diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 04135c131..89a1ad8fa 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -47,7 +47,7 @@ jobs: - name: Install poetry dependencies run: | poetry run pip install Cython - poetry install --extras "galsim-hub scarlet" + poetry install --extras "scarlet" poetry run pip install git+https://github.com/pmelchior/scarlet - name: Run Tests @@ -56,7 +56,7 @@ jobs: - name: Run notebooks run: | - poetry run pytest --nbval notebooks --sanitize-with tests/sanitize.cfg --ignore "notebooks/01c-galsim_hub_tutorial.ipynb" --ignore "notebooks/01b-scarlet-measure.ipynb" + poetry run pytest --nbval notebooks --sanitize-with tests/sanitize.cfg --ignore "notebooks/01b-scarlet-measure.ipynb" - name: Upload coverage to Codecov uses: codecov/codecov-action@v1 diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 5c2b45837..86c793835 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -34,7 +34,7 @@ poetry shell pre-commit install ``` -If you have any problems with the installation, they are probably due to `galsim`. It is recommended that you follow the instructions for [installing galsim](https://galsim-developers.github.io/GalSim/_build/html/install.html) first (inside the `btk37` conda environment), and then try again. Another potential issue might be `tensorflow` and/or `galsim_hub`, if you suspect that might be the problem please create an issue in the BTK github. Note that these two dependencies only work on `python 3.7`. +If you have any problems with the installation, they are probably due to `galsim`. It is recommended that you follow the instructions for [installing galsim](https://galsim-developers.github.io/GalSim/_build/html/install.html) first (inside the `btk37` conda environment), and then try again. ## Pull Requests diff --git a/btk/draw_blends.py b/btk/draw_blends.py index fddb621de..814f17dd9 100644 --- a/btk/draw_blends.py +++ b/btk/draw_blends.py @@ -9,7 +9,6 @@ import galsim import numpy as np from astropy.table import Column -from astropy.table import Table from btk import DEFAULT_SEED from btk.create_blend_generator import BlendGenerator @@ -330,10 +329,10 @@ def render_mini_batch(self, blend_list, psf, wcs, survey, seedseq_minibatch, ext survey (dict): Dictionary containing survey information. seedseq_minibatch (numpy.random.SeedSequence): Numpy object for generating random seeds (for the noise generation). - extra_data: This field can be used if some data need to be generated + extra_data: This field can be used if some data needs to be generated before getting to the step where single galaxies are drawn. It should - have a "shape" of (batch_size,n_blend,...) where n_blend is the number - of objects in a blend. See GalsimHubGenerator for an example of usage. + have a "shape" of (batch_size, n_blend,...) where n_blend is the number + of objects in a blend. Returns: `numpy.ndarray` of blend images and isolated galaxy images, along with @@ -542,107 +541,3 @@ def render_single(self, entry, filt, psf, survey, extra_data): gal_conv = gal_conv.shift(entry["ra"], entry["dec"]) return gal_conv.drawImage(nx=pix_stamp_size, ny=pix_stamp_size, scale=survey.pixel_scale) - - -class GalsimHubGenerator(DrawBlendsGenerator): - """Implementation of DrawBlendsGenerator for drawing galaxies simulated with galsim_hub. - - Galsim Hub (https://github.com/McWilliamsCenter/galsim_hub) is a framework - for generating real-looking galaxies using deep learning models. - """ - - compatible_catalogs = ("CosmosCatalog",) - - def check_compatibility(self, survey): - """Checks the compatibility between the catalog and a given survey. - - Args: - survey (btk.survey.Survey): Survey to check - """ - if type(self.catalog).__name__ not in self.compatible_catalogs: - raise ValueError( - f"The catalog provided is of the wrong type. The types of " - f"catalogs available for the {type(self).__name__} are {self.compatible_catalogs}" - ) - - def __init__( - self, - catalog, - sampling_function, - surveys: list, - batch_size=8, - stamp_size=24, - cpus=1, - verbose=False, - add_noise=True, - shifts=None, - indexes=None, - channels_last=False, - galsim_hub_model="hub:Lanusse2020", - param_names=["flux_radius", "mag_auto", "zphot"], - save_path=None, - seed=DEFAULT_SEED, - ): # noqa: D417 - """Initializes the GalsimHubGenerator class. - - Args: - galsim_hub_model (str): Source of the model to use. Can be - either a distant model or a local one, see the - galsim_hub repo for more information. - param_names (list): list of the parameters with which - the generation is parametrized; this is unique to - each model. - """ - super().__init__( - catalog, - sampling_function, - surveys, - batch_size=batch_size, - stamp_size=stamp_size, - cpus=cpus, - verbose=verbose, - add_noise=add_noise, - shifts=shifts, - indexes=indexes, - channels_last=channels_last, - save_path=save_path, - seed=seed, - ) - import galsim_hub - - self.galsim_hub_model = galsim_hub.GenerativeGalaxyModel(galsim_hub_model) - self.param_names = param_names - - def render_mini_batch(self, blend_list, psf, wcs, survey, seed): - """Returns isolated and blended images for blend catalogs in blend_list. - - Here we generate the images for all galaxies in the batch at the same - time, since galsim_hub is optimized for batch generation. - """ - galsim_hub_params = Table() - for p in self.param_names: - column = Column(np.concatenate([blend[p] for blend in blend_list]), p) - galsim_hub_params.add_column(column) - - base_images = self.galsim_hub_model.sample(galsim_hub_params) - base_images_l = [] - index = 0 - for blend in blend_list: - base_images_l.append(base_images[index : index + len(blend)]) - index += len(blend) - - return super().render_mini_batch(blend_list, psf, wcs, survey, seed, base_images_l) - - def render_single(self, entry, filt, psf, survey, extra_data): - """Returns the Galsim Image of an isolated galaxy.""" - base_image = extra_data - base_image = galsim.Convolve(base_image, psf) - gal_flux = get_flux(entry["ref_mag"], filt, survey) - base_image = base_image.withFlux(gal_flux) - base_image = base_image.shift(entry["ra"], entry["dec"]) - - pix_stamp_size = int(self.stamp_size / survey.pixel_scale) - galaxy_image = base_image.drawImage( - nx=pix_stamp_size, ny=pix_stamp_size, scale=survey.pixel_scale, dtype=np.float64 - ) - return galaxy_image diff --git a/btk/sampling_functions.py b/btk/sampling_functions.py index cd97c71ce..f926f4bc7 100644 --- a/btk/sampling_functions.py +++ b/btk/sampling_functions.py @@ -129,70 +129,6 @@ def __call__(self, table, shifts=None, indexes=None): return blend_table -class DefaultSamplingGalsimHub(SamplingFunction): - """Default sampling function used for producing blend tables, esp. for galsim_hub.""" - - def __init__(self, max_number=2, stamp_size=24.0, maxshift=None, seed=DEFAULT_SEED): - """Initialize default sampling function for galsim_hub. - - Args: - max_number (int): Defined in parent class - stamp_size (float): Size of the desired stamp. - maxshift (float): Magnitude of maximum value of shift. If None then it - is set as one-tenth the stamp size. (in arcseconds) - seed (int): Seed to initialize randomness for reproducibility. - """ - super().__init__(max_number, seed) - self.stamp_size = stamp_size - self.maxshift = maxshift if maxshift else self.stamp_size / 10.0 - - @property - def compatible_catalogs(self): - """Defined in parent class.""" - return "CosmosCatalog" - - def __call__(self, table, shifts=None, indexes=None): - """Method returning a blend sample from table. - - This sampling function is almost identical to the default one, except that an - additionnal cut on the flux radius is applied. This is done to avoid having - galaxies too large being selected, as generating large galaxies causes artifacts - in galsim_hub images. - - Args: - table (Astropy.table): Table containing entries corresponding to galaxies - from which to sample. - shifts (list): Contains arbitrary shifts to be applied instead of random ones. - Should of the form [dx,dy] where dx and dy are the lists - containing the x and y shifts. - indexes (list): Contains the indexes of the galaxies to use. - - Returns: - Astropy.table with entries corresponding to one blend. - """ - number_of_objects = self.rng.integers(1, self.max_number + 1) - (q,) = np.where((table["ref_mag"] <= 25.3) & (table["flux_radius"] <= 24.0)) - - if indexes is None: - blend_table = table[self.rng.choice(q, size=number_of_objects)] - else: - blend_table = table[indexes] - blend_table["ra"] = 0.0 - blend_table["dec"] = 0.0 - if shifts is None: - dx, dy = _get_random_center_shift(number_of_objects, self.maxshift, self.rng) - else: - dx, dy = shifts - blend_table["ra"] += dx - blend_table["dec"] += dy - - if np.any(blend_table["ra"] > self.stamp_size / 2.0) or np.any( - blend_table["dec"] > self.stamp_size / 2.0 - ): - warnings.warn("Object center lies outside the stamp") - return blend_table - - class BasicSampling(SamplingFunction): """Example of basic sampling function features. diff --git a/conf/config.yaml b/conf/config.yaml index fec14d633..888bf3aed 100644 --- a/conf/config.yaml +++ b/conf/config.yaml @@ -25,14 +25,6 @@ max_shift: Null add_noise: True channels_last: False -# galsim hub -galsim_hub: - model: "hub:Lanusse2020" - param_names: - - "flux_radius" - - "mag_auto" - - "zphot" - # measure measure_kwargs: Null measure_functions: diff --git a/conf/draw_blends/galsim_hub.yaml b/conf/draw_blends/galsim_hub.yaml deleted file mode 100644 index 0bb81eb6f..000000000 --- a/conf/draw_blends/galsim_hub.yaml +++ /dev/null @@ -1,16 +0,0 @@ -_target_: btk.draw_blends.GalsimHubGenerator -catalog: ${catalog} -sampling: ${sampling} -surveys: Null -batch_size: ${batch_size} -stamp_size: ${stamp_size} -cpus: ${cpus} -verbose: ${verbose} -add_noise: ${add_noise} -shifts: Null -indexes: Null -channels_last: ${channels_last} -galsim_hub_model: ${galsim_hub_model} -param_names: ${param_names} -save_path: ${save_path} -seed: ${seed} diff --git a/conf/hydra/help/btk_help.yaml b/conf/hydra/help/btk_help.yaml index 383eee48b..3abe0c360 100644 --- a/conf/hydra/help/btk_help.yaml +++ b/conf/hydra/help/btk_help.yaml @@ -36,7 +36,7 @@ template: |- Here are all the available options for the CLI. * sampling: Specify the sampling function to be used, options: - {default, galsim_hub, group_sampling, group_sampling_numbered} + {default, group_sampling, group_sampling_numbered} * catalog: Attribute group consisting of two sub-attributes. * catalog: Name of the BTK catalog class, options: {catsim, cosmos} @@ -61,7 +61,7 @@ template: |- add your own config file to conf/surveys. See the CLI section of the tutorial for more details. - * draw_blends: Which draw_blend_generator to use, options are {catsim, cosmos, galsim_hub} + * draw_blends: Which draw_blend_generator to use, options are {catsim, cosmos} * save_path: Absolute path to a (preferably) empty directory where you would like to save results of running BTK. @@ -80,13 +80,6 @@ template: |- * channels_last: Whether to use have images in channel last format (True) or not (False). - * galsim_hub: Attribute group consisting of options: - * model: Which galsim_hub model to use (default: 'hub:Lanusse2020') - * param_names: list of the parameters with which the generation is parametrized; this - is unique to each model (default: `['flux_radius', 'mag_auto', 'zphot']`). - - NOTE: This flag has no effect unless `draw_blends=galsim_hub` - * measure_kwargs: Dictionary or list of dictionaries containing the keyword arguments to be passed in to each measure_function. diff --git a/conf/sampling/galsim_hub.yaml b/conf/sampling/galsim_hub.yaml deleted file mode 100644 index 7a15a9321..000000000 --- a/conf/sampling/galsim_hub.yaml +++ /dev/null @@ -1,5 +0,0 @@ -_target_: btk.sampling_functions.DefaultSamplingGalsimHub -max_number: ${max_number} -stamp_size: ${stamp_size} -maxshift: ${max_shift} -seed: ${seed} diff --git a/docs/source/catalog.rst b/docs/source/catalog.rst index ffd2185c9..1d9d4cf26 100644 --- a/docs/source/catalog.rst +++ b/docs/source/catalog.rst @@ -16,11 +16,6 @@ The Cosmic Evolution Survey (COSMOS) is an astronomical survey based on multiple BTK includes an implementation of COSMOS real galaxy rendering, providing the possibility to get more realistic blends. -Galsim_Hub ------------ -Galsim_Hub is a framework for deep learning image generation models, developped by François Lanusse, which is available `in this page `_ . - -BTK supports drawing galaxies generated using any galsim_hub compatible model; the default one generates COSMOS-like galaxies and is described in `this paper `_, but the BTK implementation should be compatible with any model. .. Cosmo DC2 .. --------- diff --git a/docs/source/cli.rst b/docs/source/cli.rst index 797032d5d..b6144e3f2 100644 --- a/docs/source/cli.rst +++ b/docs/source/cli.rst @@ -32,8 +32,6 @@ Here is a list of all the options of BTK you can customize directly from the CLI - default - - galsim_hub - - group_sampling - group_sampling_numbered @@ -81,8 +79,6 @@ Here is a list of all the options of BTK you can customize directly from the CLI - cosmos - - galsim_hub - * ``save_path``: Absolute path to a (preferably) empty directory where you would like to save results of running BTK. * ``cpus``: Number of cpus you would like to use for multiprocessing. @@ -99,12 +95,6 @@ Here is a list of all the options of BTK you can customize directly from the CLI * ``channels_last``: Whether to use have images in channel last format (True) or not (False). -* ``galsim_hub``: Attribute group consisting of options: - - - ``model``: Which galsim_hub model to use (default: 'hub:Lanusse2020') - - - ``param_names``: list of the parameters with which the generation is parametrized; this is unique to each model (default: ``['flux_radious, 'mag_auto', 'zphot']``). **NOTE**: This flag is ignored unless ``draw_blends=galsim_hub`` - * ``measure_kwargs``: Dictionary or list of dictionaries containing the keyword arguments to be passed in to each measure_function. * ``measure_functions``: List of measure_functions to be ran, options: diff --git a/docs/source/install.rst b/docs/source/install.rst index fc88efff4..b259f3a86 100644 --- a/docs/source/install.rst +++ b/docs/source/install.rst @@ -50,14 +50,10 @@ This should install all other missing dependencies if necessary. You can then im Optional packages ------------------------------ -BTK comes with two optional set of dependencies that can be installed: ``galsim_hub`` and ``scarlet``. You can install them alongside ``btk`` as follows: +BTK comes with an optional set of dependencies that can be installed for ``scarlet``. You can install them alongside ``btk`` as follows: .. code-block:: - # install galsim_hub and its dependencies. - # NOTE: it only works on python3.7 - pip install blending_toolkit[galsim_hub] - # install latest version of scarlet and its dependencies. pip install blending_toolkit[scarlet] pip install git+https://github.com/pmelchior/scarlet diff --git a/docs/source/tutorials.rst b/docs/source/tutorials.rst index fbd09821d..294095adc 100644 --- a/docs/source/tutorials.rst +++ b/docs/source/tutorials.rst @@ -535,26 +535,6 @@ However, BTK still retrieves the ``flux_radius`` information from this catalog, 4. (optional) One of the two catalogs can contain multiband magnitudes using the format just described. - -Galsim_Hub tutorial --------------------- - -BTK supports galaxy image generation with ``galsim_hub``; please refer to `this page `_ for more details on ``galsim_hub``. Please note that ``galsim_hub`` only works with ``python 3.7``. - -The steps for using the galsim_hub generation are very similar to those from the previous section. Before starting this tutorial, you must install ``galsim_hub``, which can be done using pip. - -:: - - pip install galsim_hub - -Alternatively, you can optionally install ``galsim_hub`` along with BTK: - -:: - - pip install btk[galsim-hub] - -You can find a notebook version of this tutorial in this `link `_. - SCARLET implementation ----------------------- diff --git a/notebooks/01c-galsim_hub_tutorial.ipynb b/notebooks/01c-galsim_hub_tutorial.ipynb deleted file mode 100644 index 880cdb6dc..000000000 --- a/notebooks/01c-galsim_hub_tutorial.ipynb +++ /dev/null @@ -1,234 +0,0 @@ -{ - "cells": [ - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "## Setup\n", - "\n", - "Importing the relevant packages" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2021-07-16T19:26:20.188227Z", - "start_time": "2021-07-16T19:26:20.124726Z" - } - }, - "outputs": [], - "source": [ - "# Autoreload packages in case they change.\n", - "%load_ext autoreload\n", - "%autoreload 2" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2021-07-16T19:26:20.303409Z", - "start_time": "2021-07-16T19:26:20.252625Z" - } - }, - "outputs": [], - "source": [ - "%matplotlib inline\n", - "import matplotlib.pyplot as plt\n", - "import numpy as np\n", - "import os\n", - "import sys" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2021-07-16T19:26:20.435227Z", - "start_time": "2021-07-16T19:26:20.387371Z" - } - }, - "outputs": [], - "source": [ - "import btk\n", - "import btk.plot_utils\n", - "import btk.survey\n", - "import btk.draw_blends\n", - "import btk.catalog\n", - "import btk.sampling_functions\n", - "import astropy.table" - ] - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "## Drawing blends with galsim_hub\n", - "\n", - "BTK supports galaxy image generation with galsim_hub; please refer to the catalog page of the documentation for more details on galsim_hub. The steps for using the galsim_hub generation are very similar to those from the previous section. Before starting this tutorial, you must install galsim_hub, which can be done using pip.\n", - "\n", - "First, you should use the `CosmosCatalog` catalog instead of the Catsim one. While galsim_hub only require parameters for the image generation, we have chosen to use COSMOS as the source of those parameters so as to get a realistic distribution of those parameters. We have included a small sample of the catalog in BTK, and advise you to download the full catalog (see the documentation) for better results." - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2021-07-16T19:26:20.780766Z", - "start_time": "2021-07-16T19:26:20.685000Z" - } - }, - "outputs": [], - "source": [ - "COSMOS_CATALOG_PATHS = [\n", - "\"../data/cosmos/real_galaxy_catalog_23.5_example.fits\",\n", - "\"../data/cosmos/real_galaxy_catalog_23.5_example_fits.fits\",\n", - "]\n", - "catalog = btk.catalog.CosmosCatalog.from_file(COSMOS_CATALOG_PATHS)" - ] - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "We then instantiate the sampling function; you should use the one specific for galsim_hub, which includes a cut on the size of the galaxies, as artifacts tend to appear when trying to generate galaxies which are too big." - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2021-07-16T19:26:21.959128Z", - "start_time": "2021-07-16T19:26:21.556819Z" - } - }, - "outputs": [], - "source": [ - "stamp_size = 24.0\n", - "sampling_function = btk.sampling_functions.DefaultSamplingGalsimHub(stamp_size=stamp_size)\n", - "survey = btk.survey.get_surveys(\"Rubin\")" - ] - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "Then we can instantiate the `DrawBlendsGenerator` with the survey of your choice. Please bear in mind that while BTK will draw the images in any band you desire, galsim_hub does not generate a SED for the galaxy; this means that the magnitude will be inacurrate in any other band than the one generated by the galsim_hub model you use (by default `\"hub:Lanusse2020\"`)." - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2021-07-16T19:26:24.250729Z", - "start_time": "2021-07-16T19:26:22.370085Z" - } - }, - "outputs": [], - "source": [ - "draw_generator = btk.draw_blends.GalsimHubGenerator(\n", - " catalog,\n", - " sampling_function,\n", - " survey,\n", - " batch_size=8,\n", - " stamp_size=stamp_size,\n", - " cpus=1,\n", - " add_noise=True,\n", - " galsim_hub_model=\"hub:Lanusse2020\", #May be replaced by any model compatible with galsim_hub\n", - " param_names=[\"flux_radius\", \"mag_auto\", \"zphot\"], #Name of the parameters; they must match with the model you provide\n", - " )" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2021-07-16T19:26:33.598011Z", - "start_time": "2021-07-16T19:26:25.332695Z" - } - }, - "outputs": [], - "source": [ - "batch = next(draw_generator)\n", - "blend_images = batch['blend_images']\n", - "blend_list = batch['blend_list']\n", - "btk.plot_utils.plot_blends(blend_images, blend_list, limits=(30,90))" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": {}, - "outputs": [], - "source": [] - } - ], - "metadata": { - "kernelspec": { - "display_name": "Python 3 (ipykernel)", - "language": "python", - "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.7.10" - }, - "latex_envs": { - "LaTeX_envs_menu_present": true, - "autoclose": false, - "autocomplete": true, - "bibliofile": "biblio.bib", - "cite_by": "apalike", - "current_citInitial": 1, - "eqLabelWithNumbers": true, - "eqNumInitial": 1, - "hotkeys": { - "equation": "meta-shift-y" - }, - "labels_anchors": false, - "latex_user_defs": false, - "report_style_numbering": false, - "user_envs_cfg": false - }, - "toc": { - "base_numbering": 1, - "nav_menu": {}, - "number_sections": false, - "sideBar": true, - "skip_h1_title": false, - "title_cell": "Table of Contents", - "title_sidebar": "Contents", - "toc_cell": false, - "toc_position": { - "height": "811.111px", - "left": "216px", - "top": "257.052px", - "width": "365.764px" - }, - "toc_section_display": true, - "toc_window_display": true - }, - "toc-autonumbering": true, - "toc-showcode": false, - "toc-showmarkdowntxt": false, - "toc-showtags": false - }, - "nbformat": 4, - "nbformat_minor": 4 -} diff --git a/notebooks/README.md b/notebooks/README.md index 39cabffd1..3a7eb8373 100644 --- a/notebooks/README.md +++ b/notebooks/README.md @@ -4,7 +4,7 @@ This folder contains various notebooks demonstrating the features of the Blendin We advise you to follow the notebooks by order of difficulty : - the intro notebook contains a general introduction to BTK and demonstrates most of the features -- the cosmos, scarlet and galsim_hub notebooks showcase some specific uses of BTK, for generating images using galaxies from the COSMOS dataset or generated by [galsim_hub](https://github.com/McWilliamsCenter/galsim_hub) and for making measurements