custom_curies.yaml

phenotypic_quality: &phenotypic_quality_block
  category: "biolink:PhenotypicQuality"
  predicate: "biolink:has_phenotype"

phenotypic_capability: &phenotypic_capability_block
  <<: *phenotypic_quality_block
  predicate: "biolink:capable_of"

biological_process: &biological_process_block
  category: "biolink:BiologicalProcess"
  predicate: "biolink:capable_of"

chemical_production: &chemical_production_block
  category: "biolink:ChemicalSubstance"
  predicate: "biolink:produces"

oxygen:
  aerobe: &aerobe_block
    curie: "oxygen:aerobe"
    name: "aerobe"
    <<: *phenotypic_quality_block
  Ox_aerobic: *aerobe_block

  anaerobe: &anaerobe_block
    curie: "oxygen:anaerobe"
    name: "anaerobe"
    <<: *phenotypic_quality_block
  Ox_anaerobic: *anaerobe_block
  obligate_aerobe:
    curie: "oxygen:obligate_aerobe"
    name: "obligate aerobe"
    <<: *phenotypic_quality_block
  microaerophile: &microaerophile_block
    curie: "oxygen:microaerophile"
    name: "microaerophile"
    <<: *phenotypic_quality_block
  Ox_microaerophile: *microaerophile_block
  facultative_anaerobe:
    curie: "oxygen:facultative_anaerobe"
    name: "facultative anaerobe"
    <<: *phenotypic_quality_block
  obligate_anaerobe:
    curie: "oxygen:obligate_anaerobe"
    name: "obligate anaerobe"
    <<: *phenotypic_quality_block
  facultative_aerobe: &facultative_aerobe_block
    curie: "oxygen:facultative_aerobe"
    name: "facultative aerobe"
    <<: *phenotypic_quality_block
  Ox_facultative_aerobe: *facultative_aerobe_block
  aerotolerant:
    curie: "oxygen:aerotolerant"
    name: "aerotolerant"
    <<: *phenotypic_quality_block
  microaerotolerant:
    curie: "oxygen:microaerotolerant"
    name: "microaerotolerant"
    <<: *phenotypic_quality_block
  facultative_aerobe_anaerobe:
    curie: "oxygen:facultative_aerobe_anaerobe"
    name: "facultative aerobe/anaerobe"
    <<: *phenotypic_quality_block

temperature:
  psychrophilic:
    curie: "temperature:psychrophilic"
    name: "psychrophilic"
    <<: *phenotypic_quality_block
  psychrotrophic:
    curie: "temperature:psychrotrophic"
    name: "psychrotrophic"
    <<: *phenotypic_quality_block
  psychrotolerant:
    curie: "temperature:psychrotolerant"
    name: "psychrotolerant"
    <<: *phenotypic_quality_block
  mesophilic:
    curie: "temperature:mesophilic"
    name: "mesophilic"
    <<: *phenotypic_quality_block
  thermotolerant:
    curie: "temperature:thermotolerant"
    name: "thermotolerant"
    <<: *phenotypic_quality_block
  thermophilic:
    curie: "temperature:thermophilic"
    name: "thermophilic"
    <<: *phenotypic_quality_block
  extreme_thermophilic:
    curie: "temperature:extreme_thermophilic"
    name: "extreme thermophilic"
    <<: *phenotypic_quality_block
  hyperthermophilic:
    curie: "temperature:hyperthermophilic"
    name: "hyperthermophilic"
    <<: *phenotypic_quality_block
  extreme_hyperthermophilic:
    curie: "temperature:extreme_hyperthermophilic"
    name: "extreme hyperthermophilic"
    <<: *phenotypic_quality_block

salinity:
  moderately_halophilic:
    curie: "salinity:moderately_halophilic"
    name: "moderately halophilic"
    <<: *phenotypic_quality_block
  halophilic:
    curie: "salinity:halophilic"
    name: "halophilic"
    <<: *phenotypic_quality_block
  non_halophilic:
    curie: "salinity:non_halophilic"
    name: "non halophilic"
    <<: *phenotypic_quality_block
  extremely_halophilic:
    curie: "salinity:extremely_halophilic"
    name: "extremely halophilic"
    <<: *phenotypic_quality_block
  slightly_halophilic:
    curie: "salinity:slightly_halophilic"
    name: "slightly halophilic"
    <<: *phenotypic_quality_block
  haloalkaliphilic:
    curie: "salinity:haloalkaliphilic"
    name: "haloalkaliphilic"
    <<: *phenotypic_quality_block
  halotolerant:
    curie: "salinity:halotolerant"
    name: "halotolerant"
    <<: *phenotypic_quality_block

