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feat(dynamics): added jsmol #9

Merged
merged 2 commits into from
Dec 14, 2022
Merged

feat(dynamics): added jsmol #9

merged 2 commits into from
Dec 14, 2022

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ivopr
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@ivopr ivopr commented Dec 14, 2022

Added JSmol to preview the free protein selected on Free, ACPYPE and PRODRG dynamics

@ivopr ivopr merged commit 5c8a1e5 into master Dec 14, 2022
@ivopr ivopr deleted the jsmol branch December 14, 2022 19:30
github-actions bot pushed a commit that referenced this pull request Dec 14, 2022
## 1.0.0 (2022-12-14)

### 🧹 Chore

* add missing help description ([e3dae9d](e3dae9d))
* update readme ([6c57ef9](6c57ef9))

### 🐛 Fixes

* add missing parameter ([7db6d12](7db6d12))
* adicionada biblioteca faltante e corrigido caminho de instalação do GROMACS em distribuições Debian ([b8f6b38](b8f6b38))
* another dep fix ([1087928](1087928))
* another dep fix ([7043efd](7043efd))
* another dep fix ([079c4a2](079c4a2))
* broken dynamic info ([b21a456](b21a456))
* calling script from wrong directory ([8e7435c](8e7435c))
* comandos escritos errados após o mdrun ([a28077c](a28077c))
* corrigido comportamento da tela de progressao da dinamica, adicionados novos campos de forca para a acpype ([827b3aa](827b3aa))
* corrigido erro de redirecionamento nas dinamicas ACPYPE ([8d4f7ad](8d4f7ad))
* corrigido nível de permissão para executar o servidor de produção ([4d6f42b](4d6f42b))
* corrigindo email do destinatario ([35c932f](35c932f))
* deps ver ([2d4dbb0](2d4dbb0))
* desmarca a opção de calcular com dupla precisão. temporariamentr desabilitada ([8b7b12f](8b7b12f))
* dinamica prodrg faltando um parametro no comando grompp ([627c508](627c508))
* disable base env activation by default ([e5b994e](e5b994e))
* durante a instalação não compilar o GROMACS caso encontre algum dos binários dele, `gmx` ou `gmx_d` ([ecba303](ecba303))
* erro de permissão na virtualenv ([07a8432](07a8432))
* faltando tradução análise MD ([962ebdc](962ebdc))
* faltando tradução da análise MD ([9f1e048](9f1e048))
* fechando corretamente os arquivos abertos ([6757f55](6757f55))
* geração de comando errada, diminuido valor do nsteps e adicionado a medida da distancia entre a proteina e a borda da caixa ([7806b0c](7806b0c))
* gnerate secret key on install ([20ce54a](20ce54a))
* instalacao do python3.7 no archlinux ([f4f4aa9](f4f4aa9))
* install on arch linux ([809a24f](809a24f))
* install script improved ([c3836f2](c3836f2))
* install.sh não funcionava em debian/ubuntu ([da75f85](da75f85))
* mdp files download ([a055451](a055451))
* moving config initialization ([f4c9062](f4c9062))
* moving config initialization ([7c67965](7c67965))
* porta em produção ([f39fe76](f39fe76))
* remove gcc10 da lista de dependencias do gromacs ([12eb18b](12eb18b))
* **run:** auto install not prompting for  values ([b02bffb](b02bffb))
* running pip install virtualenv without sudo ([abf0494](abf0494))
* tela de minhas dinamicas quebradas por conta da data ([228f636](228f636))
* upload de arquivo quebrado na enzima APO ([8f726eb](8f726eb))
* use curl instead of wget ([d54daa8](d54daa8))
* verifica e pula a compilação do gromacs se jpa estiver instalado ([590240a](590240a))
* virtualenv não estava sendo inicializado corretamente ([8211ca0](8211ca0))
* works flawlessly ([1733a21](1733a21))

### ✨ Features

* add gpu installation support ([e04a623](e04a623))
* add link to recommended example molecule ([e1d3fd0](e1d3fd0))
* add page title for each page and updated analytics gtag ([516e978](516e978))
* adicionado favicon ([1b96fb1](1b96fb1))
* adicionado outro step na lista de execução de dinamicas ([bcf22f6](bcf22f6))
* administrator and no-reply email on OS enviroment instead of plaintext ([d75532d](d75532d))
* coloring installer ([bd7635a](bd7635a))
* do not recreate visualdynamics conda environment ([3bfb3ca](3bfb3ca))
* **dynamics:** added jsmol ([#9](#9)) ([5c8a1e5](5c8a1e5))
* envia email a cada requisição de cadastro bem sucedida ([5429ce3](5429ce3))
* finished one line install ([1cfb1a0](1cfb1a0))
* hide most part of build info during installation ([27851b8](27851b8))
* instalação do gromacs pulada se já instalado ([9288a70](9288a70))
* install reescrito, dependências atualizadas, suporte ao python 3.10 ([d24da7c](d24da7c))
* migrate to miniconda ([8e64626](8e64626))
* modularizaçao do app seguindo o conceito de blueprints do flask ([e339545](e339545))
* servidor WSGI para produção adicionado, evitar usar flask run em produção ([72ce1fd](72ce1fd))
* starting one line install script ([38ad717](38ad717))
* update to fontawesome 6 self hosted ([7f7564c](7f7564c))
* video explicativo para dinamica acpype ([8a30a43](8a30a43))

### 🔁 CI

* add missing dep ([bb54157](bb54157))
* fix packager once again ([95f0c8d](95f0c8d))
* fix using wrong packager ([47f2b98](47f2b98))
* remove unneeded yarn files ([80c97fd](80c97fd))
* trying auto-release ([3d8e293](3d8e293))
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🎉 This PR is included in version 1.0.0 🎉

The release is available on GitHub release

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