Dockerfile-tda

FROM ubuntu:16.04

RUN apt-get update -y && apt-get upgrade -y
RUN apt-get install -y \
    curl \
    make \
    cmake \
    g++ \
    graphviz \
    doxygen \
    perl \
    libboost-all-dev \
    libeigen3-dev \
    libgmp3-dev \
    libmpfr-dev \
    libtbb-dev \
    locales \
    libfreetype6-dev \
    pkg-config \
    software-properties-common

# Install python3.6
RUN add-apt-repository ppa:jonathonf/python-3.6
RUN apt-get update
RUN apt-get install -y \
    python3.6 \
    python3.6-dev \
    python3-pip \
    python3-pytest \
    python3-tk


RUN python3.6 -m pip install pip --upgrade
RUN python3.6 -m pip install \
    numpy \
    scikit-learn \
    cython \
    sphinx \
    sphinxcontrib-bibtex \
    matplotlib

# Install sklearn_tda
RUN apt-get install -y \
    git-core

RUN git clone https://github.com/MathieuCarriere/sklearn_tda
WORKDIR sklearn_tda

# These changes maybe should be submitted to sklearn_tda
RUN sed -i "s|from vectors import|from .vectors import|g" sklearn_tda/code.py
RUN sed -i "s|from kernels import|from .kernels import|g" sklearn_tda/code.py
RUN sed -i "s|from hera_wasserstein import|from .hera_wasserstein import|g" sklearn_tda/code.py
RUN sed -i "s|from hera_bottleneck import|from .hera_bottleneck import|g" sklearn_tda/code.py

RUN python3.6 -m pip install .


# Install GCAL
WORKDIR /gcal
RUN curl -LO "https://github.com/CGAL/cgal/releases/download/releases%2FCGAL-4.12/CGAL-4.12.tar.xz" \
    && tar xf CGAL-4.12.tar.xz && cd CGAL-4.12 \
    && cmake -DCGAL_HEADER_ONLY=ON -DCMAKE_BUILD_TYPE=Release . && make all install

# Install Gudhi
WORKDIR /gudhi

RUN curl -LO "https://gforge.inria.fr/frs/download.php/file/37579/2018-06-14-13-32-49_GUDHI_2.2.0.tar.gz" \
    && tar xf 2018-06-14-13-32-49_GUDHI_2.2.0.tar.gz && cd 2018-06-14-13-32-49_GUDHI_2.2.0 \
    && mkdir build && cd build && cmake -DPython_ADDITIONAL_VERSIONS=3 -DPYTHON_EXECUTABLE=/usr/bin/python3.6 ..

WORKDIR 2018-06-14-13-32-49_GUDHI_2.2.0/build

ENV GUDHIPATH /gudhi/2018-06-14-13-32-49_GUDHI_2.2.0/build/cython
ENV PYTHONPATH $GUDHIPATH:$PYTHONPATH

RUN make all test install

WORKDIR /openpose-action-recognition

COPY requirements.txt requirements.txt
RUN python3.6 -m pip install -r requirements.txt