docs(mf6io): update mf6io markdown and tex files (#1591) #18
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| name: MODFLOW 6 compiler checks | |
| on: | |
| push: | |
| branches: | |
| - v[0-9]+.[0-9]+.[0-9]+* | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| schedule: | |
| - cron: 0 0 * * 0 # 12am utc every sunday | |
| # workflow_dispatch trigger to start release via GitHub UI or CLI, see | |
| # https://docs.github.com/en/actions/managing-workflow-runs/manually-running-a-workflow | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| name: Test | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| # combinations from https://github.com/fortran-lang/setup-fortran#runner-compatibility | |
| include: | |
| # gfortran | |
| - {os: ubuntu-20.04, compiler: gcc, version: 7} | |
| - {os: ubuntu-20.04, compiler: gcc, version: 8} | |
| - {os: ubuntu-20.04, compiler: gcc, version: 9} | |
| - {os: ubuntu-20.04, compiler: gcc, version: 10} | |
| - {os: ubuntu-20.04, compiler: gcc, version: 11} | |
| - {os: ubuntu-22.04, compiler: gcc, version: 9} | |
| - {os: ubuntu-22.04, compiler: gcc, version: 10} | |
| - {os: ubuntu-22.04, compiler: gcc, version: 11} | |
| - {os: ubuntu-22.04, compiler: gcc, version: 12} | |
| - {os: ubuntu-22.04, compiler: gcc, version: 13} | |
| - {os: macos-11, compiler: gcc, version: 7} | |
| - {os: macos-11, compiler: gcc, version: 8} | |
| - {os: macos-11, compiler: gcc, version: 9} | |
| - {os: macos-11, compiler: gcc, version: 10} | |
| - {os: macos-11, compiler: gcc, version: 11} | |
| - {os: macos-11, compiler: gcc, version: 12} | |
| - {os: macos-11, compiler: gcc, version: 13} | |
| - {os: macos-12, compiler: gcc, version: 7} | |
| - {os: macos-12, compiler: gcc, version: 8} | |
| - {os: macos-12, compiler: gcc, version: 9} | |
| - {os: macos-12, compiler: gcc, version: 10} | |
| - {os: macos-12, compiler: gcc, version: 11} | |
| - {os: macos-12, compiler: gcc, version: 12} | |
| - {os: macos-12, compiler: gcc, version: 13} | |
| - {os: windows-2019, compiler: gcc, version: 9} | |
| - {os: windows-2019, compiler: gcc, version: 10} | |
| - {os: windows-2019, compiler: gcc, version: 11} | |
| - {os: windows-2019, compiler: gcc, version: 12} | |
| - {os: windows-2019, compiler: gcc, version: 13} | |
| - {os: windows-2022, compiler: gcc, version: 9} | |
| - {os: windows-2022, compiler: gcc, version: 10} | |
| - {os: windows-2022, compiler: gcc, version: 11} | |
| - {os: windows-2022, compiler: gcc, version: 12} | |
| - {os: windows-2022, compiler: gcc, version: 13} | |
| # ifx | |
| - {os: ubuntu-20.04, compiler: intel, version: 2023.2} | |
| - {os: ubuntu-20.04, compiler: intel, version: 2023.1} | |
| - {os: ubuntu-20.04, compiler: intel, version: "2023.0"} | |
| - {os: ubuntu-20.04, compiler: intel, version: 2022.2.1} | |
| - {os: ubuntu-20.04, compiler: intel, version: 2022.2} | |
| - {os: ubuntu-20.04, compiler: intel, version: 2022.1} | |
| - {os: ubuntu-20.04, compiler: intel, version: "2022.0"} | |
| - {os: ubuntu-20.04, compiler: intel, version: 2021.4} | |
| - {os: ubuntu-20.04, compiler: intel, version: 2021.2} | |
| - {os: ubuntu-20.04, compiler: intel, version: 2021.1} | |
| - {os: ubuntu-22.04, compiler: intel, version: 2023.2} | |
| - {os: ubuntu-22.04, compiler: intel, version: 2023.1} | |
| - {os: ubuntu-22.04, compiler: intel, version: "2023.0"} | |
| - {os: ubuntu-22.04, compiler: intel, version: 2022.2.1} | |
| - {os: ubuntu-22.04, compiler: intel, version: 2022.2} | |
