diff --git a/Project.toml b/Project.toml
index c1a4e2ae..053e7c76 100644
--- a/Project.toml
+++ b/Project.toml
@@ -23,12 +23,14 @@ cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd"
[compat]
Compat = "4.7.0"
ComputationalResources = "0.3.2"
+cuDNN = "1"
Flux = "0.12, 0.13, 0.14"
MLJFlux = "0.2.10, 0.3, 0.4"
MLJModelInterface = "1.8.0"
MLUtils = "0.4.3"
Parameters = "0.12"
ProgressMeter = "1.7.2"
+Statistics = "1"
Tables = "1.10.1"
Tullio = "0.3.5"
Zygote = "0.6"
diff --git a/README.md b/README.md
index e087cbd8..c8df3ede 100644
--- a/README.md
+++ b/README.md
@@ -2,7 +2,7 @@
-[](https://juliatrustworthyai.github.io/LaplaceRedux.jl/stable) [](https://juliatrustworthyai.github.io/LaplaceRedux.jl/dev) [](https://github.com/JuliaTrustworthyAI/LaplaceRedux.jl/actions/workflows/CI.yml?query=branch%3Amain) [](https://codecov.io/gh/JuliaTrustworthyAI/LaplaceRedux.jl) [](https://github.com/invenia/BlueStyle) [](https://github.com/SciML/ColPrac) [](https://twitter.com/paltmey)
+[](https://juliatrustworthyai.github.io/LaplaceRedux.jl/stable) [](https://juliatrustworthyai.github.io/LaplaceRedux.jl/dev) [](https://github.com/juliatrustworthyai/LaplaceRedux.jl/actions/workflows/CI.yml?query=branch%3Amain) [](https://codecov.io/gh/juliatrustworthyai/LaplaceRedux.jl) [](https://github.com/invenia/BlueStyle) [](LICENSE) [](https://pkgs.genieframework.com?packages=LaplaceRedux)
`LaplaceRedux.jl` is a library written in pure Julia that can be used for effortless Bayesian Deep Learning through Laplace Approximation (LA). In the development of this package I have drawn inspiration from this Python [library](https://aleximmer.github.io/Laplace/index.html#setup) and its companion [paper](https://arxiv.org/abs/2106.14806) (Daxberger et al. 2021).
@@ -22,13 +22,17 @@ using Pkg
Pkg.add("https://github.com/JuliaTrustworthyAI/LaplaceRedux.jl")
```
+## 🏃 Getting Started
+
+If you are new to Deep Learning in Julia or simply prefer learning through videos, check out this awesome YouTube [tutorial](https://www.youtube.com/channel/UCQwQVlIkbalDzmMnr-0tRhw) by [doggo.jl](https://www.youtube.com/@doggodotjl/about) 🐶. Additionally, you can also find a [video](https://www.youtube.com/watch?v=oWko8FRj_64) of my presentation at JuliaCon 2022 on YouTube.
+
## 🖥️ Basic Usage
`LaplaceRedux.jl` can be used for any neural network trained in [`Flux.jl`](https://fluxml.ai/Flux.jl/dev/). Below we show basic usage examples involving two simple models for a regression and a classification task, respectively.
### Regression
-A complete worked example for a regression model can be found in the [docs](https://www.paltmeyer.com/LaplaceRedux.jl/dev/tutorials/regression/). Here we jump straight to Laplace Approximation and take the pre-trained model `nn` as given. Then LA can be implemented as follows, where we specify the model `likelihood`. The plot show the fitted values overlaid with a 95% confidence interval. As expected, predictive uncertainty quickly increases in areas that are not populated by any training data.
+A complete worked example for a regression model can be found in the [docs](https://www.paltmeyer.com/LaplaceRedux.jl/dev/tutorials/regression/). Here we jump straight to Laplace Approximation and take the pre-trained model `nn` as given. Then LA can be implemented as follows, where we specify the model `likelihood`. The plot shows the fitted values overlaid with a 95% confidence interval. As expected, predictive uncertainty quickly increases in areas that are not populated by any training data.
