-
Notifications
You must be signed in to change notification settings - Fork 41
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Re Dev : To Do #20
Comments
cloned into |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000001405.22_GRCh38.p7/README.txt ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000001405.22_GRCh38.p7/GCA_000001405.22_GRCh38.p7_genomic.fna.gz |
the readme ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/GRCh38_reference_genome/README.20150309.GRCh38_full_analysis_set_plus_decoy_hla |
SJN dev in |
git lfs : https://git-lfs.github.com/ |
cp -v GRCh38_full_analysis_set_plus_decoy_hla.fa GRCh38dH.fasta
'GRCh38_full_analysis_set_plus_decoy_hla.fa' -> 'GRCh38dH.fasta' |
New Branch in GIT repn
f1000_dev
on image
/home/ubuntu/scratch/ngseasy
Openstack VM
Images
Get Genomes
Get test data
Index Genomes
bwa
PLAN BY MONDAY 23rd
giab_data_indexes
https://github.com/genome-in-a-bottle/giab_data_indexes
Test Data
GATK Gold Standard Run
This is the "Gold Standard". This will a week if no bugs.
The Glue
Open :-
RECON BY MONDAY NEXT WEEK
The text was updated successfully, but these errors were encountered: