c
Author: CoryMartin-NOAA <[email protected]>
Date:   Fri Mar 27 18:13:20 2020 +0000

    Merge branch 'feature/enkf_increment' of gerrit:ProdGSI into feature/enkf_increment

commit b764919f2ca8e0f386a2a67426aec342890e3e1d
Author: CoryMartin-NOAA <[email protected]>
Date:   Fri Mar 27 18:12:41 2020 +0000

    #76442 - add forced zero out to recentersigp for output var

commit 41902c3c592f82b563e8508829cdc210e0905a88
Author: russ.treadon <[email protected]>
Date:   Fri Mar 27 14:55:46 2020 +0000

    Add RECENTER_ENKF and PREFIX_ATMINC to exglobal_enkf_fcst_fv3gfs.sh.ecf

commit 15e5783ddec5c7ddd9e2aa4ff244752384db1960
Author: CoryMartin-NOAA <[email protected]>
Date:   Thu Mar 26 20:02:57 2020 +0000

    #76442 - recentersigp and getsigensmeanp_smooth run and there are output files, need to see if they are consistent with before

commit b24cbdf90110190503b20a9d7d0b06ebf494e025
Author: russ.treadon <[email protected]>
Date:   Thu Mar 26 00:43:17 2020 +0000

    Vlab issue #65376:  update namelist and script for global_fv3_4denvar_C192 regression test

commit a9a146852df991979eb2c172fe4376bd60fced1c
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Mar 25 20:13:12 2020 +0000

    #76442 - fixes to get it to compile

commit 7137f58670ca34b6aa4a768927676ff8873906cf
Author: Cory Martin <[email protected]>
Date:   Wed Mar 25 16:00:14 2020 -0400

    #76442 - initial modifications to recentersigp to support recentering increment; commit to test on wcoss

commit bdb159ffc4fa05da81430f2ca09aa1c868b4f77c
Author: russ.treadon <[email protected]>
Date:   Wed Mar 25 15:16:40 2020 +0000

    Vlab issue #65376:  add MKL_NUM_THREADS=1 to global_fv3_4denvar regression tests; add global_fv3_4denvar_C192 regression test

commit 45ae1bc6144e8cb2f9ebcb13d1cc3a609db9b4e7
Author: Cory Martin <[email protected]>
Date:   Wed Mar 25 10:58:18 2020 -0400

     #76442 - make changes to ecen script to support increment recentering

commit b95281d4b4698f5fde26e58790c0a30dec48b80c
Merge: 441acea9 871e9c98
Author: edward.safford <[email protected]>
Date:   Wed Mar 25 13:25:23 2020 +0000

    Merge branch 'feature/parallel_ncio' of gerrit:ProdGSI into feature/parallel_ncio

commit 441acea93361e55ae660b86faa45c933c7cf8787
Author: edward.safford <[email protected]>
Date:   Wed Mar 25 13:23:58 2020 +0000

    Update OznMon summary plot
    script to avoid trying to plot
    single level sources.

commit 60c174b5c91f991ca18a74ab77bec30f2943918a
Author: Cory Martin <[email protected]>
Date:   Tue Mar 24 16:55:06 2020 -0400

    #76442 - make changes to getsigensmeanp_smooth to support netCDF increment files; need to test

commit 871e9c989309e8af3f56bcace10ea3bd170d7d35
Author: russ.treadon <[email protected]>
Date:   Tue Mar 24 16:08:30 2020 +0000

    Vlab issue #65376:  update code related to ozone usage flags

commit 44a3627e7551a3b936b16d54d8fc4d6c1c08ffda
Author: CoryMartin-NOAA <[email protected]>
Date:   Mon Mar 23 20:26:28 2020 +0000

    #76442 - use variable DO_CALC_INCREMENT in the eupd script

commit 1e608049ca8d21f8a7b7f427e0027a08e346dfb2
Author: Cory Martin <[email protected]>
Date:   Mon Mar 23 15:19:58 2020 -0400