``` julia
la = Laplace(nn; likelihood=:regression)
@@ -44,12 +48,10 @@ plot(la, X, y; zoom=-5, size=(500,500))
Once again we jump straight to LA and refer to the [docs](https://www.paltmeyer.com/LaplaceRedux.jl/dev/tutorials/mlp/) for a complete worked example involving binary classification. In this case we need to specify `likelihood=:classification`. The plot below shows the resulting posterior predictive distributions as contours in the two-dimensional feature space: note how the **Plugin** Approximation on the left compares to the Laplace Approximation on the right.
``` julia
-theme(:lime)
-
la = Laplace(nn; likelihood=:classification)
fit!(la, data)
la_untuned = deepcopy(la) # saving for plotting
-optimize_prior!(la; n_steps=500)
+optimize_prior!(la; n_steps=100)
# Plot the posterior predictive distribution:
zoom=0
diff --git a/README.qmd b/README.qmd
index 5ab51976..5b6bb5b8 100644
--- a/README.qmd
+++ b/README.qmd
@@ -17,12 +17,6 @@ jupyter: julia-1.9
-[](https://juliatrustworthyai.github.io/LaplaceRedux.jl/stable)
-[](https://juliatrustworthyai.github.io/LaplaceRedux.jl/dev)
-[](https://github.com/JuliaTrustworthyAI/LaplaceRedux.jl/actions/workflows/CI.yml?query=branch%3Amain)
-[](https://codecov.io/gh/JuliaTrustworthyAI/LaplaceRedux.jl)
-[](https://github.com/invenia/BlueStyle)
-[](https://github.com/SciML/ColPrac)
-[](https://twitter.com/paltmey)
+[](https://juliatrustworthyai.github.io/LaplaceRedux.jl/stable) [](https://juliatrustworthyai.github.io/LaplaceRedux.jl/dev) [](https://github.com/juliatrustworthyai/LaplaceRedux.jl/actions/workflows/CI.yml?query=branch%3Amain) [](https://codecov.io/gh/juliatrustworthyai/LaplaceRedux.jl) [](https://github.com/invenia/BlueStyle) [](LICENSE) [](https://pkgs.genieframework.com?packages=LaplaceRedux)
{{< include docs/src/_intro.qmd >}}
\ No newline at end of file
diff --git a/README_files/figure-commonmark/cell-4-output-1.svg b/README_files/figure-commonmark/cell-4-output-1.svg
index 21625759..0f7c9a3c 100644
--- a/README_files/figure-commonmark/cell-4-output-1.svg
+++ b/README_files/figure-commonmark/cell-4-output-1.svg
@@ -1,202 +1,202 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
diff --git a/README_files/figure-commonmark/cell-7-output-1.svg b/README_files/figure-commonmark/cell-7-output-1.svg
index ae5ead80..f3e90baf 100644
--- a/README_files/figure-commonmark/cell-7-output-1.svg
+++ b/README_files/figure-commonmark/cell-7-output-1.svg
@@ -1,884 +1,893 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
diff --git a/dev/www/intro.gif b/dev/www/intro.gif
index 02921d21..fb8bf3e6 100644
Binary files a/dev/www/intro.gif and b/dev/www/intro.gif differ
diff --git a/docs/Manifest.toml b/docs/Manifest.toml
index c4406a87..6bc5a49e 100644
--- a/docs/Manifest.toml
+++ b/docs/Manifest.toml
@@ -1,8 +1,8 @@
# This file is machine-generated - editing it directly is not advised
-julia_version = "1.9.1"
+julia_version = "1.9.3"
manifest_format = "2.0"
-project_hash = "2fa04eb83f4fbb8ed553d6f99b10ceb64603ba17"
+project_hash = "effe7fde1f570fadf73ac1e1d36d23d2bfafa7a9"
[[deps.ANSIColoredPrinters]]
git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c"
@@ -17,19 +17,25 @@ version = "1.4.1"
[[deps.AbstractFFTs]]
deps = ["LinearAlgebra"]
-git-tree-sha1 = "cad4c758c0038eea30394b1b671526921ca85b21"
+git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef"
uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c"
-version = "1.4.0"
-weakdeps = ["ChainRulesCore"]
+version = "1.5.0"
+weakdeps = ["ChainRulesCore", "Test"]
[deps.AbstractFFTs.extensions]
AbstractFFTsChainRulesCoreExt = "ChainRulesCore"
+ AbstractFFTsTestExt = "Test"
+
+[[deps.AbstractTrees]]
+git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c"
+uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
+version = "0.4.4"
[[deps.Adapt]]
deps = ["LinearAlgebra", "Requires"]
-git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24"
+git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433"
uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
-version = "3.6.2"
+version = "3.7.1"
weakdeps = ["StaticArrays"]
[deps.Adapt.extensions]
@@ -44,6 +50,46 @@ version = "2.3.0"
uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
version = "1.1.1"
+[[deps.ArnoldiMethod]]
+deps = ["LinearAlgebra", "Random", "StaticArrays"]
+git-tree-sha1 = "62e51b39331de8911e4a7ff6f5aaf38a5f4cc0ae"
+uuid = "ec485272-7323-5ecc-a04f-4719b315124d"
+version = "0.2.0"
+
+[[deps.Arpack]]
+deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"]
+git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436"
+uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97"
+version = "0.5.4"
+
+[[deps.Arpack_jll]]
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"]
+git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e"
+uuid = "68821587-b530-5797-8361-c406ea357684"
+version = "3.5.1+1"
+
+[[deps.ArrayInterface]]
+deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"]
+git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0"
+uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
+version = "7.5.1"
+
+ [deps.ArrayInterface.extensions]
+ ArrayInterfaceBandedMatricesExt = "BandedMatrices"
+ ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices"
+ ArrayInterfaceCUDAExt = "CUDA"
+ ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore"
+ ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore"
+ ArrayInterfaceTrackerExt = "Tracker"
+
+ [deps.ArrayInterface.weakdeps]
+ BandedMatrices = "aae01518-5342-5314-be14-df237901396f"
+ BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0"
+ CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
+ GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527"
+ StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
+ Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
+
[[deps.Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
@@ -53,6 +99,12 @@ git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be"
uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458"
version = "0.1.0"
+[[deps.AtomsBase]]
+deps = ["LinearAlgebra", "PeriodicTable", "Printf", "Requires", "StaticArrays", "Unitful", "UnitfulAtomic"]
+git-tree-sha1 = "995c2b6b17840cd87b722ce9c6cdd72f47bab545"
+uuid = "a963bdd2-2df7-4f54-a1ee-49d51e6be12a"
+version = "0.3.5"
+
[[deps.BFloat16s]]
deps = ["LinearAlgebra", "Printf", "Random", "Test"]
git-tree-sha1 = "dbf84058d0a8cbbadee18d25cf606934b22d7c66"
@@ -97,6 +149,11 @@ git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d"
uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35"
version = "0.1.7"
+[[deps.BufferedStreams]]
+git-tree-sha1 = "4ae47f9a4b1dc19897d3743ff13685925c5202ec"
+uuid = "e1450e63-4bb3-523b-b2a4-4ffa8c0fd77d"
+version = "1.2.1"
+
[[deps.Bzip2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2"
@@ -116,9 +173,9 @@ version = "0.10.11"
[[deps.CUDA]]
deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "35160ef0f03b14768abfd68b830f8e3940e8e0dc"
+git-tree-sha1 = "968c1365e2992824c3e7a794e30907483f8469a9"
uuid = "052768ef-5323-5732-b1bb-66c8b64840ba"
-version = "4.4.0"
+version = "4.4.1"
[[deps.CUDA_Driver_jll]]
deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
@@ -140,9 +197,9 @@ version = "0.6.0+0"
[[deps.CUDNN_jll]]
deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "c30b29597102341a1ea4c2175c4acae9ae522c9d"
+git-tree-sha1 = "75923dce4275ead3799b238e10178a68c07dbd3b"
uuid = "62b44479-cb7b-5706-934f-f13b2eb2e645"
-version = "8.9.2+0"
+version = "8.9.4+0"
[[deps.Cairo_jll]]
deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
@@ -161,6 +218,7 @@ deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Un
git-tree-sha1 = "1568b28f91293458345dabba6a5ea3f183250a61"
uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597"
version = "0.10.8"
