ENH: Bump ITK and change http to https

KitwareMedical · Jun 2, 2022 · 69cca73 · 69cca73
1 parent 95698c3
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diff --git a/.clang-format b/.clang-format
@@ -4,7 +4,7 @@
 ## See: https://clang.llvm.org/docs/ClangFormatStyleOptions.html for details of each option
 ##
 ## The clang-format binaries can be downloaded as part of the clang binary distributions
-## from http://releases.llvm.org/download.html
+## from https://releases.llvm.org/download.html
 ##
 ## Use the script Utilities/Maintenance/clang-format.bash to faciliate
 ## maintaining a consistent code style.

diff --git a/.github/workflows/build-test-package.yml b/.github/workflows/build-test-package.yml
@@ -3,7 +3,7 @@ name: Build, test, package
 on: [push,pull_request]
 
 env:
-  itk-git-tag: "801370c025c7d296783481779a41c6d559c992c5"
+  itk-git-tag: "d6acfd26bfcdec606d605beb1301bddfb17c05a6"
   itk-wheel-tag: "v5.3rc04"
 
 jobs:

diff --git a/LICENSE b/LICENSE
@@ -1,7 +1,7 @@
 
                                  Apache License
                            Version 2.0, January 2004
-                        http://www.apache.org/licenses/
+                        https://www.apache.org/licenses/
 
    TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
 
@@ -193,7 +193,7 @@
    you may not use this file except in compliance with the License.
    You may obtain a copy of the License at
 
-       http://www.apache.org/licenses/LICENSE-2.0
+       https://www.apache.org/licenses/LICENSE-2.0
 
    Unless required by applicable law or agreed to in writing, software
    distributed under the License is distributed on an "AS IS" BASIS,

diff --git a/README.rst b/README.rst
@@ -17,13 +17,13 @@ Overview
 This repository contains `ITK <https://itk.org>`_ filters to estimate a
 strain tensor field from a displacement field or a spatial transformation.
 
-For more information, see the `Insight Journal article <http://hdl.handle.net/10380/3573>`_::
+For more information, see the `Insight Journal article <https://hdl.handle.net/10380/3573>`_::
 
   McCormick M.
   N-Dimensional Computation of Strain Tensor Images in the Insight Toolkit
   The Insight Journal. January-December. 2017.
-  http://hdl.handle.net/10380/3573
-  http://insight-journal.org/browse/publication/984
+  https://hdl.handle.net/10380/3573
+  https://insight-journal.org/browse/publication/984
 
 
 Installation

diff --git a/doc/ITKStrain.tex b/doc/ITKStrain.tex
@@ -4,7 +4,7 @@
 % of the standard documentation for Insight.  It may be found online
 % at:
 %
-%     http://www.itk.org/
+%     https://www.itk.org/
 
 \documentclass{InsightArticle}
 

diff --git a/doc/InsightArticle.cls b/doc/InsightArticle.cls
@@ -76,11 +76,11 @@
 
 % Define command to make reference to on-line Doxygen documentation
 \newcommand{\doxygen}[1]{
-\href{http://www.itk.org/Doxygen/html/classitk_1_1#1.html}{\code{itk::#1}}}  
+\href{https://www.itk.org/Doxygen/html/classitk_1_1#1.html}{\code{itk::#1}}}  
 
 % Define command to make reference to on-line Doxygen documentation
 \newcommand{\subdoxygen}[2]{
-\href{http://www.itk.org/Doxygen/html/classitk_1_1#1_1_1#2.html}{\code{itk::#1::#2}}}  
+\href{https://www.itk.org/Doxygen/html/classitk_1_1#1_1_1#2.html}{\code{itk::#1::#2}}}  
 
 % Define command for the standard comment introducing classes with similar functionalities
 \newcommand{\relatedClasses}{

diff --git a/doc/InsightJournal.bib b/doc/InsightJournal.bib
@@ -43,7 +43,7 @@ @misc{WikipediaStrainTheory
 
 @Manual{POVRay,
   Title          = "Persistence of Vision, Ray-Tracer",
-  Address        = "http://www.povray.org",
+  Address        = "https://www.povray.org",
 }
 
 @Book{Romeny1994,
@@ -63,7 +63,7 @@ @Book{ToErrIsHuman2001
 @TechReport{Aisemberg,
   Author         = "G.O. Aisemberg",
   Title          = "Vertebrate embryology",
-  Address        = "http://lcw.lehman.edu/lehman/depts/biology/aisemberg/Bio268.html",
+  Address        = "https://lcw.lehman.edu/lehman/depts/biology/aisemberg/Bio268.html",
   Institution    = "Department of Biological Sciences. Lehman College,
                    City University of New York",
   year           = 1998,
@@ -766,7 +766,7 @@ @TechReport{Culver1999
   Title          = "Intrinsic scale for boundary representation of
                    two-dimensional objects",
   Institution    = "MIDAG, University of North Carolina at Chapel Hill",
-  annote         = "http://www.cs.unc.edu/~culver",
+  annote         = "https://www.cs.unc.edu/~culver",
   year           = 1999,
 }
 
@@ -840,7 +840,7 @@ @TechReport{Deriche1993
 @Book{Darwin1999,
   Author         = "C. Darwin",
   Title          = "On the Origin of Species",
-  Publisher      = "http://www.gutenberg.org",
+  Publisher      = "https://www.gutenberg.org",
   Edition        = "sixth",
   year           = 1999,
 }
@@ -1804,8 +1804,8 @@ @Manual{ITKSoftwareGuide
   Title          = {The {ITK} {S}oftware {G}uide},
   Author         = {Ibanez, L. and Schroeder, W. and Ng, L. and Cates, J.},
   Organization   = "Kitware, Inc. ISBN 1-930934-10-6",
-  Address        = {http://www.itk.org/ItkSoftwareGuide.pdf},
-  url            = {http://www.itk.org/ItkSoftwareGuide.pdf},
+  Address        = {https://www.itk.org/ItkSoftwareGuide.pdf},
+  url            = {https://www.itk.org/ItkSoftwareGuide.pdf},
   Publisher      = {Kitware Inc.},
   Edition        = {First},
   year           = 2003,
@@ -1815,8 +1815,8 @@ @Manual{ITKSoftwareGuideSecondEdition
   Title          = {The {ITK} {S}oftware {G}uide},
   Author         = {Ibanez, L. and Schroeder, W. and Ng, L. and Cates, J.},
   Organization   = "Kitware, Inc. ISBN 1-930934-15-7",
-  Address        = {http://www.itk.org/ItkSoftwareGuide.pdf},
-  url            = {http://www.itk.org/ItkSoftwareGuide.pdf},
+  Address        = {https://www.itk.org/ItkSoftwareGuide.pdf},
+  url            = {https://www.itk.org/ItkSoftwareGuide.pdf},
   Publisher      = {Kitware Inc.},
   Edition        = {Second},
   year           = 2005,
@@ -3477,7 +3477,7 @@ @Manual{OpenGLSpecification
   Title          = "The OpenGL Graphics System: A Specification (Version
                    1.2)",
   Author         = "M. Segal and K. Akeley",
-  Address        = "http://www.opengl.org",
+  Address        = "https://www.opengl.org",
   month          = "march",
   year           = 1998,
 }
@@ -3895,7 +3895,7 @@ @TechReport{Udupa1998
   Author         = "J. K. Udupa and S. Samarasekera",
   Title          = "Extraction of fuzzy object information in multidimensional images for quantifying MS lesions of the brain",
   year           = 1998,
-  Institution    = "United States Patent Office http://www.uspto.gov",
+  Institution    = "United States Patent Office https://www.uspto.gov",
   Number         = "5,812,691"
 }
 
@@ -4790,7 +4790,7 @@ @Manual{CreatisINSA-Lyon
   Title          = "The GDCM Library",
   Institution    = "CREATIS (France)",
   Organization   = "CNRS, INSERM, INSA Lyon, UCB Lyon",
-  Address        = "http://www.creatis.insa-lyon.fr/Public/Gdcm/"
+  Address        = "https://www.creatis.insa-lyon.fr/Public/Gdcm/"
 }
 