trophic_type:
  chemoautotroph:
    curie: "trophic_type:chemoautotrophy"
    name: "chemoautotroph"
    <<: *biological_process_block
  chemoorganotroph:
    curie: "trophic_type:chemoorganotrophy"
    name: "chemoorganotroph"
    <<: *biological_process_block
  chemoheterotroph:
    curie: "trophic_type:chemoheterotrophy"
    name: "chemoheterotroph"
    <<: *biological_process_block
  chemoorganoheterotroph:
    curie: "trophic_type:chemoorganoheterotrophy"
    name: "chemoorganoheterotroph"
    <<: *biological_process_block
  heterotroph: &heterotroph_block
    curie: "trophic_type:heterotrophy"
    name: "heterotroph"
    <<: *biological_process_block
  tt_heterotroph: *heterotroph_block
  chemoautolithotroph:
    curie: "trophic_type:chemoautolithotrophy"
    name: "chemoautolithotroph"
    <<: *biological_process_block
  methylotroph: &methylotroph_block
    curie: "trophic_type:methylotrophy"
    name: "methylotroph"
    <<: *biological_process_block
  tt_methylotroph: *methylotroph_block
  mixotroph:
    curie: "trophic_type:mixotrophy"
    name: "mixotroph"
    <<: *biological_process_block
  chemolithoautotroph:
    curie: "trophic_type:chemolithoautotrophy"
    name: "chemolithoautotroph"
    <<: *biological_process_block
  methanotroph:
    curie: "trophic_type:methanotrophy"
    name: "methanotroph"
    <<: *biological_process_block
  lithoheterotroph:
    curie: "trophic_type:lithoheterotrophy"
    name: "lithoheterotroph"
    <<: *biological_process_block
  organoheterotroph:
    curie: "trophic_type:organoheterotrophy"
    name: "organoheterotroph"
    <<: *biological_process_block
  chemolithotroph:
    curie: "trophic_type:chemolithotrophy"
    name: "chemolithotroph"
    <<: *biological_process_block
  autotroph: &autotroph_block
    curie: "trophic_type:autotrophy"
    name: "autotroph"
    <<: *biological_process_block
  tt_autotroph: *autotroph_block
  phototroph: &phototroph_block
    curie: "trophic_type:phototrophy"
    name: "phototroph"
    <<: *biological_process_block
  tt_phototroph: *phototroph_block
  photoheterotroph:
    curie: "trophic_type:photoheterotrophy"
    name: "photoheterotroph"
    <<: *biological_process_block
  lithoautotroph:
    curie: "trophic_type:lithoautotrophy"
    name: "lithoautotroph"
    <<: *biological_process_block
  diazotroph: &diazotroph_block
    curie: "trophic_type:diazotrophy"
    name: "diazotroph"
    <<: *biological_process_block
  tt_diazotroph: *diazotroph_block
  chemolithoheterotroph:
    curie: "trophic_type:chemolithoheterotrophy"
    name: "chemolithoheterotroph"
    <<: *biological_process_block
  chemotroph: &chemotroph_block
    curie: "trophic_type:chemotrophy"
    name: "chemotroph"
    <<: *biological_process_block
  tt_chemotroph: *chemotroph_block
  organotroph: &organotroph_block
    curie: "trophic_type:organotrophy"
    name: "organotroph"
    <<: *biological_process_block
  tt_organotroph: *organotroph_block
  photolithotroph:
    curie: "trophic_type:photolithotrophy"
    name: "photolithotroph"
    <<: *biological_process_block
  photoautotroph:
    curie: "trophic_type:photoautotrophy"
    name: "photoautotroph"
    <<: *biological_process_block
  photoorganoheterotroph:
    curie: "trophic_type:photoorganoheterotrophy"
    name: "photoorganoheterotroph"
    <<: *biological_process_block
  lithotroph:
    curie: "trophic_type:lithotrophy"
    name: "lithotroph"
    <<: *biological_process_block
  oligotroph: &oligotroph_block
    curie: "trophic_type:oligotrophy"
    name: "oligotroph"
    <<: *biological_process_block
  tt_oligotroph: *oligotroph_block
  litotroph: &litotroph_block
    curie: "trophic_type:litotrophy"
    name: "litotroph"
    <<: *biological_process_block
  tt_litotroph: *litotroph_block
  copiotroph: &copiotroph_block
    curie: "trophic_type:copiotrophy"
    name: "copiotroph"
    <<: *biological_process_block
  tt_copiotroph: *copiotroph_block