+weakdeps = ["JSON", "RecipesBase", "SentinelArrays", "StructTypes"]
[deps.CategoricalArrays.extensions]
CategoricalArraysJSONExt = "JSON"
@@ -168,17 +226,11 @@ version = "0.10.8"
CategoricalArraysSentinelArraysExt = "SentinelArrays"
CategoricalArraysStructTypesExt = "StructTypes"
- [deps.CategoricalArrays.weakdeps]
- JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
- RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
- SentinelArrays = "91c51154-3ec4-41a3-a24f-3f23e20d615c"
- StructTypes = "856f2bd8-1eba-4b0a-8007-ebc267875bd4"
-
[[deps.CategoricalDistributions]]
deps = ["CategoricalArrays", "Distributions", "Missings", "OrderedCollections", "Random", "ScientificTypes"]
-git-tree-sha1 = "da68989f027dcefa74d44a452c9e36af9730a70d"
+git-tree-sha1 = "3124343a1b0c9a2f5fdc1d9bcc633ba11735a4c4"
uuid = "af321ab8-2d2e-40a6-b165-3d674595d28e"
-version = "0.1.10"
+version = "0.1.13"
[deps.CategoricalDistributions.extensions]
UnivariateFiniteDisplayExt = "UnicodePlots"
@@ -186,29 +238,50 @@ version = "0.1.10"
[deps.CategoricalDistributions.weakdeps]
UnicodePlots = "b8865327-cd53-5732-bb35-84acbb429228"
+[[deps.Chain]]
+git-tree-sha1 = "8c4920235f6c561e401dfe569beb8b924adad003"
+uuid = "8be319e6-bccf-4806-a6f7-6fae938471bc"
+version = "0.5.0"
+
[[deps.ChainRules]]
-deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"]
-git-tree-sha1 = "2afc496e94d15a1af5502625246d172361542133"
+deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"]
+git-tree-sha1 = "710940598100496ad6cbb707e481c28186354197"
uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
-version = "1.52.0"
+version = "1.57.0"
[[deps.ChainRulesCore]]
-deps = ["Compat", "LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644"
+deps = ["Compat", "LinearAlgebra"]
+git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf"
uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "1.16.0"
+version = "1.18.0"
+weakdeps = ["SparseArrays"]
+
+ [deps.ChainRulesCore.extensions]
+ ChainRulesCoreSparseArraysExt = "SparseArrays"
+
+[[deps.Chemfiles]]
+deps = ["AtomsBase", "Chemfiles_jll", "DocStringExtensions", "PeriodicTable", "Unitful", "UnitfulAtomic"]
+git-tree-sha1 = "82fe5e341c793cb51149d993307da9543824b206"
+uuid = "46823bd8-5fb3-5f92-9aa0-96921f3dd015"
+version = "0.10.41"
+
+[[deps.Chemfiles_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "f3743181e30d87c23d9c8ebd493b77f43d8f1890"
+uuid = "78a364fa-1a3c-552a-b4bb-8fa0f9c1fcca"
+version = "0.10.4+0"
[[deps.CodecZlib]]
deps = ["TranscodingStreams", "Zlib_jll"]
-git-tree-sha1 = "9c209fb7536406834aa938fb149964b985de6c83"
+git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8"
uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
-version = "0.7.1"
+version = "0.7.3"
[[deps.ColorSchemes]]
deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
-git-tree-sha1 = "be6ab11021cd29f0344d5c4357b163af05a48cba"
+git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129"
uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4"
-version = "3.21.0"
+version = "3.24.0"
[[deps.ColorTypes]]
deps = ["FixedPointNumbers", "Random"]
@@ -217,10 +290,14 @@ uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f"
version = "0.11.4"
[[deps.ColorVectorSpace]]
-deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "SpecialFunctions", "Statistics", "TensorCore"]
-git-tree-sha1 = "600cc5508d66b78aae350f7accdb58763ac18589"
+deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"]
+git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249"
uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4"
-version = "0.9.10"
+version = "0.10.0"
+weakdeps = ["SpecialFunctions"]
+
+ [deps.ColorVectorSpace.extensions]
+ SpecialFunctionsExt = "SpecialFunctions"
[[deps.Colors]]
deps = ["ColorTypes", "FixedPointNumbers", "Reexport"]
@@ -241,9 +318,9 @@ version = "0.3.0"
[[deps.Compat]]
deps = ["UUIDs"]
-git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d"