    #76442 - add symbolic link of increment, not analysis, in eupd when using write_fv3_incr=true

commit da3e28a0f99d1f4208f9359e7f6ca173f658de5b
Merge: cdd256f8 5e4a0194
Author: CoryMartin-NOAA <[email protected]>
Date:   Mon Mar 23 13:14:41 2020 +0000

    Merge branch 'feature/parallel_ncio' into feature/enkf_increment

commit cdd256f816dd791e32b32c1f772566471d02da09
Author: Cory Martin <[email protected]>
Date:   Mon Mar 23 08:53:38 2020 -0400

    #76442 - fixed some precision issues with variables, need to test; hopefully I can do so on Hera

commit 5910347738e5587fb29a885366d74b49d0e22cd1
Author: CoryMartin-NOAA <[email protected]>
Date:   Fri Mar 20 21:29:15 2020 +0000

    #76442 - delz is now worse than before; but change of r_kind to r_single fixed some vars completely; look into this more

commit 5e4a0194e5b188e69b3bbf1603a9dc246b4f5471
Author: russ.treadon <[email protected]>
Date:   Fri Mar 20 20:56:17 2020 +0000

    Vlab issue #65376:  update netcdf, hdf5, and crtm modules for wcoss_c

commit 9b0647927b2bf7edd9c15474129a8b9063ea0940
Author: CoryMartin-NOAA <[email protected]>
Date:   Fri Mar 20 19:52:13 2020 +0000

    #76442 - bugfix for delz pressure - psges vs psanl

commit 7060fbc53445dedad21efe8db0dc1e79839be21c
Author: CoryMartin-NOAA <[email protected]>
Date:   Fri Mar 20 19:41:20 2020 +0000

    #76442 - bugfix for delz pressure - units hPa vs Pa

commit 3f60f43ab4d94fb17357efa0ddad11637fd38ecb
Author: CoryMartin-NOAA <[email protected]>
Date:   Fri Mar 20 19:06:43 2020 +0000

    #76442 - fixed issues with delz,t,sphum increment; differences are minimal (<0.1%)

commit 20d9170a7935d33676ca9d256bb299e642642356
Author: russ.treadon <[email protected]>
Date:   Fri Mar 20 14:58:02 2020 +0000

    Vlab issue #65376:  remove unused variables

commit 192954c155c08e4b9511d2fb4d81d94d5f7ce254
Author: Cory Martin <[email protected]>
Date:   Fri Mar 20 10:07:50 2020 -0400

    #76442 - read lat/long from guess

commit 1caf42cd9a31b4d6de460bbf8700a8133c689502
Author: Cory Martin <[email protected]>
Date:   Fri Mar 20 08:51:18 2020 -0400

    #76442 - fix allocatable array bug

commit 7df2559e984f63316d2fbaa4e06a857b875f6bdd
Author: Cory Martin <[email protected]>
Date:   Fri Mar 20 08:35:47 2020 -0400

    #76442 - flip latitudes for all 2/3d vars

commit 1579415d29a36473d243d28206a763fc6ce9bd21
Author: Cory Martin <[email protected]>
Date:   Thu Mar 19 17:22:17 2020 -0400

    #76442 - add write of lat/lon to increment file

commit 9e6c2ad27beb9f178143b713214c70e81f41529f
Author: Cory Martin <[email protected]>
Date:   Thu Mar 19 16:01:55 2020 -0400

    #76442 - bugfix for filename of guess for writeincrement

commit f33202297bd9cf9d2c9f2f999335c768e564e547
Author: Cory Martin <[email protected]>
Date:   Thu Mar 19 15:28:38 2020 -0400

    #76442 - bugfix for namelist variable

commit b818ccb1fce0368de4002ae092d6586318473bf3
Merge: 9400abec 294fbb19
Author: russ.treadon <[email protected]>
Date:   Thu Mar 19 19:17:58 2020 +0000

    Vlab issue #65376::  merge branch 'master' at commit:7b52464f into feature/parallel_ncio

commit 63b7a9bc47fdca128c31e62bb04c21ef5c34123f
Author: Cory Martin <[email protected]>
Date:   Thu Mar 19 14:24:16 2020 -0400