with [SCARLET](https://github.com/pmelchior/scarlet) +- the cosmos and scarlet notebooks showcase some specific uses of BTK, for generating images using galaxies from the COSMOS dataset and for making measurements with [SCARLET](https://github.com/pmelchior/scarlet) respectively. - the multi and custom tutorials introduce advanced features of BTK, including how to customize various parts of BTK for your needs. **NOTE:** Some of the interactive features in the notebooks work only in standard jupyter notebooks and not in jupyterlab. diff --git a/poetry.lock b/poetry.lock index 2cf231d1e..cd32fce87 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,14 +1,3 @@ -[[package]] -name = "absl-py" -version = "0.14.1" -description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." -category = "main" -optional = true -python-versions = "*" - -[package.dependencies] -six = "*" - [[package]] name = "alabaster" version = "0.7.12" @@ -43,11 +32,11 @@ python-versions = "*" [[package]] name = "argcomplete" -version = "1.12.3" +version = "2.0.0" description = "Bash tab completion for argparse" category = "main" optional = false -python-versions = "*" +python-versions = ">=3.6" [package.dependencies] importlib-metadata = {version = ">=0.23,<5", markers = "python_version == \"3.7\""} @@ -57,20 +46,36 @@ test = ["coverage", "flake8", "pexpect", "wheel"] [[package]] name = "argon2-cffi" -version = "21.1.0" +version = "21.3.0" description = "The secure Argon2 password hashing algorithm." category = "main" optional = false -python-versions = ">=3.5" +python-versions = ">=3.6" [package.dependencies] -cffi = ">=1.0.0" +argon2-cffi-bindings = "*" +typing-extensions = {version = "*", markers = "python_version < \"3.8\""} [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "furo", "wheel", "pre-commit"] -docs = ["sphinx", "furo"] +dev = ["pre-commit", "cogapp", "tomli", "coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "sphinx-notfound-page", "furo"] +docs = ["sphinx", "sphinx-notfound-page", "furo"] tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"] +[[package]] +name = "argon2-cffi-bindings" +version = "21.2.0" +description = "Low-level CFFI bindings for Argon2" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +cffi = ">=1.0.1" + +[package.extras] +dev = ["pytest", "cogapp", "pre-commit", "wheel"] +tests = ["pytest"] + [[package]] name = "aspy.refactor-imports" version = "2.2.0" @@ -82,14 +87,6 @@ python-versions = ">=3.6.1" [package.dependencies] cached-property = "*" -[[package]] -name = "astor" -version = "0.8.1" -description = "Read/rewrite/write Python ASTs" -category = "main" -optional = true -python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" - [[package]] name = "astropy" version = "4.3.1" @@ -118,17 +115,17 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "attrs" -version = "21.2.0" +version = "21.4.0" description = "Classes Without Boilerplate" category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit"] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"] [[package]] name = "autograd" @@ -161,21 +158,6 @@ category = "main" optional = false python-versions = "*" -[[package]] -name = "backports.entry-points-selectable" -version = "1.1.0" -description = "Compatibility shim providing selectable entry points for older implementations" -category = "dev" -optional = false -python-versions = ">=2.7" - -[package.dependencies] -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} - -[package.extras] -docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] -testing = ["pytest (>=4.6)", "pytest-flake8", "pytest-cov", "pytest-black (>=0.3.7)", "pytest-mypy", "pytest-checkdocs (>=2.4)", "pytest-enabler (>=1.0.1)"] - [[package]] name = "black" version = "20.8b1" @@ -221,7 +203,7 @@ python-versions = "*" [[package]] name = "certifi" -version = "2021.5.30" +version = "2021.10.8" description = "Python package for providing Mozilla's CA Bundle." category = "dev" optional = false @@ -229,7 +211,7 @@ python-versions = "*" [[package]] name = "cffi" -version = "1.14.6" +version = "1.15.0" description = "Foreign Function Interface for Python calling C code." category = "main" optional = false @@ -248,7 +230,7 @@ python-versions = ">=3.6.1" [[package]] name = "charset-normalizer" -version = "2.0.6" +version = "2.0.10" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." category = "dev" optional = false @@ -259,7 +241,7 @@ unicode_backport = ["unicodedata2"] [[package]] name = "click" -version = "8.0.1" +version = "8.0.3" description = "Composable command line interface toolkit" category = "dev" optional = false @@ -279,7 +261,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "coverage" -version = "6.0" +version = "6.2" description = "Code coverage measurement for Python" category = "dev" optional = false @@ -290,18 +272,15 @@ toml = ["tomli"] [[package]] name = "cycler" -version = "0.10.0" +version = "0.11.0" description = "Composable style cycles" category = "main" optional = false -python-versions = "*" - -[package.dependencies] -six = "*" +python-versions = ">=3.6" [[package]] name = "cython" -version = "0.29.24" +version = "0.29.26" description = "The Cython compiler for writing C extensions for the Python language." category = "dev" optional = false @@ -309,7 +288,7 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "debugpy" -version = "1.5.0" +version = "1.5.1" description = "An implementation of the Debug Adapter Protocol for Python" category = "main" optional = false @@ -333,7 +312,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "distlib" -version = "0.3.3" +version = "0.3.4" description = "Distribution utilities" category = "dev" optional = false @@ -357,11 +336,11 @@ python-versions = ">=2.7" [[package]] name = "filelock" -version = "3.3.0" +version = "3.4.2" description = "A platform independent file lock." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.extras] docs = ["furo (>=2021.8.17b43)", "sphinx (>=4.1)", "sphinx-autodoc-typehints (>=1.12)"] @@ -383,14 +362,14 @@ pyflakes = ">=2.3.0,<2.4.0" [[package]] name = "flake8-absolute-import" -version = "1.0" +version = "1.0.0.1" description = "flake8 plugin to require absolute imports" category = "dev" optional = false python-versions = ">=3.4" [package.dependencies] -flake8 = ">=3.0" +flake8 = ">=3.7" [[package]] name = "future" @@ -414,63 +393,6 @@ astropy = "*" numpy = "*" pybind11 = ">=2.2" -[[package]] -name = "galsim-hub" -version = "0.0.1rc4" -description = "Support for Tensorflow Hub modules in GalSim" -category = "main" -optional = true -python-versions = "*" - -[package.dependencies] -galsim = "*" -tensorflow_hub = "*" - -[[package]] -name = "gast" -version = "0.2.2" -description = "Python AST that abstracts the underlying Python version" -category = "main" -optional = true -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" - -[[package]] -name = "google-pasta" -version = "0.2.0" -description = "pasta is an AST-based Python refactoring library" -category = "main" -optional = true -python-versions = "*" - -[package.dependencies] -six = "*" - -[[package]] -name = "grpcio" -version = "1.41.0" -description = "HTTP/2-based RPC framework" -category = "main" -optional = true -python-versions = "*" - -[package.dependencies] -six = ">=1.5.2" - -[package.extras] -protobuf = ["grpcio-tools (>=1.41.0)"] - -[[package]] -name = "h5py" -version = "2.10.0" -description = "Read and write HDF5 files from Python" -category = "main" -optional = true -python-versions = "*" - -[package.dependencies] -numpy = ">=1.7" -six = "*" - [[package]] name = "hydra-core" version = "1.1.1" @@ -486,18 +408,18 @@ omegaconf = ">=2.1.0,<2.2.0" [[package]] name = "identify" -version = "2.3.0" +version = "2.4.1" description = "File identification library for Python" category = "dev" optional = false python-versions = ">=3.6.1" [package.extras] -license = ["editdistance-s"] +license = ["ukkonen"] [[package]] name = "idna" -version = "3.2" +version = "3.3" description = "Internationalized Domain Names in Applications (IDNA)" category = "dev" optional = false @@ -505,7 +427,7 @@ python-versions = ">=3.5" [[package]] name = "imageio" -version = "2.9.0" +version = "2.13.5" description = "Library for reading and writing a wide range of image, video, scientific, and volumetric data formats." category = "main" optional = false @@ -513,18 +435,24 @@ python-versions = ">=3.5" [package.dependencies] numpy = "*" -pillow = "*" +pillow = ">=8.3.2" [package.extras] -ffmpeg = ["imageio-ffmpeg"] +build = ["wheel"] +dev = ["invoke", "pytest", "pytest-cov", "black", "flake8"] +docs = ["sphinx", "numpydoc", "pydata-sphinx-theme"] +ffmpeg = ["imageio-ffmpeg", "psutil"] fits = ["astropy"] -full = ["astropy", "gdal", "imageio-ffmpeg", "itk"] +full = ["astropy", "black", "flake8", "gdal", "imageio-ffmpeg", "invoke", "itk", "numpydoc", "psutil", "pydata-sphinx-theme", "pytest", "pytest-cov", "sphinx", "tifffile", "wheel"] gdal = ["gdal"] itk = ["itk"] +linting = ["black", "flake8"] +test = ["invoke", "pytest", "pytest-cov"] +tifffile = ["tifffile"] [[package]] name = "imagesize" -version = "1.2.0" +version = "1.3.0" description = "Getting image size from png/jpeg/jpeg2000/gif file" category = "dev" optional = false @@ -532,11 +460,11 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "importlib-metadata" -version = "4.8.1" +version = "4.10.0" description = "Read metadata from Python packages" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""} @@ -545,11 +473,11 @@ zipp = ">=0.5" [package.extras] docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] perf = ["ipython"] -testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] [[package]] name = "importlib-resources" -version = "5.2.2" +version = "5.4.0" description = "Read resources from Python packages" category = "main" optional = false @@ -560,7 +488,7 @@ zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} [package.extras] docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] -testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-black (>=0.3.7)", "pytest-mypy"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-black (>=0.3.7)", "pytest-mypy"] [[package]] name = "iniconfig" @@ -572,7 +500,7 @@ python-versions = "*" [[package]] name = "ipykernel" -version = "6.4.1" +version = "6.6.1" description = "IPython Kernel for Jupyter" category = "main" optional = false @@ -583,19 +511,19 @@ appnope = {version = "*", markers = "platform_system == \"Darwin\""} argcomplete = {version = ">=1.12.3", markers = "python_version < \"3.8.0\""} debugpy = ">=1.0.0,<2.0" importlib-metadata = {version = "<5", markers = "python_version < \"3.8.0\""} -ipython = ">=7.23.1,<8.0" -ipython-genutils = "*" +ipython = ">=7.23.1" jupyter-client = "<8.0" matplotlib-inline = ">=0.1.0,<0.2.0" +nest-asyncio = "*" tornado = ">=4.2,<7.0" -traitlets = ">=4.1.0,<6.0" +traitlets = ">=5.1.0,<6.0" [package.extras] -test = ["pytest (!=5.3.4)", "pytest-cov", "flaky", "nose", "ipyparallel"] +test = ["pytest (!