diff --git a/btk/__init__.py b/btk/__init__.py index 2835b322e..c3d84e93d 100644 --- a/btk/__init__.py +++ b/btk/__init__.py @@ -4,6 +4,7 @@ providing a framework to test user defined detection/deblending/measurement algorithms. """ + from importlib import metadata __author__ = "btk developers" diff --git a/btk/blend_batch.py b/btk/blend_batch.py index 54827de40..88ef521be 100644 --- a/btk/blend_batch.py +++ b/btk/blend_batch.py @@ -1,4 +1,5 @@ """Class which stores all relevant data for blends.""" + import os from dataclasses import dataclass from typing import List, Optional, Union diff --git a/btk/blend_generator.py b/btk/blend_generator.py index 2c8d6f6d8..56b990fb2 100644 --- a/btk/blend_generator.py +++ b/btk/blend_generator.py @@ -1,6 +1,5 @@ """Contains class `BlendGenerator` to combine entries from a given catalog into blends.""" - from btk.catalog import Catalog from btk.sampling_functions import SamplingFunction diff --git a/btk/catalog.py b/btk/catalog.py index bfc9c868d..2d8b0be84 100644 --- a/btk/catalog.py +++ b/btk/catalog.py @@ -1,4 +1,5 @@ """Contains abstract base class `Catalog` that standarizes catalog usage across BTK.""" + import os from abc import ABC, abstractmethod from copy import deepcopy diff --git a/btk/deblend.py b/btk/deblend.py index dc7e9a305..a5cfc1478 100644 --- a/btk/deblend.py +++ b/btk/deblend.py @@ -1,4 +1,5 @@ """Contains the Deblender classes and its subclasses.""" + import inspect from abc import ABC, abstractmethod from itertools import repeat diff --git a/btk/draw_blends.py b/btk/draw_blends.py index 84a36e181..8969df99c 100644 --- a/btk/draw_blends.py +++ b/btk/draw_blends.py @@ -1,4 +1,5 @@ """Module for generating batches of drawn blended images.""" + import copy from abc import ABC, abstractmethod from itertools import chain diff --git a/btk/match.py b/btk/match.py index 3442224fa..738dea92c 100644 --- a/btk/match.py +++ b/btk/match.py @@ -1,4 +1,5 @@ """Tools to match detected objects with truth catalog.""" + from abc import ABC, abstractmethod from typing import List, Tuple diff --git a/btk/measure.py b/btk/measure.py index 8c45955cb..5bb367900 100644 --- a/btk/measure.py +++ b/btk/measure.py @@ -1,4 +1,5 @@ """Module for measuring galaxy properties.""" + from typing import Tuple import galsim diff --git a/btk/metrics/base.py b/btk/metrics/base.py index 5f6b55830..6fdf603e4 100644 --- a/btk/metrics/base.py +++ b/btk/metrics/base.py @@ -1,4 +1,5 @@ """Implements base class for metrics in BTK.""" + # pylint: disable=arguments-differ from abc import ABC, abstractmethod from typing import Dict, Union diff --git a/btk/metrics/detection.py b/btk/metrics/detection.py index b04b52851..21e170e04 100644 --- a/btk/metrics/detection.py +++ b/btk/metrics/detection.py @@ -1,4 +1,5 @@ """Implementation of detection metrics.""" + from typing import Dict import numpy as np diff --git a/btk/metrics/reconstruction.py b/btk/metrics/reconstruction.py index 4398fd05c..af71a3624 100644 --- a/btk/metrics/reconstruction.py +++ b/btk/metrics/reconstruction.py @@ -1,4 +1,5 @@ """Metrics for reconstruction.""" + from abc import ABC from typing import Callable, Dict diff --git a/btk/metrics/segmentation.py b/btk/metrics/segmentation.py index ac66a1ec7..870c6ab84 100644 --- a/btk/metrics/segmentation.py +++ b/btk/metrics/segmentation.py @@ -1,4 +1,5 @@ """Implements segmentation metrics for evaluating deblending results in BTK.""" + from abc import ABC, abstractmethod from typing import Dict diff --git a/btk/metrics/utils.py b/btk/metrics/utils.py index fad80f39b..e8644cf3b 100644 --- a/btk/metrics/utils.py +++ b/btk/metrics/utils.py @@ -1,6 +1,5 @@ """Atomic metric functions.""" - import numpy as np from skimage.metrics import peak_signal_noise_ratio, structural_similarity diff --git a/btk/multiprocess.py b/btk/multiprocess.py index 8a43ba5b5..4907c3184 100644 --- a/btk/multiprocess.py +++ b/btk/multiprocess.py @@ -1,4 +1,5 @@ """Tools for multiprocessing in BTK.""" + import multiprocessing as mp from itertools import repeat, starmap from typing import Callable, Iterable diff --git a/btk/plotting.py b/btk/plotting.py index 750d85f22..63b30376c 100644 --- a/btk/plotting.py +++ b/btk/plotting.py @@ -1,4 +1,5 @@ """Utility functions for plotting images.""" + from typing import Optional import numpy as np diff --git a/btk/sampling_functions.py b/btk/sampling_functions.py index 62b482768..5fa5024fa 100644 --- a/btk/sampling_functions.py +++ b/btk/sampling_functions.py @@ -1,4 +1,5 @@ """Contains classes of function for extracing information from catalog in blend batches.""" + from abc import ABC, abstractmethod from typing import Optional, Tuple @@ -108,7 +109,7 @@ def __init__( min_number: Defined in parent class stamp_size: Size of the desired stamp. max_shift: Magnitude of maximum value of shift. If None then it - is set as one-tenth the stamp size. (in arcseconds) + is set as one-tenth the stamp size. (in arcseconds) seed: Seed to initialize randomness for reproducibility. min_mag: Minimum magnitude allowed in samples max_mag: Maximum