    #76442 - bugfix for subroutine 'use'

commit b2548d388c495078778dc2e398176c05ba00b875
Author: Cory Martin <[email protected]>
Date:   Thu Mar 19 14:18:44 2020 -0400

    #76442 - bugfix for namelist option 'use'

commit a2ed64fc22044764dcfa7ef883d616fa026f53ba
Author: Cory Martin <[email protected]>
Date:   Thu Mar 19 14:12:06 2020 -0400

    #76442 - add namelist option for writing increment when parallel IO is true

commit 76442964c30bdc0ee99a6a508e0dfbfde03e67d3
Author: Cory Martin <[email protected]>
Date:   Thu Mar 19 13:58:04 2020 -0400

    #76442 change increment to be r_kind for copygrddata

commit 7da5bc5b3b32727dd0162c83e01ef2de4a0918c9
Author: Cory Martin <[email protected]>
Date:   Thu Mar 19 13:53:26 2020 -0400

    #76442 add copygrddata to increment write

commit 6271ed403db038b18d23828df5362b527e515531
Author: Cory Martin <[email protected]>
Date:   Thu Mar 19 13:47:56 2020 -0400

    #76442 fix psges; add ak/bk

commit c605b477283caaf000e406a9aa8b7432b9f2c668
Author: Cory Martin <[email protected]>
Date:   Thu Mar 19 13:42:12 2020 -0400

    #76442 fix even more compile-time errors

commit 9cff1fb8eb2f6d37f3b6320fb0d45b6dd1d99701
Author: Cory Martin <[email protected]>
Date:   Thu Mar 19 13:35:21 2020 -0400

    #76442 fix some more compile-time errors

commit 5bebfc825099a29432f8eaf4b4505533a40b8747
Author: Cory Martin <[email protected]>
Date:   Thu Mar 19 13:29:45 2020 -0400

    #76442 fix some compile-time errors

commit d78992fb1b8552e7c39d5f333326fa07d86ae40d
Author: Cory Martin <[email protected]>
Date:   Thu Mar 19 13:13:24 2020 -0400

    #76442 commit to switch to WCOSS for compile/test/debug

commit 8adb4eeaa4f849b16e989a0a5c43f309c68f5d31
Author: CoryMartin-NOAA <[email protected]>
Date:   Thu Mar 19 14:43:17 2020 +0000

    #76442 commit to switch to personal machine so I don't have to edit source on VPN

commit dd5df327fd788a32d8cd4a213d392c30e4a9dafa
Merge: 261d282b d7ca0b26
Author: CoryMartin-NOAA <[email protected]>
Date:   Thu Mar 19 13:13:22 2020 +0000

    Merge branch 'feature/enkf_parallel' into feature/enkf_increment

commit d7ca0b26baa2a2e0bcd7d6debf16f715c0f920c9
Merge: d58361bb 9400abec
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Mar 18 21:14:04 2020 +0000

    Merge branch 'feature/parallel_ncio' into feature/enkf_parallel

commit d58361bbdda307143cb622b6123846d78791107a
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Mar 18 21:13:26 2020 +0000

    #72540 - reworked EnKF parallel read again; this time it seems that there are no differences when using nccmp; need to test at higher resolution

commit 9400abec2c9721b220cf5ebece18ab67563a79c9
Author: edward.safford <[email protected]>
Date:   Tue Mar 17 15:46:58 2020 +0000

    Update gdas_radmon_satype.txt file.