=5.3.4)", "pytest-cov", "flaky", "ipyparallel"] [[package]] name = "ipython" -version = "7.28.0" +version = "7.31.0" description = "IPython: Productive Interactive Computing" category = "main" optional = false @@ -655,7 +583,7 @@ test = ["pytest (>=3.6.0)", "pytest-cov", "mock"] [[package]] name = "jedi" -version = "0.18.0" +version = "0.18.1" description = "An autocompletion tool for Python that can be used for text editors." category = "main" optional = false @@ -666,11 +594,11 @@ parso = ">=0.8.0,<0.9.0" [package.extras] qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] -testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<6.0.0)"] +testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<7.0.0)"] [[package]] name = "jinja2" -version = "3.0.2" +version = "3.0.3" description = "A very fast and expressive template engine." category = "main" optional = false @@ -684,7 +612,7 @@ i18n = ["Babel (>=2.7)"] [[package]] name = "jsonschema" -version = "4.0.1" +version = "4.3.3" description = "An implementation of JSON Schema validation for Python" category = "main" optional = false @@ -693,7 +621,9 @@ python-versions = ">=3.7" [package.dependencies] attrs = ">=17.4.0" importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} +importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""} pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2" +typing-extensions = {version = "*", markers = "python_version < \"3.8\""} [package.extras] format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"] @@ -701,7 +631,7 @@ format_nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339- [[package]] name = "jupyter-client" -version = "7.0.6" +version = "7.1.0" description = "Jupyter protocol implementation and client libraries" category = "main" optional = false @@ -722,7 +652,7 @@ test = ["codecov", "coverage", "ipykernel", "ipython", "mock", "mypy", "pre-comm [[package]] name = "jupyter-core" -version = "4.8.1" +version = "4.9.1" description = "Jupyter core package. A base package on which Jupyter projects rely." category = "main" optional = false @@ -766,38 +696,6 @@ category = "main" optional = false python-versions = ">=3.6" -[[package]] -name = "keras-applications" -version = "1.0.8" -description = "Reference implementations of popular deep learning models" -category = "main" -optional = true -python-versions = "*" - -[package.dependencies] -h5py = "*" -numpy = ">=1.9.1" - -[package.extras] -tests = ["pytest", "pytest-pep8", "pytest-xdist", "pytest-cov"] - -[[package]] -name = "keras-preprocessing" -version = "1.1.2" -description = "Easy data preprocessing and data augmentation for deep learning models" -category = "main" -optional = true -python-versions = "*" - -[package.dependencies] -numpy = ">=1.9.1" -six = ">=1.9.0" - -[package.extras] -image = ["scipy (>=0.14)", "Pillow (>=5.2.0)"] -pep8 = ["flake8"] -tests = ["pandas", "pillow", "tensorflow", "keras", "pytest", "pytest-xdist", "pytest-cov"] - [[package]] name = "kiwisolver" version = "1.3.2" @@ -819,20 +717,6 @@ cffi = "*" future = "*" numpy = "*" -[[package]] -name = "markdown" -version = "3.3.4" -description = "Python implementation of Markdown." -category = "main" -optional = true -python-versions = ">=3.6" - -[package.dependencies] -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} - -[package.extras] -testing = ["coverage", "pyyaml"] - [[package]] name = "markupsafe" version = "2.0.1" @@ -910,7 +794,7 @@ python-versions = "*" [[package]] name = "nbclient" -version = "0.5.4" +version = "0.5.9" description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." category = "main" optional = false @@ -923,13 +807,13 @@ nest-asyncio = "*" traitlets = ">=4.2" [package.extras] -dev = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "bumpversion", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] +dev = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] sphinx = ["Sphinx (>=1.7)", "sphinx-book-theme", "mock", "moto", "myst-parser"] -test = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "bumpversion", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] +test = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] [[package]] name = "nbconvert" -version = "6.2.0" +version = "6.4.0" description = "Converting Jupyter Notebooks" category = "main" optional = false @@ -993,7 +877,7 @@ six = "*" [[package]] name = "nest-asyncio" -version = "1.5.1" +version = "1.5.4" description = "Patch asyncio to allow nested event loops" category = "main" optional = false @@ -1024,7 +908,7 @@ python-versions = "*" [[package]] name = "notebook" -version = "6.4.4" +version = "6.4.6" description = "A web-based notebook environment for interactive computing" category = "main" optional = false @@ -1039,9 +923,10 @@ jupyter-client = ">=5.3.4" jupyter-core = ">=4.6.1" nbconvert = "*" nbformat = "*" +nest-asyncio = ">=1.5" prometheus-client = "*" pyzmq = ">=17" -Send2Trash = ">=1.5.0" +Send2Trash = ">=1.8.0" terminado = ">=0.8.3" tornado = ">=6.1" traitlets = ">=4.2.1" @@ -1072,41 +957,58 @@ antlr4-python3-runtime = "4.8" PyYAML = ">=5.1.0" [[package]] -name = "opt-einsum" -version = "3.3.0" -description = "Optimizing numpys einsum function" +name = "packaging" +version = "21.3" +description = "Core utilities for Python packages" category = "main" -optional = true -python-versions = ">=3.5" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +pyparsing = ">=2.0.2,<3.0.5 || >3.0.5" + +[[package]] +name = "pandas" +version = "1.3.3" +description = "Powerful data structures for data analysis, time series, and statistics" +category = "main" +optional = false +python-versions = ">=3.7.1" [package.dependencies] -numpy = ">=1.7" +numpy = ">=1.17.3" +python-dateutil = ">=2.7.3" +pytz = ">=2017.3" [package.extras] -docs = ["sphinx (==1.2.3)", "sphinxcontrib-napoleon", "sphinx-rtd-theme", "numpydoc"] -tests = ["pytest", "pytest-cov", "pytest-pep8"] +test = ["hypothesis (>=3.58)", "pytest (>=6.0)", "pytest-xdist"] [[package]] -name = "packaging" -version = "21.0" -description = "Core utilities for Python packages" +name = "pandas" +version = "1.3.4" +description = "Powerful data structures for data analysis, time series, and statistics" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7.1" [package.dependencies] -pyparsing = ">=2.0.2" +numpy = {version = ">=1.17.3", markers = "platform_machine != \"aarch64\" and platform_machine != \"arm64\" and python_version < \"3.10\""} +python-dateutil = ">=2.7.3" +pytz = ">=2017.3" + +[package.extras] +test = ["hypothesis (>=3.58)", "pytest (>=6.0)", "pytest-xdist"] [[package]] name = "pandas" -version = "1.3.3" +version = "1.3.5" description = "Powerful data structures for data analysis, time series, and statistics" category = "main" optional = false python-versions = ">=3.7.1" 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["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"] @@ -1222,7 +1124,7 @@ virtualenv = ">=20.0.8" [[package]] name = "prometheus-client" -version = "0.11.0" +version = "0.12.0" description = "Python client for the Prometheus monitoring system." category = "main" optional = false @@ -1233,7 +1135,7 @@ twisted = ["twisted"] [[package]] name = "prompt-toolkit" -version = "3.0.20" +version = "3.0.24" description = "Library for building powerful interactive command lines in Python" category = "main" optional = false @@ -1242,17 +1144,9 @@ python-versions = ">=3.6.2" [package.dependencies] wcwidth = "*" -[[package]] -name = "protobuf" -version = "3.18.1" -description = "Protocol Buffers" -category = "main" -optional = true -python-versions = ">=3.5" - [[package]] name = "proxmin" -version = "0.6.11" +version = "0.6.12" description = "Proximal methods for constrained optimization" category = "main" optional = true @@ -1272,11 +1166,11 @@ python-versions = "*" [[package]] name = "py" -version = "1.10.0" +version = "1.11.0" description = "library with cross-python path, ini-parsing, io, code, log facilities" category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "pybind11" @@ -1299,7 +1193,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "pycparser" -version = "2.20" +version = "2.21" description = "C parser in Python" category = "main" optional = false @@ -1318,7 +1212,7 @@ snowballstemmer = "*" [[package]] name = "pyerfa" -version = "2.0.0" +version = "2.0.0.1" description = "Python bindings for ERFA" category = "main" optional = false @@ -1341,7 +1235,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "pygments" -version = "2.10.0" +version = "2.11.1" description = "Pygments is a syntax highlighting package written in Python." category = "main" optional = false @@ -1349,11 +1243,14 @@ python-versions = ">=3.5" [[package]] name = "pyparsing" -version = "2.4.7" +version = "3.0.6" description = "Python parsing module" category = "main" optional = false -python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" +python-versions = ">=3.6" + +[package.extras] +diagrams = ["jinja2", "railroad-diagrams"] [[package]] name = "pyrsistent" @@ -1422,18 +1319,18 @@ python-versions = "*" [[package]] name = "pywavelets" -version = "1.1.1" +version = "1.2.0" description = "PyWavelets, wavelet transform module" category = "main" optional = false -python-versions = ">=3.5" +python-versions = ">=3.7" [package.dependencies] -numpy = ">=1.13.3" +numpy = ">=1.17.3" [[package]] name = "pywin32" -version = "301" +version = "303" description = "Python for Window Extensions" category = "main" optional = false @@ -1441,7 +1338,7 @@ python-versions = "*" [[package]] name = "pywinpty" -version = "1.1.4" +version = "1.1.6" description = "Pseudo terminal support for Windows from Python." category = "main" optional = false @@ -1449,11 +1346,11 @@ python-versions = ">=3.6" [[package]] name = "pyyaml" -version = "5.4.1" +version = "6.0" description = "YAML parser and emitter for Python" category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" +python-versions = ">=3.6" [[package]] name = "pyzmq" @@ -1469,7 +1366,7 @@ py = {version = "*", markers = "implementation_name == \"pypy\""} [[package]] name = "regex" -version = "2021.9.30" +version = "2021.11.10" description = "Alternative regular expression module, to replace re." category = "dev" optional = false @@ -1488,7 +1385,7 @@ python-versions = ">=3.6.1" [[package]] name = "requests" -version = "2.26.0" +version = "2.27.1" description = "Python HTTP for Humans." category = "dev" optional = false @@ -1587,7 +1484,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "snowballstemmer" -version = "2.1.0" +version = "2.2.0" description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms." category = "dev" optional = false @@ -1706,81 +1603,6 @@ python-versions = ">=3.5" lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] -[[package]] -name = "tensorboard" -version = "1.15.0" -description = "TensorBoard lets you watch Tensors Flow" -category = "main" -optional = true -python-versions = ">= 2.7, != 3.0.*, != 3.1.*" - -[package.dependencies] -absl-py = ">=0.4" -grpcio = ">=1.6.3" -markdown = ">=2.6.8" -numpy = ">=1.12.0" -protobuf = ">=3.6.0" -six = ">=1.10.0" -werkzeug = ">=0.11.15" - -[[package]] -name = "tensorflow" -version = "1.15.5" -description = "TensorFlow is an open source machine learning framework for everyone." -category = "main" -optional = true -python-versions = "*" - -[package.dependencies] -absl-py = ">=0.7.0" -astor = ">=0.6.0" -gast = "0.2.2" -google-pasta = ">=0.1.6" -grpcio = ">=1.8.6" 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