  copiotroph_diazotroph: &copiotroph_diazotroph_block
    curie: "trophic_type:copiotroph_diazotrophy"
    name: "copiotroph diazotroph"
    <<: *biological_process_block
    combo:
      - *copiotroph_block
      - *diazotroph_block
  tt_copiotroph_diazotroph: *copiotroph_diazotroph_block


cell_shape:
  rod_shaped: &rod_shaped_block
    curie: "cell_shape:rod"
    name: "rod shaped cell"
    <<: *phenotypic_quality_block
  s_rod: *rod_shaped_block

  sphere_shaped: &sphere_shaped_block
    curie: "cell_shape:sphere"
    name: "sphere shaped cell"
    <<: *phenotypic_quality_block
  s_sphere: *sphere_shaped_block

  coccus_shaped:
    curie: "cell_shape:coccus"
    name: "coccus shaped cell"
    <<: *phenotypic_quality_block

  spiral_shaped:
    curie: "cell_shape:spiral"
    name: "spiral shaped cell"
    <<: *phenotypic_quality_block

  ovoid_shaped: &ovoid_shaped_block
    curie: "cell_shape:ovoid"
    name: "ovoid shaped cell"
    <<: *phenotypic_quality_block
  s_ovoid: *ovoid_shaped_block

  filament_shaped: &filament_shaped_block
    curie: "cell_shape:filament"
    name: "filament shaped cell"
    <<: *phenotypic_quality_block
  s_filament: *filament_shaped_block

  oval_shaped:
    curie: "cell_shape:oval"
    name: "oval shaped cell"
    <<: *phenotypic_quality_block

  curved_shaped: &curved_shaped_block
    curie: "cell_shape:curved"
    name: "curved shaped cell"
    <<: *phenotypic_quality_block
  
  spiral_shaped: &spiral_shaped_block
    curie: "cell_shape:spiral"
    name: "spiral shaped cell"
    <<: *phenotypic_quality_block

  pleomorphic_shaped: &pleomorphic_shaped_block
    curie: "cell_shape:pleomorphic"
    name: "pleomorphic shaped cell"
    <<: *phenotypic_quality_block

  helical_shaped:
    curie: "cell_shape:helical"
    name: "helical shaped cell"
    <<: *phenotypic_quality_block

  vibrio_shaped:
    curie: "cell_shape:vibrio"
    name: "vibrio shaped cell"
    <<: *phenotypic_quality_block

  crescent_shaped:
    curie: "cell_shape:crescent"
    name: "crescent shaped cell"
    <<: *phenotypic_quality_block

  star_shaped: &star_shaped_block
    curie: "cell_shape:star"
    name: "star shaped cell"
    <<: *phenotypic_quality_block

  spore_shaped:
    curie: "cell_shape:spore"
    name: "spore shaped cell"
    <<: *phenotypic_quality_block

  diplococcus_shaped:
    curie: "cell_shape:diplococcus"
    name: "diplococcus shaped cell"
    <<: *phenotypic_quality_block

  dumbbell_shaped: &dumbbell_shaped_block
    curie: "cell_shape:dumbbell"
    name: "dumbbell shaped cell"
    <<: *phenotypic_quality_block

  ring_shaped:
    curie: "cell_shape:ring"
    name: "ring shaped cell"
    <<: *phenotypic_quality_block

  ellipsoidal:
    curie: "cell_shape:ellipsoidal"
    name: "ellipsoidal shaped cell"
    <<: *phenotypic_quality_block

  s_curved_spiral:
    curie: "cell_shape:curved_spiral"
    name: "curved spiral shaped cell"
    <<: *phenotypic_quality_block
    combo:
      - *curved_shaped_block
      - *spiral_shaped_block

  s_star_dumbbell_pleomorphic:
    curie: "cell_shape:star_dumbbell_pleomorphic"
    name: "star dumbbell pleomorphic shaped cell"
    <<: *phenotypic_quality_block
    combo:
      - *star_shaped_block
      - *dumbbell_shaped_block
      - *pleomorphic_shaped_block