    Change-Id: I31e0775bba7c04b656d15751fcd1fd6146deb60d

commit 2a1f1d7a04b6b7ce19c4ae7598376594acae0a01
Author: russ.treadon <[email protected]>
Date:   Mon Mar 16 10:16:42 2020 +0000

    Vlab issue #65376: DA workflow updates for GFS v16 (does not change results)

     * jobs/JGLOBAL_ANALCALC - job to peform non-diagnostic file tasks following anal (new)

     * jobs/JGLOBAL_ANALDIAG - job to create diagnostic files following anal (new)

     * jobs/JGLOBAL_ENKF_ANALDIAG - job to create diagnostic files following eobs (new)

     * scripts/exglobal_analcalc_fv3gfs.sh.ecf - complete non-diagnostic file tasks after GSI completes (new)

     * scripts/exglobal_analdiag_fv3gfs.sh.ecf - create diagnostic files after GSI completes (new)

     * scripts/exglobal_analysis_fv3gfs.sh.ecf - move post-analysis calculations and diagnostic file creation to new exglobal_anal scripts

commit 1a6502f65dd03851f8dc0ad3ee050e262cb957cc
Author: CoryMartin-NOAA <[email protected]>
Date:   Fri Mar 13 20:47:46 2020 +0000

    #72540 - removed debug print

commit 217d6bfbe6fded15f8690572d075145f52d63a58
Author: CoryMartin-NOAA <[email protected]>
Date:   Fri Mar 13 20:39:28 2020 +0000

    #72540 - reworked EnKF parallel read; write was fine but read resulted in small differences from original results; still need to test but saving for backup purposes now

commit ce0842a998a0700bc18b0d21b1e4208f26cb6450
Author: edward.safford <[email protected]>
Date:   Fri Mar 13 16:12:32 2020 +0000

    Implement OznMon fix for iuse_flag
    from NetCDF formatted diag files.
    Update historic values file to add
    ompsnp_npp and ompstc8_npp data.

    Change-Id: Ia6aa1607a2f794ed10b27aaeb0cda536ff5c2039

commit 261d282b469f698763ad5b57de53375d40a19aba
Author: CoryMartin-NOAA <[email protected]>
Date:   Thu Mar 12 20:56:18 2020 +0000

    End of day save; added u,v,delp increment write to EnKF code, still a work in progress

commit 061527d0e7e758f008203bf5645183211b957a20
Merge: 9ee6dc9e 6f7a9ff6
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Mar 11 20:12:01 2020 +0000

    Merge branch 'feature/parallel_ncio' into feature/enkf_parallel

commit 9ee6dc9ef4e48db1e61bdcc8ba9274cd454ee334
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Mar 11 20:11:25 2020 +0000

    #72540 - working version of EnKF parallel read/write, nccmp shows 3 randomly selected anl files are virtually identical (small diffs for spfh); need to test at high res for timing info

commit d2332c616750ba394c9ccd33436d38a50939fb5e
Author: CoryMartin-NOAA <[email protected]>
Date:   Tue Mar 10 21:05:05 2020 +0000

    End of day commit; code runs, but double/triple check vert coord krev, etc.; also ps std dev huge, why? related to vert coord issues perhsps?

commit 80e4e1180ab08a97585abaf3de7763bbf44456e4
Author: CoryMartin-NOAA <[email protected]>
Date:   Mon Mar 9 21:16:30 2020 +0000

    add some debug prints

commit ff87d1acc7b65e0acff6cc1af28c7768f578877f
Author: CoryMartin-NOAA <[email protected]>
Date:   Mon Mar 9 20:58:32 2020 +0000

    End of day save before parallel production test; parallel write for EnKF is hanging, must be MPI related, need to debug on Hera tomorrow

commit 6f7a9ff62afdea8e056dd2de9207ec736a6a6cbb
Author: edward.safford <[email protected]>
Date:   Mon Mar 9 14:37:02 2020 +0000

    Remove ompslp_npp from OznMon's
    expected sat/instrument list.

