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Sparse Waveforms from spikeinterface #1058

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samuelbray32 opened this issue Aug 7, 2024 · 1 comment
Open

Sparse Waveforms from spikeinterface #1058

samuelbray32 opened this issue Aug 7, 2024 · 1 comment
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bug Something isn't working decoding

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@samuelbray32
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Describe the bug
spikeinterface.extract_waveforms has an argument sparse. If this is True the waveform extractor will only return the waveforms on a subset of channels that it deems important on a per-unit basis through one of a set of algorithms here. This is an issue for clusterless feature extraction for probes, as all events are a single "unit" and can have features on very different channels.

Problem:
The default value for sparse changed from False to True between spikeinterface versions 0.98.2 and 0.99.0

Solution:

  • sparse = True needs to be included in the params["waveform_extraction_params"] dictionary from WaveformFeaturesParams table
  • The tutorial notebook for waveform extraction needs to highlite this
@samuelbray32 samuelbray32 added bug Something isn't working decoding labels Aug 7, 2024
@samuelbray32
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See new amplitude_probe parameter set in WaveformFeatureParams table for example solution

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