gram_stain:
  gram_positive: &gram_stain_block
    curie: "gram_stain:positive"
    name: "gram positive"
    <<: *phenotypic_quality_block
  g_positive: *gram_stain_block
  gram_negative: &gram_negative_block
    curie: "gram_stain:negative"
    name: "gram negative"
    <<: *phenotypic_quality_block
  g_negative: *gram_negative_block
  gram_variable:
    curie: "gram_stain:variable"
    name: "gram variable"
    <<: *phenotypic_quality_block
  gram_indeterminate:
    curie: "gram_stain:indeterminate"
    name: "gram indeterminate"
    <<: *phenotypic_quality_block

production:
  antibiotic_compound_production:
    curie: "production:antibiotic_compound"
    name: "antibiotic compound production"
    <<: *chemical_production_block
  alcohol_production:
    curie: "production:alcohol"
    name: "alcohol production"
    <<: *chemical_production_block
  toxin_production:
    curie: "production:toxin"
    name: "toxin production"
    <<: *chemical_production_block
  amino_acid_production:
    curie: "production:amino_acid"
    name: "amino acid production"
    <<: *chemical_production_block
  lactate_production:
    curie: "production:lactate"
    name: "lactate production"
    <<: *chemical_production_block
  polysaccharide_production:
    curie: "production:polysaccharide"
    name: "polysaccharide production"
    <<: *chemical_production_block
  methane_production:
    curie: "production:methane"
    name: "methane production"
    <<: *chemical_production_block
  pigmented:
    curie: "production:pigmented"
    name: "pigmented"
    <<: *chemical_production_block

pathogen:
  human_pathogen:
    curie: "pathogen:human"
    name: "human pathogen"
    <<: *phenotypic_quality_block
  animal_pathogen:
    curie: "pathogen:animal"
    name: "animal pathogen"
    <<: *phenotypic_quality_block
  plant_pathogen:
    curie: "pathogen:plant"
    name: "plant pathogen"
    <<: *phenotypic_quality_block

motility:
  motile:
    curie: "motility:motile"
    name: "motile"
    <<: *phenotypic_capability_block
  non_motile:
    curie: "motility:non_motile"
    name: "non-motile"
    <<: *phenotypic_capability_block

sporulation:
  spore_forming: &spore_forming_block
    curie: "sporulation:spore_forming"
    name: "spore forming"
    <<: *phenotypic_capability_block
  spore: *spore_forming_block
  non_spore_forming: &non_spore_forming_block
    curie: "sporulation:non_spore_forming"
    name: "non spore forming"
    <<: *phenotypic_capability_block
  no_spore: *non_spore_forming_block

gc_content:
  gc_<=42.65:
    curie: "gc:low"
    name: "GC content <= 42.65%"
    <<: *phenotypic_quality_block
  gc_42.65_57.0:
    curie: "gc:mid1"
    name: "GC content 42.65% - 57.0%"
    <<: *phenotypic_quality_block
  gc_57.0_66.3:
    curie: "gc:mid2"
    name: "GC content 57.0% - 66.3%"
    <<: *phenotypic_quality_block
  gc_>66.3:
    curie: "gc:high"
    name: "GC content > 66.3%"
    <<: *phenotypic_quality_block

pigment:
  pigment_pink:
    curie: "pigment:pink"
    name: "pink pigment"
    <<: *chemical_production_block
  pigment_yellow:
    curie: "pigment:yellow"
    name: "yellow pigment"
    <<: *chemical_production_block
  pigment_brown:
    curie: "pigment:brown"
    name: "brown pigment"
    <<: *chemical_production_block
  pigment_red:
    curie: "pigment:red"
    name: "red pigment"
    <<: *chemical_production_block
  pigment_orange:
    curie: "pigment:orange"
    name: "orange pigment"
    <<: *chemical_production_block
  pigment_green:
    curie: "pigment:green"
    name: "green pigment"
    <<: *chemical_production_block
  pigment_black:
    curie: "pigment:black"
    name: "black pigment"
    <<: *chemical_production_block
  pigment_white:
    curie: "pigment:white"
    name: "white pigment"
    <<: *chemical_production_block
  pigment_cream:
    curie: "pigment:cream"
    name: "cream pigment"
    <<: *chemical_production_block
  pigment_carotenoid:
    curie: "pigment:carotenoid"
    name: "carotenoid pigment"
    <<: *chemical_production_block