    Change-Id: I5def2a0fb8569d150fad13379a8bd9b94909533e

commit 131a9762713e79a8fcc76f2649ffab0da1e46fe5
Author: CoryMartin-NOAA <[email protected]>
Date:   Fri Mar 6 21:03:01 2020 +0000

    Code compiles for EnKF parallel read/write; not yet calling write_pnc though, need to ensure increment is on correct PEs and all PEs call the write routine, but only the first 80 do the rest...

commit d0719fec27acd0ec4095e57d9b4fdcfb17ce718a
Author: CoryMartin-NOAA <[email protected]>
Date:   Thu Mar 5 22:18:43 2020 +0000

    End of day commit for backup

commit 498b816cb4ac7b0a1bf077949e51600bdd4c5f88
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Mar 4 21:39:46 2020 +0000

    Commit to save end of 3/4; need to rethink how to do PE distribution for parallel IO

commit 7e2be785e8d3ac83f106d5c4c0fc0c84d82a888a
Merge: 865b492d ffd64e70
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Mar 4 13:39:31 2020 +0000

    Merge branch 'feature/postanl' into feature/enkf_parallel

commit ffd64e7090ef0122b25f9c0e9a67ead43db5602c
Author: CoryMartin-NOAA <[email protected]>
Date:   Tue Mar 3 22:12:03 2020 +0000

    #75775 - added FIXgsm to exglobal_postanl_fv3gfs.sh.ecf, it now runs successfully for calcanl_gfs.py and for concatenating diag files

commit da2cf60c4c9aa3e57a28744757332cac4212151a
Author: CoryMartin-NOAA <[email protected]>
Date:   Tue Mar 3 21:51:57 2020 +0000

    #75775 - added guess/incr/anl links to exglobal_postanl for calcanl_gfs.py

commit 7a8c70c62c459071b2ecfec6624539d3a8e8ce01
Author: CoryMartin-NOAA <[email protected]>
Date:   Tue Mar 3 21:16:24 2020 +0000

    #75775 - fixed bug to hopefully actually run exglobal_postanl script

commit 34f198f23efde46bc553d1e11a185b096b73979a
Author: CoryMartin-NOAA <[email protected]>
Date:   Tue Mar 3 20:55:36 2020 +0000

    #75775 - first attempt at exglobal_postanl script; removes steps from exglobal_analysis script; adds symbolic linking of dir.NNNN directories for diag files;

commit 456ddc5746b2ab302aebff60d1a1fceebc089228
Merge: b1d3644a e8e11098
Author: CoryMartin-NOAA <[email protected]>
Date:   Mon Mar 2 13:55:25 2020 +0000

    Merge branch 'feature/parallel_ncio' of gerrit:ProdGSI into feature/parallel_ncio

commit b1d3644a0dd797f4687a4b3918efbe9f675134c2
Author: CoryMartin-NOAA <[email protected]>
Date:   Mon Mar 2 13:55:17 2020 +0000

    #72540 #68133 modify calcanl_gfs.py to support when gfs/gdasanal step has fewer than LEVS PEs available; tested on Hera, need to confirm on Dell

commit e8e1109823f26d11ee9a5ffc74234f8d825c8b0a
Author: edward.safford <[email protected]>
Date:   Fri Feb 28 21:37:56 2020 +0000

    Add changes to make RadMon level cmake
    build script work.

    Change-Id: I7caf1be073d898c4449ef26f1aff8406d0a59776

commit 0e2bfc8be51e030222d4ad4f5b3fec86b0e9f57b
Merge: e0031965 26005ea1
Author: edward.safford <[email protected]>
Date:   Fri Feb 28 17:55:34 2020 +0000

    Merge branch 'feature/parallel_ncio' of ssh://vlab.ncep.noaa.gov:29418/ProdGSI into feature/parallel_ncio

commit e00319652d138dda56cd2ebd2d3accff3333f284
Author: edward.safford <[email protected]>
Date:   Fri Feb 28 17:52:49 2020 +0000

    Add changes to radmon's time data extraction
    executable and supporting scripts to add
    low obs count warnings.
    Update gdas_radmon_base.tar file for v16rt2
    sources.

