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Add batch neighbor counting helper #38

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dburkhardt opened this issue Mar 21, 2019 · 0 comments

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enhancement good first issue help wanted

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dburkhardt commented Mar 21, 2019

Code from Scott.

batch_mix_mat = np.array([[G.kernel[sample_idx==batch_i,:][:,sample_idx==batch_j].sum()
                 for batch_i in np.unique(sample_idx)]
                 for batch_j in np.unique(sample_idx)])
batch_mix_mat = batch_mix_mat / np.sum(batch_mix_mat, axis=1)[:,None]
batch_mix_mat```

dburkhardt added the enhancement label

dburkhardt self-assigned this

scottgigante added good first issue help wanted labels

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