| - {os: ubuntu-22.04, compiler: intel, version: 2022.1} | |
| - {os: ubuntu-22.04, compiler: intel, version: "2022.0"} | |
| - {os: ubuntu-22.04, compiler: intel, version: 2021.4} | |
| - {os: ubuntu-22.04, compiler: intel, version: 2021.2} | |
| - {os: ubuntu-22.04, compiler: intel, version: 2021.1} | |
| # no ifx on mac | |
| - {os: windows-2019, compiler: intel, version: 2023.2} | |
| - {os: windows-2019, compiler: intel, version: 2023.1} | |
| - {os: windows-2019, compiler: intel, version: "2023.0"} | |
| - {os: windows-2019, compiler: intel, version: 2022.2} | |
| - {os: windows-2019, compiler: intel, version: 2022.1} | |
| - {os: windows-2022, compiler: intel, version: 2023.2} | |
| - {os: windows-2022, compiler: intel, version: 2023.1} | |
| - {os: windows-2022, compiler: intel, version: "2023.0"} | |
| - {os: windows-2022, compiler: intel, version: 2022.2} | |
| - {os: windows-2022, compiler: intel, version: 2022.1} | |
| # ifort | |
| - {os: ubuntu-20.04, compiler: intel-classic, version: "2021.10"} | |
| - {os: ubuntu-20.04, compiler: intel-classic, version: 2021.9} | |
| - {os: ubuntu-20.04, compiler: intel-classic, version: 2021.8} | |
| - {os: ubuntu-20.04, compiler: intel-classic, version: 2021.7} | |
| - {os: ubuntu-20.04, compiler: intel-classic, version: 2021.6} | |
| - {os: ubuntu-20.04, compiler: intel-classic, version: 2021.5} | |
| - {os: ubuntu-20.04, compiler: intel-classic, version: 2021.4} | |
| - {os: ubuntu-20.04, compiler: intel-classic, version: 2021.3} | |
| - {os: ubuntu-20.04, compiler: intel-classic, version: 2021.2} | |
| - {os: ubuntu-20.04, compiler: intel-classic, version: 2021.1} | |
| - {os: ubuntu-22.04, compiler: intel-classic, version: "2021.10"} | |
| - {os: ubuntu-22.04, compiler: intel-classic, version: 2021.9} | |
| - {os: ubuntu-22.04, compiler: intel-classic, version: 2021.8} | |
| - {os: ubuntu-22.04, compiler: intel-classic, version: 2021.7} | |
| - {os: ubuntu-22.04, compiler: intel-classic, version: 2021.6} | |
| - {os: ubuntu-22.04, compiler: intel-classic, version: 2021.5} | |
| - {os: ubuntu-22.04, compiler: intel-classic, version: 2021.4} | |
| - {os: ubuntu-22.04, compiler: intel-classic, version: 2021.3} | |
| - {os: ubuntu-22.04, compiler: intel-classic, version: 2021.2} | |
| - {os: ubuntu-22.04, compiler: intel-classic, version: 2021.1} | |
| - {os: macos-11, compiler: intel-classic, version: "2021.10"} | |
| - {os: macos-11, compiler: intel-classic, version: 2021.9} | |
| - {os: macos-11, compiler: intel-classic, version: 2021.8} | |
| - {os: macos-11, compiler: intel-classic, version: 2021.7} | |
| - {os: macos-11, compiler: intel-classic, version: 2021.6} | |
| - {os: macos-11, compiler: intel-classic, version: 2021.5} | |
| - {os: macos-11, compiler: intel-classic, version: 2021.4} | |
| - {os: macos-11, compiler: intel-classic, version: 2021.3} | |
| - {os: macos-11, compiler: intel-classic, version: 2021.2} | |
| - {os: macos-11, compiler: intel-classic, version: 2021.1} | |
| - {os: macos-12, compiler: intel-classic, version: "2021.10"} | |
| - {os: macos-12, compiler: intel-classic, version: 2021.9} | |
| - {os: macos-12, compiler: intel-classic, version: 2021.8} | |
| - {os: macos-12, compiler: intel-classic, version: 2021.7} | |
| - {os: macos-12, compiler: intel-classic, version: 2021.6} | |
| - {os: macos-12, compiler: intel-classic, version: 2021.5} | |
| - {os: macos-12, compiler: intel-classic, version: 2021.4} | |
| - {os: macos-12, compiler: intel-classic, version: 2021.3} | |
