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add fsleyes #5

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bcdarwin opened this issue Oct 6, 2022 · 0 comments
Open

add fsleyes #5

bcdarwin opened this issue Oct 6, 2022 · 0 comments

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@bcdarwin
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bcdarwin commented Oct 6, 2022

Currently we install FSL via the Ubuntu Focal package, which pulls in FSL 5.0.x. However, fsleyes was not merged into FSL until 6.x, but is not available separately from Ubuntu/NeuroDebian repos as of 20.04 Focal, the version we are currently based on. Thus, we either need to upgrade to FSL 6 or install fsleyes separately. According to repology.org, fsleyes is available from (in addition to downloading and installing by hand) Spack, Gentoo Science Overlay, AUR, and older NeuroDebian releases, while FSL 6 is available only from AUR, Gentoo Science, and Spack. FSL 6 also has a conda-based fsl-installer.py updating the older fslinstaller.py.

It would also suffice to have a separate container for FSL (allowing us to remove it from the main container).

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