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Histogram was gone #177

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xiekunwhy opened this issue Nov 28, 2024 · 4 comments
Open

Histogram was gone #177

xiekunwhy opened this issue Nov 28, 2024 · 4 comments
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0.4.0 Arched For things related to sploidyplot branch enhancement New feature or request smudgeplot included if smudgeplot was posted with the quesiton / problem

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@xiekunwhy
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Hi,

Following this totural (https://github.com/KamilSJaron/smudgeplot/wiki/BGA24), I can't see this plot
image

But only a plot without histogram.

Best,
Kun

@KamilSJaron
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I should update the plot in the tutorial!!!

Can you please past your plot without histograms here? We removed the histograms in the latest version because no one seems to be using them... A few people asked to add them back. We will, but there are some other priorities first :-)

@xiekunwhy
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Hi, here is mine, can you explain Y-axis in the new plot ?

image

@xiekunwhy
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I also hoping histogram back.

@KamilSJaron
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KamilSJaron commented Dec 2, 2024

The y-axis is the same as it used to, but instead of giving you the coverage of the A + B in "1n coverage" units, it gives you the numerical scale. The 2n, ... etc you can tell by labels of smudges.

However, in your case the labels are terribly misplaced, would you mind sharing your smu file? I would like to see how that happened.

@KamilSJaron KamilSJaron added enhancement New feature or request smudgeplot included if smudgeplot was posted with the quesiton / problem 0.4.0 Arched For things related to sploidyplot branch labels Dec 2, 2024
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Labels
0.4.0 Arched For things related to sploidyplot branch enhancement New feature or request smudgeplot included if smudgeplot was posted with the quesiton / problem
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