| - {os: macos-12, compiler: intel-classic, version: 2021.2} | |
| - {os: macos-12, compiler: intel-classic, version: 2021.1} | |
| - {os: windows-2019, compiler: intel-classic, version: "2021.10"} | |
| - {os: windows-2019, compiler: intel-classic, version: 2021.9} | |
| - {os: windows-2019, compiler: intel-classic, version: 2021.8} | |
| - {os: windows-2019, compiler: intel-classic, version: 2021.7} | |
| - {os: windows-2019, compiler: intel-classic, version: 2021.6} | |
| - {os: windows-2022, compiler: intel-classic, version: "2021.10"} | |
| - {os: windows-2022, compiler: intel-classic, version: 2021.9} | |
| - {os: windows-2022, compiler: intel-classic, version: 2021.8} | |
| - {os: windows-2022, compiler: intel-classic, version: 2021.7} | |
| - {os: windows-2022, compiler: intel-classic, version: 2021.6} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout modflow6 | |
| uses: actions/checkout@v4 | |
| with: | |
| path: modflow6 | |
| - name: Checkout modflow6-testmodels | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: MODFLOW-USGS/modflow6-testmodels | |
| path: modflow6-testmodels | |
| - name: Checkout modflow6-examples | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: MODFLOW-USGS/modflow6-examples | |
| path: modflow6-examples | |
| - name: Setup ${{ matrix.compiler }} ${{ matrix.version }} | |
| uses: fortran-lang/setup-fortran@v1 | |
| with: | |
| compiler: ${{ matrix.compiler}} | |
| version: ${{ matrix.version }} | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: modflow6/environment.yml | |
| init-shell: >- | |
| bash | |
| powershell | |
| cache-environment: true | |
| cache-downloads: true | |
| - name: Build modflow6 | |
| working-directory: modflow6 | |
| run: | | |
| meson setup builddir -Ddebug=false --prefix=$(pwd) --libdir=bin | |
| meson install -C builddir | |
| - name: Show build log | |
| if: failure() | |
| working-directory: modflow6 | |
| run: cat builddir/meson-logs/meson-log.txt | |
| - name: Upload build log | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: meson-log.txt | |
| path: modflow6/builddir/meson-logs/meson-log.txt | |
| - name: Unit test programs | |
| if: success() | |
| working-directory: modflow6 | |
| run: meson test --verbose --no-rebuild -C builddir | |
| - name: Create compile report | |
| if: success() || failure() | |
| shell: bash | |
| run: | | |
| if [[ "${{ job.status }}" == "success" ]]; then | |
| support="✓" | |
| else | |
| support="" | |
| fi | |
| mkdir -p compat | |
| prefix="${{ matrix.os }},${{ matrix.compiler }},${{ matrix.version }}" | |
| echo "$prefix,$support" >> "compat/comp_${prefix//,/_}.csv" | |
| - name: Update flopy | |
| if: success() | |
| working-directory: modflow6/autotest | |
| run: python update_flopy.py | |
| - name: Get executables | |
| if: success() | |
| working-directory: modflow6/autotest | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| run: pytest -v --durations 0 get_exes.py | |
| - name: Test modflow6 | |
| if: success() | |
| working-directory: modflow6/autotest | |
| env: | |
| REPOS_PATH: ${{ github.workspace }} | |
| run: pytest -v -n auto --durations 0 | |
| - name: Create test report | |
| if: success() || failure() | |
| shell: bash | |
| run: | | |
| if [[ "${{ job.status }}" == "success" ]]; then | |
| support="✓" | |
| else | |
| support="" | |
| fi | |
| mkdir -p compat | |
| prefix="${{ matrix.os }},${{ matrix.compiler }},${{ matrix.version }}" | |
| echo "$prefix,$support" >> "compat/test_${prefix//,/_}.csv" | |