pH_optimal:
  pho_0_to_6:
    curie: "pH_opt:low"
    name: "optimal pH 0 to 6"
    <<: *phenotypic_quality_block
  pho_6_to_7:
    curie: "pH_opt:mid1"
    name: "optimal pH 6 to 7"
    <<: *phenotypic_quality_block
  pho_7_to_8:
    curie: "pH_opt:mid2"
    name: "optimal pH 7 to 8"
    <<: *phenotypic_quality_block
  pho_8_to_14:
    curie: "pH_opt:high"
    name: "optimal pH 8 to 14"
    <<: *phenotypic_quality_block

pH_range:
  phr_0_to_4:
    curie: "pH_range:low"
    name: "pH range 0 to 4"
    <<: *phenotypic_quality_block
  phr_4_to_6:
    curie: "pH_range:mid1"
    name: "pH range 4 to 6"
    <<: *phenotypic_quality_block
  phr_6_to_7:
    curie: "pH_range:mid2"
    name: "pH range 6 to 7"
    <<: *phenotypic_quality_block
  phr_7_to_8:
    curie: "pH_range:mid3"
    name: "pH range 7 to 8"
    <<: *phenotypic_quality_block
  phr_8_to_10:
    curie: "pH_range:mid4"
    name: "pH range 8 to 10"
    <<: *phenotypic_quality_block
  phr_10_to_14:
    curie: "pH_range:high"
    name: "pH range 10 to 14"
    <<: *phenotypic_quality_block

pH_delta:
  phd_<=1:
    curie: "pH_delta:very_low"
    name: "pH delta <= 1"
    <<: *phenotypic_quality_block
  phd_1_2:
    curie: "pH_delta:low"
    name: "pH delta 1 to 2"
    <<: *phenotypic_quality_block
  phd_2_3:
    curie: "pH_delta:mid1"
    name: "pH delta 2 to 3"
    <<: *phenotypic_quality_block
  phd_3_4:
    curie: "pH_delta:mid2"
    name: "pH delta 3 to 4"
    <<: *phenotypic_quality_block
  phd_4_5:
    curie: "pH_delta:mid3"
    name: "pH delta 4 to 5"
    <<: *phenotypic_quality_block
  phd_5_9:
    curie: "pH_delta:high"
    name: "pH delta 5 to 9"
    <<: *phenotypic_quality_block
  
NaCl_optimal:
  nao_<=1:
    curie: "NaCl_opt:very_low"
    name: "optimal NaCl <= 1%"
    <<: *phenotypic_quality_block
  nao_1_to_3:
    curie: "NaCl_opt:low"
    name: "optimal NaCl 1% to 3%"
    <<: *phenotypic_quality_block
  nao_3_to_8:
    curie: "NaCl_opt:mid"
    name: "optimal NaCl 3% to 8%"
    <<: *phenotypic_quality_block
  nao_>8:
    curie: "NaCl_opt:high"
    name: "optimal NaCl > 8%"
    <<: *phenotypic_quality_block

NaCl_range:
  nar_<=1:
    curie: "NaCl_range:very_low"
    name: "NaCl range <= 1%"
    <<: *phenotypic_quality_block
  nar_1_to_3:
    curie: "NaCl_range:low"
    name: "NaCl range 1% to 3%"
    <<: *phenotypic_quality_block
  nar_3_to_8:
    curie: "NaCl_range:mid"
    name: "NaCl range 3% to 8%"
    <<: *phenotypic_quality_block
  nar_>8:
    curie: "NaCl_range:high"
    name: "NaCl range > 8%"
    <<: *phenotypic_quality_block

NaCl_delta:
  nad_<=1:
    curie: "NaCl_delta:very_low"
    name: "NaCl delta <= 1%"
    <<: *phenotypic_quality_block
  nad_1_3:
    curie: "NaCl_delta:low"
    name: "NaCl delta 1% to 3%"
    <<: *phenotypic_quality_block
  nad_3_8:
    curie: "NaCl_delta:mid"
    name: "NaCl delta 3% to 8%"
    <<: *phenotypic_quality_block
  nad_>8:
    curie: "NaCl_delta:high"
    name: "NaCl delta > 8%"
    <<: *phenotypic_quality_block
  