    Change-Id: I78420f5b4783a36012b95d2c9097d636e3f9c04c

commit 26005ea11bbaca290fa055ff72d2c9211c2378ff
Merge: 36c7fa3d 8340f155
Author: CoryMartin-NOAA <[email protected]>
Date:   Thu Feb 27 16:22:46 2020 +0000

    Merge branch 'feature/parallel_ncio' of gerrit:ProdGSI into feature/parallel_ncio

commit 36c7fa3ddd8acd2eab9c8693bf48dd7b7dfb5ab0
Author: CoryMartin-NOAA <[email protected]>
Date:   Thu Feb 27 16:22:39 2020 +0000

    calcanl_gfs.py change to remove SLURM_HOSTFILE variable for calc_analysis

commit 8340f15587a8d4d75a1f5d47aecd2e3f51fc98e0
Author: russ.treadon <[email protected]>
Date:   Thu Feb 27 14:44:27 2020 +0000

    Vlab issue #65376:  two updates to exglobal_enkf_post_fv3gfs.sh.ecf

     * change SMOOTH_ENKF default to NO

     * add ENKF_SPREAD to toggle on (YES) or off (NO) creation of ensemble spread file (default NO)

commit 71fb82528bd1940b466edbad1761037ffad72be3
Merge: 9acf4502 d90cdd7c
Author: CoryMartin-NOAA <[email protected]>
Date:   Thu Feb 27 14:03:49 2020 +0000

    Merge branch 'feature/parallel_ncio' of gerrit:ProdGSI into feature/parallel_ncio

commit 9acf4502e779e51f6d33c1556952db9d8dda9035
Author: CoryMartin-NOAA <[email protected]>
Date:   Thu Feb 27 14:03:39 2020 +0000

    Update to calcanl_gfs.py to support interp_inc parallelization on Hera/SLURM

commit d90cdd7ca341e984e6273d2a1562a6e88b9fb1c6
Merge: 2d686687 1a6e33cc
Author: russ.treadon <[email protected]>
Date:   Wed Feb 26 18:29:11 2020 +0000

    Vlab issue #65376

    Merge branch 'master' at commit:8cf58e3e into feature/parallel_ncio

commit 2d68668774d8e5332727da2de935a7cb6f41f73c
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Feb 26 16:49:41 2020 +0000

    Change order of module load for Hera to fix Anaconda issue; modify gsi_utils.py to not need cftime py module

commit 5c585a5ac3b75d1269fb595c8bf052386485bb83
Author: russ.treadon <[email protected]>
Date:   Tue Feb 25 15:09:41 2020 +0000

    Vlab Issue #65376: correct errors in convinfo settings for uv 290 (ASCAT)

    Following corrections made to global_convinfo.txt and gfsv16_historical global_convinfo.txt files

     * turn off thinning for ASCAT satellite ids 3 and 4

     * place ASCAT satellite id 5 in monitor mode

commit 4d9527c474ac64d1e8638658eba42f8cb125a109
Author: russ.treadon <[email protected]>
Date:   Mon Feb 24 19:06:44 2020 +0000

    Vlab Issue #65376: update info files for GFS v16 real-time parallel; add fix files for GFS v16 retrospective parallels

         * global_convinfo.txt - place GOES-13 AMVs (satellite id 257) in monitor mode

         * global_satinfo.txt - place all Metop-A MHS channels in monitor mode

         * gfsv16_historical - directory containing convinfo, ozinfo, satinfo, and prepobs_errtable.global for GFS v16 retrospective parallels

commit f6e0aba3bed659e344e4d8cbddca3dbd59df430a
Merge: 2c5fa6aa 32454686
Author: russ.treadon <[email protected]>
Date:   Fri Feb 21 20:07:34 2020 +0000

    Vlab issue #65376:

    Merge branch 'master' at commit:652c6470 into feature/parallel_ncio

commit 2c5fa6aa4b89e96b0498d0ddc9570b24b9872c21
Author: russ.treadon <[email protected]>
Date:   Fri Feb 21 16:29:42 2020 +0000

    Vlab issue #65376:  update fix/global_convinfo.txt with stricter gpsro qc.  Leave fv3_historical convinfo files unchanged.

commit 5e7f9042af993261a979c7b9706af2e81b2a6349
Author: russ.treadon <[email protected]>
Date:   Fri Feb 21 16:18:20 2020 +0000

