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There are no response for GUAVA's bottoms #11

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RitataLU opened this issue Apr 10, 2019 · 4 comments
Open

There are no response for GUAVA's bottoms #11

RitataLU opened this issue Apr 10, 2019 · 4 comments

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@RitataLU
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HI
I tried to press the "ATAC-seq Data analysis" bottom, but there was no response, the window still stop at first screen. However, when I press the "ATAC-seq Differentially analysis", there was a response to the next step.
So I choose to do ATAC-seq Differentially analysis by using my own bam file and narrowpeak data. But after I uploaded bam file and narrowpeak data, I press "Next", there was still no response.
How can I fix that?

@MayurDivate
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did you get any message on the terminal?
if not, try running configure.sh and let me know the output.

Mayur

@RitataLU
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RitataLU commented Apr 12, 2019

Hi
I did not get any message on the terminal when I press the GUI bottom.
I did run configure.sh before I started run GUAVA.jar.
I rerun configure.sh, rere is the screenshot
Screen Shot 2019-04-12 at 10 36 54 AM

Screen Shot 2019-04-12 at 10 39 30 AM
Screen Shot 2019-04-12 at 10 39 46 AM
Screen Shot 2019-04-12 at 10 39 55 AM

@MayurDivate
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Hi RitatLU,

Have you fixed GUAVA installation?

I have noticed that Bioconductor has changed biocLite() to BiocManager().
This might be affecting the installation of R packages.
I am working on it and soon I will release GUAVA with required update.

Thanks,
Mayur

@RitataLU
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Hi Mayur,

I was wondering if the issue has been solved.
I am trying to run 'GUAVA.jar' today, but it is still no response to the bottom of 'ATAC-seq Data analysis'. Even there is response for 'Differential analysis' but the loading is very slow, I could not add files. I am wondering if you know how to deal with it or do you have manual for not GUI usage.

Thanks,
Rita

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