magnitude allowed in samples. @@ -159,6 +160,87 @@ def __call__(self, table: Table) -> Table: return blend_table +class DensitySampling(SamplingFunction): + """Sampling function that produces galaxy field with a specified density.""" + + def __init__( + self, + max_number: int = 40, + min_number: int = 0, + density: float = 185, + stamp_size: float = 24.0, + max_shift: Optional[float] = None, + seed: int = DEFAULT_SEED, + max_mag: float = 27.3, + min_mag: float = -np.inf, + mag_name: str = "i_ab", + ): + """Initializes default sampling function. + + Args: + max_number: Defined in parent class + min_number: Defined in parent class + density: Density of galaxies, default corresponds to 27.3 i-band magnitude + cut in CATSIM catalog. (in counts / sq. arcmin) + stamp_size: Size of the desired stamp (in arcseconds) + max_shift: Magnitude of maximum value of shift. If None, then centroids can fall + anywhere within the image. (in arcseconds) + seed: Seed to initialize randomness for reproducibility. + min_mag: Minimum magnitude allowed in samples + max_mag: Maximum magnitude allowed in samples. + mag_name: Name of the magnitude column in the catalog. + """ + super().__init__(max_number=max_number, min_number=min_number, seed=seed) + self.stamp_size = stamp_size + self.min_mag, self.max_mag = min_mag, max_mag + self.mag_name = mag_name + self.max_shift = self.stamp_size / 2 if not max_shift else max_shift + + # only within area where sources are allowed + self.exp_count = density * (self.max_shift * 2 / 60) ** 2 + + def __call__(self, table: Table) -> Table: + """Applies default sampling to catalog. + + Returns an astropy table with entries corresponding to a blend centered close to postage + stamp center. + + Number of objects per blend is set at a random integer between ``self.min_number`` + and ``self.max_number``. The blend table is then randomly sampled entries + from the table after magnitude selection cuts. The centers are randomly + distributed within ``self.max_shift`` of the center of the postage stamp. + + Here even though the galaxies are sampled from a CatSim catalog, their spatial + location are not representative of real blends. + + Args: + table: Table containing entries corresponding to galaxies + from which to sample. + + Returns: + Astropy.table with entries corresponding to one blend. + """ + if self.mag_name not in table.colnames: + raise ValueError(f"Catalog must have '{self.mag_name}' column.") + + number_of_objects = np.clip( + self.rng.poisson(self.exp_count), self.min_number, self.max_number + ) + + cond = (table[self.mag_name] <= self.max_mag) & (table[self.mag_name] > self.min_mag) + (q,) = np.where(cond) + blend_table = table[self.rng.choice(q, size=number_of_objects)] + + blend_table["ra"] = 0.0 + blend_table["dec"] = 0.0 + dx, dy = _get_random_center_shift(number_of_objects, self.max_shift, self.rng) + blend_table["ra"] += dx + blend_table["dec"] += dy + _raise_error_if_out_of_bounds(blend_table["ra"], blend_table["dec"], self.stamp_size) + + return blend_table + + class BasicSampling(SamplingFunction): """Example of basic sampling function features. diff --git a/btk/survey.py b/btk/survey.py index 26d5c3d60..a659aed64 100644 --- a/btk/survey.py +++ b/btk/survey.py @@ -1,4 +1,5 @@ """Contains information for surveys available in BTK.""" + import os import random as rd from typing import Callable, List, Optional, Tuple, Union diff --git a/btk/utils.py b/btk/utils.py index 7b1f08ceb..663f0bc98 100644 --- a/btk/utils.py +++ b/btk/utils.py @@ -1,4 +1,5 @@ """Contains utility functions, including functions for loading saved results.""" + from astropy.table import Table from astropy.wcs import WCS diff --git a/poetry.lock b/poetry.lock index dc19f214f..3d9a18e46 100644 --- a/poetry.lock +++ b/poetry.lock @@ -13,19 +13,20 @@ files = [ [[package]] name = "anyio" -version = "4.1.0" +version = "4.2.0" description = "High level compatibility 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@@ -1,4 +1,5 @@ """Configuration file for tests.""" + from pathlib import Path import pytest diff --git a/tests/test_pipeline.py b/tests/test_pipeline.py index 63810aeca..664af7bf6 100644 --- a/tests/test_pipeline.py +++ b/tests/test_pipeline.py @@ -204,3 +204,25 @@ def test_scarlet(data_dir): deblend_batch = deblender(blend_batch, reference_catalogs=blend_batch.catalog_list) n_failures = np.sum([len(cat) == 0 for cat in deblend_batch.catalog_list], axis=0) assert n_failures <= 3 + + +def test_density_sampling(data_dir): + """Test new density sampling function.""" + catalog = btk.catalog.CatsimCatalog.from_file(data_dir / "input_catalog.fits") + + sampling_function = btk.sampling_functions.DensitySampling( + max_number=50, + min_number=1, + stamp_size=24, + max_shift=10, + min_mag=-np.inf, + max_mag=27.3, + seed=SEED, + ) + + for _ in range(10): + blends = sampling_function(catalog.get_raw_catalog()) + + assert 1 <= len(blends) <= 50 + assert np.all(-10 <= blends["ra"]) & np.all(blends["ra"] <= 10) + assert np.all(-10 <= blends["dec"]) & np.all(blends["dec"] <= 10)