From a328c20b5cabc2c375749040e7750dd8b82ae88e Mon Sep 17 00:00:00 2001 From: antagomir Date: Thu, 4 Jan 2024 14:16:39 +0200 Subject: [PATCH] FindingPheno release --- README.md | 47 +++++++++++++++++++++++++++++++++++++---------- 1 file changed, 37 insertions(+), 10 deletions(-) diff --git a/README.md b/README.md index 35972e7..caed1d2 100644 --- a/README.md +++ b/README.md @@ -9,17 +9,14 @@ This is a **Julia** package for fractional differential equations and ODEs. It p Related work includes the independent [FractionalDiffEq](https://github.com/SciFracX/FractionalDiffEq.jl) Julia Package that provides solutions of differential equations with different fractional operators, and earlier tools that are available in [Matlab](https://www.dm.uniba.it/members/garrappa/software). -## Publications - -The package development is linked with the following publications/preprints: - -- Fdesolver: A Julia package for solving fractional differential equations M Khalighi, G Benedetti, L Lahti arXiv preprint, 2022. [arXiv:2212.12550](https://arxiv.org/abs/2212.12550) - -- Ebola epidemic model with dynamic population and memory, F Ndaïrou, M Khalighi, and L Lahti, Chaos, Solitons \& Fractals, 170: 113361, 2023. [doi:10.1016/j.chaos.2023.113361](https://doi.org/10.1016/j.chaos.2023.113361) - -- Three-species Lotka-Volterra model with respect to Caputo and Caputo-Fabrizio fractional operators. M Khalighi, L Eftekhari, S Hosseinpour, L Lahti. Symmetry 13 (3):368, 2021. [doi:10.3390/sym13030368](https://doi.org/10.3390/sym13030368) +The implemented models are generic and broadly applicable to modeling +multivariate signals from a single source or collected across multiple +sources. The dynamical models implemented in this package were +initially developed for modeling dynamics of interacting microbial +communities (Khalighi et al. 2022) but the models are more broadly +applicable and applicable to studying multi-omic and host-microbiome +interactions. -- Quantifying the impact of ecological memory on the dynamics of interacting communities. M Khalighi, G Sommeria-Klein, D Gonze, K Faust, L Lahti. bioRxiv 2021.09.01.458486 [doi:10.1101/2021.09.01.458486](https://doi.org/10.1101/2021.09.01.458486) ## Method @@ -49,3 +46,33 @@ import Pkg; Pkg.add("FdeSolver") ``` A few methods on its usage are explained in [Examples](https://juliaturkudatascience.github.io/FdeSolver.jl/stable/examples/). + + +## Acknowledgments + +We are grateful to all [contributors](https://github.com/JuliaTurkuDataScience/FdeSolver.jl/graphs/contributors). New issues and pull requests are welcome. + +This research has received funding from + * the Horizon 2020 Programme of the European Union within the [FindingPheno project](https://www.findingpheno.eu/) under grant agreement No 952914. + * Research Council of Finland (grant 330887) + +## Publications + +**Kindly cite this work** as follows: + +- Fdesolver: A Julia package for solving fractional differential equations M Khalighi, G Benedetti, L Lahti arXiv preprint, 2022. [arXiv:2212.12550](https://arxiv.org/abs/2212.12550) + + +The package development is further linked with the following publications/preprints: + +- Quantifying the impact of ecological memory on the dynamics of interacting communities. M Khalighi, G Sommeria-Klein, D Gonze, K Faust, L Lahti. PLoS Computational Biology 18(6), 2022 [doi:10.1371/journal.pcbi.1009396](https://doi.org/10.1371/journal.pcbi.1009396) + +- Three-species Lotka-Volterra model with respect to Caputo and Caputo-Fabrizio fractional operators. M Khalighi, L Eftekhari, S Hosseinpour, L Lahti. Symmetry 13 (3):368, 2021. [doi:10.3390/sym13030368](https://doi.org/10.3390/sym13030368) + +- Ebola epidemic model with dynamic population and memory, F Ndaïrou, M Khalighi, and L Lahti, Chaos, Solitons \& Fractals, 170: 113361, 2023. [doi:10.1016/j.chaos.2023.113361](https://doi.org/10.1016/j.chaos.2023.113361) + + + + + +