overwrite option does not work on harvest configuration files with <bundles>

[tloubrieu-jpl]

🐛 Describe the bug

📜 To Reproduce

Steps to reproduce the behavior:

1. Create a job configuration file with <bundles> to specify the input files
2. Launch harvest once with this configuration file
3. Launch harvest a second time with the same configuration file and --overwrite option
4. The products are skipped by harvest as said in the command report.

🕵️ Expected behavior

We want harvest to re-ingest all the products.

📚 Version of Software Used

3.8.0-SNAPSHOT

🩺 Test Data / Additional context

🏞Screenshots

🖥 System Info

• OS: [e.g. iOS]
• Browser [e.g. chrome, safari]
• Version [e.g. 22]

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🦄 Related requirements

⚙️ Engineering Details

[tloubrieu-jpl]

This behavior has been reported by @plawton-umd

[alexdunnjpl]

Duplicate of #112 (keeping the other as it has some additional detail