DESCRIPTION

Package: ToxicR
Type: Package
Title: Analyzing Toxicology Dose-Response Data
Version: 24.10.1.4
Date: 2024-11-12
Authors@R: 
    c(
    person(given = "Matt",
           family = "Wheeler",
           role = c("aut", "cre"),
           email = "matt.wheeler@nih.gov",
           comment = c(ORCID = "0000-0002-8242-2391")),
    person(given = "Sooyeong",
           family = "Lim",
           role = "aut"),
    person(given ="Eric",
           family="Wimberly",
           role = "ctb"),
    person(given = "Shail",
           family = "Choksi",
	   role = "ctb"),
    person(given = "Brian",
           family = "Kidd",
	   role = "ctb"),
    person(given = "Keith",
           family = "Shockley",
           role = "com"),
    person(given = "Jennifer",
           family = "Fostel",
           role = "com"),
    person(given="Lonlong",
           family="Yang",
           role="ctb",
           comment="Modfied Cochran-Armitage test."),
    person(given = "Dawan",
           family = "Taley",
           role = "com"),
    person(given = "Cari",
           family = "Martini",
           role   = "com"),
    person(given = "Ashwin",
           family = "Raghuraman",
           role   = "ctb",
           comment = "Modified code for (Jonckheere, Williams etc.) to make them  standalone functions."),
    person(given = "Steven",
           family = "Johnson",
           role = "ctb",
           comment ="Author of NLOPT."),
    person(given = "Aymeric",
           family = "Stamm",
           role = "ctb",
           comment ="Maintainer of nloptr Packag 2.0.1 from which all compile scripts were taken."),
    person(given = "Dirk",
           family = "Eddelbuettel",
           role = "ctb",
           comment ="Contributed script to download GSL, as in RcppGSL."),
    person("U.S. Deptartment of Health and Human Services (US HHS), National Institute of Environmental Health Sciences (NIEHS)",
           role="cph",
           comment ="Owns Copyright for all ToxicR code outside NLOPT and nloptr scripts.")
           )
Maintainer: Matt Wheeler <matt.wheeler@nih.gov>
Copyright: file inst/COPYRIGHTS
Description: Toxicology routines for analyzing dose-response data include dose-response analysis 
    and trend tests. Dose-Response methods are based upon the US EPA's benchmark dose software 3.  Methods have
    been extended to include additional functionality based on World Health Organization 
    guidelines.  It further supports the European Food Safety Authority's 
    draft guidance on model averaging. The dose-response methods and datasets used in this package are 
    described in Wheeler et al. (2019) <doi:10.1111/risa.13218>, Wheeler et al. (2020) <doi:10.1111/risa.13537>,
    and Wheeler et al. (2022) <doi:10.1002/env.2728>.  NTP routines are described in 
    Bailer and Portier (1988) <doi:10.2307/2531856>, Bieler and Williams (1993) <doi:10.2307/2532200>, 
    Williams (1971) <doi:10.2307/2528930>, and Shirley (1977) <doi:10.2307/2529789>.
Depends: R (>= 4.1.0)
License: LGPL (>= 3)
URL: https://github.com/NIEHS/ToxicR
LazyData: true
Imports: Rcpp (>= 1.0.0), ggplot2 (>= 3.3.2), shiny (>= 1.5.0), coda
        (>= 0.19-4), scales (>= 1.1.1), forcats, ggridges (>= 0.5.3),
        doBy (>= 4.6.11), multcomp (>= 1.4), dplyr (>= 1.0.7), remotes
LinkingTo: Rcpp, RcppEigen, RcppGSL
RoxygenNote: 7.3.2
Encoding: UTF-8
VignetteBuilder: knitr
Suggests: plotly (>= 4.9.2.1), rmarkdown, ggpubr (>=
        0.4.0), testthat (>= 3.1.0),gridExtra (>= 2.3), VIM (>= 6.1.1),
        knitr (>= 1.36), modules, actuar (>= 3.2-0)
NeedsCompilation: yes
Packaged: 2024-04-12 20:00:54 UTC; shail.choksi
Author: Matt Wheeler [aut, cre] (<https://orcid.org/0000-0002-8242-2391>),
  Sooyeong Lim [aut],
  Eric Wimberly [ctb],
  Shail Choksi [ctb],
  Brian Kidd [ctb],
  Keith Shockley [com],
  Jennifer Fostel [com],
  Lonlong Yang [ctb] (Modfied Cochran-Armitage test.),
  Dawan Taley [com],
  Cari Martini [com],
  Ashwin Raghuraman [ctb] (Modified code for (Jonckheere, Williams etc.)
    to make them standalone functions.),
  Steven Johnson [ctb] (Author of NLOPT.),
  Aymeric Stamm [ctb] (Maintainer of nloptr Packag 2.0.1 from which all
    compile scripts were taken.),
  Dirk Eddelbuettel [ctb] (Contributed script to download GSL, as in
    RcppGSL.),
  U.S. Deptartment of Health and Human Services (US HHS), National
    Institute of Environmental Health Sciences (NIEHS) [cph] (Owns
    Copyright for all ToxicR code outside NLOPT and nloptr scripts.)