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tar_url and kgx assumption #3

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cmungall opened this issue Sep 2, 2021 · 2 comments
Open

tar_url and kgx assumption #3

cmungall opened this issue Sep 2, 2021 · 2 comments
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enhancement New feature or request

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@cmungall
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cmungall commented Sep 2, 2021

Current:

tar_url: https://kg-hub.berkeleybop.io/kg-covid-19/current/kg-covid-19.tar.gz

I believe this is implicitly a kgx tar, containing nodes and edges tsv

It would be good not to box ourselves in. We may want to later provide a sqlite instance. And although our own tools don't consume it, I think rdfstar could be broadly very impactful.

We could bundle this all in the tar, but we don't want people to download unecessary artefacts

We could have distinct keys:

  • kgx_tgz
  • kgx_sqlite
  • rdfstar
  • kgmeta

or we could do it the same way as the obo metadata where each 'product' is an object

@cmungall cmungall added the enhancement New feature or request label Sep 2, 2021
@justaddcoffee
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@cmungall seems reasonable to capture KGs like rdfstar, even if we can't yet consume it

kgmeta

I don't understand this one - what does that kgmeta key refer to?

@cmungall
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cmungall commented Sep 8, 2021

kgmeta would be a summary of the graph in "kgmeta" format as produced by kgx @sierra-moxon can provide more deets

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