mkdocs.yml

site_name: Seg2Link Documentation
site_url: https://wenchentao.github.io/Seg2Link/index.html
repo_url: https://github.com/WenChentao/Seg2Link
site_author: Chentao Wen
theme: readthedocs
markdown_extensions:
  - pymdownx.arithmatex:
      generic: true
  - attr_list

use_directory_urls: false # set to False only for building offline site

extra_javascript:
  - javascripts/mathjax.js
  - https://polyfill.io/v3/polyfill.min.js?features=es6
  - https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js

nav:
    - Home: 'index.md'
    - Overview: 'overview.md'
    - Data preparation: 'seg2link-unet2d.md'
    - Use Seg2Link: 'quick_start.md'
    - FAQ: 'FAQ.md'
    - Advanced parameters: 'advanced_parameters.md'
    - Round1 - Seg2D+Link:
      - Start round 1: 'Round1/start_r1.md'
      - Parameters description: 'Round1/parameter_setting.md'
      - Panel description: 'Round1/panel_description.md'
      - Merge cells: 'Round1/merge.md'
      - Delete cells: 'Round1/delete.md'
      - Divide a cell: 'Round1/divide.md'
      - Divide + Relink: 'Round1/divide_relink.md'
      - Next slice: 'Round1/next.md'
      - Export as 3D array: 'Round1/export.md'
    - Round2 - 3D correction:
      - Start round 2: 'Round2/start_r2.md'
      - Parameters description: 'Round2/parameter_setting.md'
      - Panel description: 'Round2/panel_description.md'
      - Localize a cell: 'Round2/localize.md'
      - Merge cells: 'Round2/merge.md'
      - Delete cells: 'Round2/delete.md'
      - Divide / Division-Relink (2D): 'Round2/divide.md'
      - Divide a cell (3D): 'Round2/divide_3d.md'
      - Insert a cell: 'Round2/insert.md'
      - Sort and remove tiny cells: 'Round2/sort_remove.md'
      - Save/Load/Export: 'Round2/save_load_export.md'