smudgeplot hetkmers

usage: smudgeplot hetkmers [-h] [-o O] [-k K] [-t T] [--all] [infile]

Calculate unique kmer pairs from a Jellyfish or KMC dump file.

positional arguments:
  infile      Alphabetically sorted Jellyfish or KMC dump file (stdin).

optional arguments:
  -h, --help  show this help message and exit
  -o O        The pattern used to name the output (kmerpairs).
  -k K        The length of the kmer.
  -t T        Number of processes to use.
  --all       Get all kmer pairs one SNP away from each other (default: just
              the middle one).