temperature_optimal:
  to_<=10:
    curie: "temp_opt:very_low"
    name: "optimal temperature <= 10 deg C"
    <<: *phenotypic_quality_block
  to_10_to_22:
    curie: "temp_opt:low"
    name: "optimal temperature 10 deg C to 22 deg C"
    <<: *phenotypic_quality_block
  to_22_to_27:
    curie: "temp_opt:mid1"
    name: "optimal temperature 22 deg C to 27 deg C"
    <<: *phenotypic_quality_block
  to_27_to_30:
    curie: "temp_opt:mid2"
    name: "optimal temperature 27 deg C to 30 deg C"
    <<: *phenotypic_quality_block
  to_30_to_34:
    curie: "temp_opt:mid3"
    name: "optimal temperature 30 deg C to 34 deg C"
    <<: *phenotypic_quality_block
  to_34_to_40:
    curie: "temp_opt:mid4"
    name: "optimal temperature 34 deg C to 40 deg C"
    <<: *phenotypic_quality_block
  to_>40:
    curie: "temp_opt:high"
    name: "optimal temperature > 40 deg C"
    <<: *phenotypic_quality_block

temperature_range:
  tr_<=10:
    curie: "temp_range:very_low"
    name: "temperature range <= 10 deg C"
    <<: *phenotypic_quality_block
  tr_10_to_22:
    curie: "temp_range:low"
    name: "temperature range 10 deg C to 22 deg C"
    <<: *phenotypic_quality_block
  tr_22_to_27:
    curie: "temp_range:mid1"
    name: "temperature range 22 deg C to 27 deg C"
    <<: *phenotypic_quality_block
  tr_27_to_30:
    curie: "temp_range:mid2"
    name: "temperature range 27 deg C to 30 deg C"
    <<: *phenotypic_quality_block
  tr_30_to_34:
    curie: "temp_range:mid3"
    name: "temperature range 30 deg C to 34 deg C"
    <<: *phenotypic_quality_block
  tr_34_to_40:
    curie: "temp_range:mid4"
    name: "temperature range 34 deg C to 40 deg C"
    <<: *phenotypic_quality_block
  tr_>40:
    curie: "temp_range:high"
    name: "temperature range > 40 deg C"
    <<: *phenotypic_quality_block

temperature_delta:
  td_<=1:
    curie: "temp_delta:very_low"
    name: "temperature delta <= 1 deg C"
    <<: *phenotypic_quality_block
  td_1_5:
    curie: "temp_delta:low"
    name: "temperature delta 1 deg C to 5 deg C"
    <<: *phenotypic_quality_block
  td_5_10:
    curie: "temp_delta:mid1"
    name: "temperature delta 5 deg C to 10 deg C"
    <<: *phenotypic_quality_block
  td_10_20:
    curie: "temp_delta:mid2"
    name: "temperature delta 10 deg C to 20 deg C"
    <<: *phenotypic_quality_block
  td_20_30:
    curie: "temp_delta:mid3"
    name: "temperature delta 20 deg C to 30 deg C"
    <<: *phenotypic_quality_block
  td_>30:
    curie: "temp_delta:high"
    name: "temperature delta > 30 deg C"
    <<: *phenotypic_quality_block

cell_width:
  w_<=0.5:
    curie: "cell_width:very_low"
    name: "cell width <= 0.5um"
    <<: *phenotypic_quality_block
  w_0.5_0.65:
    curie: "cell_width:low"
    name: "cell width 0.5um to 0.65um"
    <<: *phenotypic_quality_block
  w_0.65_0.9:
    curie: "cell_width:mid"
    name: "cell width 0.65um to 0.9um"
    <<: *phenotypic_quality_block
  w_>0.9:
    curie: "cell_width:high"
    name: "cell width > 0.9um"
    <<: *phenotypic_quality_block

cell_length:
  l_<=1.3:
    curie: "cell_length:very_low"
    name: "cell length <= 1.3um"
    <<: *phenotypic_quality_block
  l_1.3_2:
    curie: "cell_length:low"
    name: "cell length 1.3um to 2um"
    <<: *phenotypic_quality_block
  l_2_3:
    curie: "cell_length:mid"
    name: "cell length 2um to 3um"
    <<: *phenotypic_quality_block
  l_>3:
    curie: "cell_length:high"
    name: "cell length > 3um"
    <<: *phenotypic_quality_block

other:
  antibiotic_resistance:
    curie: "pathways:antibiotic_resistance"
    name: "antibiotic resistance"
    <<: *phenotypic_capability_block