    Vlab Issue #65376

    Revert DA_GFSv16 (fix) commit "updated all convinfo files for stricter gpsro qc #65376"

commit 7b58ef7911ce7e68719b9e74a685fd32e9c720a9
Author: russ.treadon <[email protected]>
Date:   Thu Feb 20 22:07:28 2020 +0000

    Move writearray call inside save_jacobian block

commit 8394125a1d466bfb81e6e6bfaa9597be5f8aa1d2
Author: Anna Shlyaeva <[email protected]>
Date:   Thu Feb 20 02:25:17 2020 +0000

    bugfix for gps jacobian for non-assim'd obs

commit 0d6c4d128f79c098396c049f8a8b997b820d6770
Merge: 33279da7 05e9af3b
Author: Anna Shlyaeva <[email protected]>
Date:   Wed Feb 19 22:00:16 2020 +0000

    Merge branch 'feature/parallel_ncio' into bugfix/wind_jacobian

commit 33279da74888a39234cce9bae04986a829ece3aa
Author: Anna Shlyaeva <[email protected]>
Date:   Wed Feb 19 20:46:06 2020 +0000

    use sparse array jacobian for all obs types

commit 05e9af3b74c00f031ad0b5cfae7f16c3999bbbee
Author: russ.treadon <[email protected]>
Date:   Wed Feb 19 19:53:53 2020 +0000

    Vlab issue #65376:  add MPI_Fortran_LIBRARIES to CMakeLists.txt for oznmon_horiz and oznmon_time

commit f0f348dcf7ea14d0f4f3e17508d0dea8e166bf88
Merge: 962c7f79 4974ce73
Author: russ.treadon <[email protected]>
Date:   Wed Feb 19 17:48:34 2020 +0000

    Vlab issue #65376

    Merge branch 'master' commit:0b623a3b and commit:0b623a3b into feature/parallel_ncio

commit 962c7f7928d368baaa760b6f045a589538a4c113
Merge: 259b3f36 4291e520
Author: russ.treadon <[email protected]>
Date:   Wed Feb 19 11:44:54 2020 +0000

    Vlab issue #65376

    Merge branch 'master' at commit:3cb8f0dc into feature/parallel_ncio

commit 7f01a2a0c9e7448fd11f383d6b1a205108555b33
Author: Anna Shlyaeva <[email protected]>
Date:   Tue Feb 18 15:22:37 2020 +0000

    save wind jacobian as sparse array

commit 259b3f3607bcc5a10dbfe5d35461500bdf75a80d
Author: russ.treadon <[email protected]>
Date:   Fri Feb 14 20:08:13 2020 +0000

    Vlab issue #65376:  update modulefile.ProdGSI.hera to use crtm/2.3.0

commit 865b492df62214bcece1614ded55e1f44ece131f
Author: CoryMartin-NOAA <[email protected]>
Date:   Thu Feb 13 13:51:46 2020 +0000

    Commit to move to Mars for testing

commit 902d7d0c778b5847be25aa242938aea9df9fd0f9
Author: Kristen Bathmann <[email protected]>
Date:   Wed Feb 12 21:37:59 2020 +0000

    update to setupbend to alter qc with alt  #65376

commit d5b7668cfdbed5fd4e2e78eeb3bcbf3db51b47e7
Author: [email protected] <[email protected]>
Date:   Mon Feb 10 15:12:20 2020 +0000

    Change to module_fv3gfs_ncio to have the option to write out uncompressed files; exercising option in EnKF write

commit 9041addbe192b886add87259f7c554d6da7b4506
Author: russ.treadon <[email protected]>
Date:   F…
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@CoryMartin-NOAA CoryMartin-NOAA CoryMartin-NOAA approved these changes

@MichaelLueken MichaelLueken Awaiting requested review from MichaelLueken

@dtkleist dtkleist Awaiting requested review from dtkleist

@guoqing-noaa guoqing-noaa Awaiting requested review from guoqing-noaa

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@weiwilliam @CoryMartin-NOAA @MichaelLueken