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Shell error in downstream_bgc_prep_selection rule: Argument list too long #286

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OmkarSaMo opened this issue Oct 2, 2023 · 0 comments
Open

Shell error in downstream_bgc_prep_selection rule: Argument list too long #286

OmkarSaMo opened this issue Oct 2, 2023 · 0 comments
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@OmkarSaMo
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This common error was also found in BGC workflow when the list of BGCs in the sample set it too high.

/datadrive/bgcflow/.snakemake/shell_tmp.iz1795my/script.sh: line 10: /datadrive/bgcflow/.snakemake/conda/c2ac5875f1b6f2374bfd4dbe39acdefe_/bin/python: Argument list too long

Log file: /datadrive/bgcflow/logs/bgcs/downstream_bgc_prep/hopene/bgc_downstream_bgc_prep-7.0.0.log
@OmkarSaMo OmkarSaMo added the bug Something isn't working label Oct 2, 2023
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@OmkarSaMo