 @InProceedings{Chung2002,
@@ -4813,7 +4813,7 @@ @TechReport{DICOMStandard
   Author         = "NEMA",
   Title          = "The DICOM Standard",
   Institution    = "NEMA",
-  Address        = "\url{http://dicom.nema.org/}",
+  Address        = "\url{https://dicom.nema.org/}",
   Publisher      = "National Electical Manufacturers Association",
   Year           = 2014
 }
@@ -4841,7 +4841,7 @@ @Manual{OpenJPEG
   Title          = "OpenJPEG",
   Institution    = "Communications and Remote Sensing Laboratory (TELE)",
   Organization   = "Universit\'{e} Catholique de Louvain (UCL), Belgium",
-  Address        = "http://www.openjpeg.org"
+  Address        = "https://www.openjpeg.org"
 }
 
 @TechReport{JPEG2000KeyAdvantages,
@@ -4850,7 +4850,7 @@ @TechReport{JPEG2000KeyAdvantages
   Institution    = "Aware Inc.",
   Year           = 2002,
   Month          = "February",
-  Address        = "http://medical.nema.org/Dicom/minutes/WG-04/2002/2002-02-27/Weisfeiler.doc"
+  Address        = "https://medical.nema.org/Dicom/minutes/WG-04/2002/2002-02-27/Weisfeiler.doc"
 }
 
 @inproceedings{ marcellin00overview,

diff --git a/doc/InsightJournal.sty b/doc/InsightJournal.sty
@@ -1108,11 +1108,11 @@
 %  Commands for adding the link reference to the URL in the Insight Journal
 %
 \newcommand{\urlhandle}[1]{
-\url{http://hdl.handle.net/10380/#1}}  
+\url{https://hdl.handle.net/10380/#1}}  
 
 \newcommand{\IJhandle}[1]{
-Latest version available at the \href{http://www.insight-journal.org}{Insight Journal} [\urlhandle{#1}]\\
-Distributed under \href{http://creativecommons.org/licenses/by/3.0/us/}{Creative Commons Attribution License}}
+Latest version available at the \href{https://www.insight-journal.org}{Insight Journal} [\urlhandle{#1}]\\
+Distributed under \href{https://creativecommons.org/licenses/by/3.0/us/}{Creative Commons Attribution License}}
 
 \newcommand{\IJhandlefooter}[1]{
 \fancyfoot[CO,CE]{

diff --git a/include/itkSplitComponentsImageFilter.h b/include/itkSplitComponentsImageFilter.h
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,

diff --git a/include/itkSplitComponentsImageFilter.hxx b/include/itkSplitComponentsImageFilter.hxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,

diff --git a/include/itkStrainImageFilter.h b/include/itkStrainImageFilter.h
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,

diff --git a/include/itkStrainImageFilter.hxx b/include/itkStrainImageFilter.hxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,

diff --git a/include/itkTransformToStrainFilter.h b/include/itkTransformToStrainFilter.h
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,

diff --git a/include/itkTransformToStrainFilter.hxx b/include/itkTransformToStrainFilter.hxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,

diff --git a/setup.py b/setup.py
@@ -29,7 +29,7 @@
                      'Eulerian-Almansi strain can be generated.\n'
                      'Please refer to:\n'
                      'M. McCormick, "N-Dimensional Computation of Strain Tensor Images in the Insight Toolkit.", '
-                     'Insight Journal, January-December 2017, http://hdl.handle.net/10380/3573',
+                     'Insight Journal, January-December 2017, https://hdl.handle.net/10380/3573',
     classifiers=[
         "License :: OSI Approved :: Apache Software License",
         "Programming Language :: Python",

diff --git a/test/ReadInDisplacements.h b/test/ReadInDisplacements.h
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,

diff --git a/test/WriteOutStrains.h b/test/WriteOutStrains.h
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,

diff --git a/test/itkStrainImageFilterDoGTest.cxx b/test/itkStrainImageFilterDoGTest.cxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,

diff --git a/test/itkStrainImageFilterRecursiveGaussianTest.cxx b/test/itkStrainImageFilterRecursiveGaussianTest.cxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,

diff --git a/test/itkStrainImageFilterTest.cxx b/test/itkStrainImageFilterTest.cxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,

diff --git a/test/itkTransformToStrainFilterTest.cxx b/test/itkTransformToStrainFilterTest.cxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,