| - name: Upload reports | |
| if: success() || failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: compat | |
| path: compat/*.csv | |
| report: | |
| name: Make compatibility report | |
| if: success() || failure() | |
| needs: test | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.9 | |
| - name: Install packages | |
| run: pip install tabulate pandas | |
| - name: Download reports | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: compat | |
| path: .github/compat/new | |
| - name: Concatenate reports | |
| working-directory: .github/compat | |
| run: | | |
| cols="runner,compiler,version,support" | |
| echo "$cols" > long_comp.csv | |
| echo "$cols" > long_test.csv | |
| cat new/comp*.csv >> long_comp.csv | |
| cat new/test*.csv >> long_test.csv | |
| - name: Make wide CSV and MD tables | |
| working-directory: .github/compat | |
| id: merge-reports | |
| run: | | |
| python ../common/wide_compat_reports.py "long_comp.csv" "comp.csv" | |
| python ../common/wide_compat_reports.py "long_test.csv" "test.csv" | |
| # only upload wide CSVs and Markdown tables | |
| - name: Upload artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: compat | |
| path: | | |
| .github/compat/comp.* | |
| .github/compat/test.* | |
| # update DEVELOPER.md if this is not a push event and there are any changes | |
| - name: Check for changes | |
| working-directory: .github/compat | |
| if: github.event_name != 'pull_request' | |
| id: diff | |
| run: | | |
| if ! [ -f comp.csv ]; then | |
| echo "diff=false" >> $GITHUB_OUTPUT | |
| exit 0 | |
| fi | |
| diff_comp=$(git diff comp.csv) | |
| diff_test=$(git diff test.csv) | |
| if [[ ( $diff_comp == "" ) && ( $diff_test == "" ) ]]; then | |
| echo "No changes found" | |
| echo "diff=false" >> $GITHUB_OUTPUT | |
| else | |
| echo "comp.csv diff:" | |
| echo "$diff_comp" | |
| echo "test.csv diff:" | |
| echo "$diff_test" | |
| echo "diff=true" >> $GITHUB_OUTPUT | |
| fi | |
| - name: Update DEVELOPER.md | |
| if: ${{ steps.diff.outputs.diff == 'true' && github.event_name != 'pull_request' }} | |
| run: | | |
| python .github/common/update_compat_tables.py "compile" ".github/compat/comp.md" "DEVELOPER.md" | |
| python .github/common/update_compat_tables.py "test" ".github/compat/test.md" "DEVELOPER.md" | |
| - name: Print DEVELOPER.md diff | |
| if: ${{ steps.diff.outputs.diff == 'true' && github.event_name != 'pull_request' }} | |
| run: git diff DEVELOPER.md | |
| - name: Create pull request | |
| if: ${{ steps.diff.outputs.diff == 'true' && github.event_name != 'pull_request' }} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| # one at a time | |
| head="compat" | |
| id=$(gh pr list -H $head -s open --json id -q ".[0].id") | |
| [[ -n "${id// /}" ]] && (echo "PR already open"; exit 0) || (echo "opening PR") | |
| # setup bot user | |
| git config user.name "github-actions[bot]" | |
| git config user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
| # create new branch | |
| git switch -c "$head" | |
| # commit and push | |
| git add DEVELOPER.md .github/compat/comp.csv .github/compat/test.csv | |
| git commit -m "Update compatibility tables" | |
| git push -u origin "$head" | |
| # open PR | |
| cat <(echo '### Compile') <(echo) .github/compat/comp.md <(echo) <(echo '### Test') <(echo) .github/compat/test.md > compat.md | |
| gh pr create -B "${{ github.event.repository.default_branch }}" -H "$head" --title "Update compile/test compatibility tables" --body-file compat.md |