+git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "4.7.0"
+version = "4.10.0"
weakdeps = ["Dates", "LinearAlgebra"]
[deps.Compat.extensions]
@@ -252,7 +329,7 @@ weakdeps = ["Dates", "LinearAlgebra"]
[[deps.CompilerSupportLibraries_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
-version = "1.0.2+0"
+version = "1.0.5+0"
[[deps.CompositionsBase]]
git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad"
@@ -272,15 +349,21 @@ version = "0.3.2"
[[deps.ConcurrentUtilities]]
deps = ["Serialization", "Sockets"]
-git-tree-sha1 = "96d823b94ba8d187a6d8f0826e731195a74b90e9"
+git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519"
uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
-version = "2.2.0"
+version = "2.3.0"
+
+[[deps.ConformalPrediction]]
+deps = ["CategoricalArrays", "ChainRules", "ComputationalResources", "Flux", "LazyArtifacts", "LinearAlgebra", "MLJBase", "MLJEnsembles", "MLJFlux", "MLJModelInterface", "MLUtils", "NaturalSort", "ProgressMeter", "Random", "Serialization", "StatsBase", "Tables"]
+git-tree-sha1 = "5ae9a307c350e2afeb411b2f4cc89ac2efbe9823"
+uuid = "98bfc277-1877-43dc-819b-a3e38c30242f"
+version = "0.1.12"
[[deps.ConstructionBase]]
deps = ["LinearAlgebra"]
-git-tree-sha1 = "738fec4d684a9a6ee9598a8bfee305b26831f28c"
+git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9"
uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9"
-version = "1.5.2"
+version = "1.5.4"
[deps.ConstructionBase.extensions]
ConstructionBaseIntervalSetsExt = "IntervalSets"
@@ -301,6 +384,22 @@ git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781"
uuid = "d38c429a-6771-53c6-b99e-75d170b6e991"
version = "0.6.2"
+[[deps.CounterfactualExplanations]]
+deps = ["CSV", "CUDA", "CategoricalArrays", "Chain", "ChainRulesCore", "DataFrames", "DecisionTree", "Distributions", "EvoTrees", "Flux", "LaplaceRedux", "LazyArtifacts", "LinearAlgebra", "MLDatasets", "MLJBase", "MLJDecisionTreeInterface", "MLJModels", "MLUtils", "MultivariateStats", "NearestNeighborModels", "PackageExtensionCompat", "Parameters", "Plots", "ProgressMeter", "Random", "Serialization", "SnoopPrecompile", "Statistics", "StatsBase", "Tables", "UMAP"]
+git-tree-sha1 = "8393721ffa3c9be209a93eb154d0d9fe9ca187d5"
+uuid = "2f13d31b-18db-44c1-bc43-ebaf2cff0be0"
+version = "0.1.15"
+
+ [deps.CounterfactualExplanations.extensions]
+ MPIExt = "MPI"
+ PythonCallExt = "PythonCall"
+ RCallExt = "RCall"
+
+ [deps.CounterfactualExplanations.weakdeps]
+ MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
+ PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d"
+ RCall = "6f49c342-dc21-5d91-9882-a32aef131414"
+
[[deps.Crayons]]
git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15"
uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
@@ -311,17 +410,23 @@ git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c"
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
version = "1.15.0"
+[[deps.DataDeps]]
+deps = ["HTTP", "Libdl", "Reexport", "SHA", "p7zip_jll"]
+git-tree-sha1 = "6e8d74545d34528c30ccd3fa0f3c00f8ed49584c"
+uuid = "124859b0-ceae-595e-8997-d05f6a7a8dfe"
+version = "0.7.11"
+
[[deps.DataFrames]]
-deps = ["Compat", "DataAPI", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
-git-tree-sha1 = "aa51303df86f8626a962fccb878430cdb0a97eee"
+deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
+git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8"
uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
-version = "1.5.0"
+version = "1.6.1"
[[deps.DataStructures]]
deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
-git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4"
+git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d"
uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
-version = "0.18.14"
+version = "0.18.15"
[[deps.DataValueInterfaces]]
git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
@@ -332,6 +437,12 @@ version = "1.0.0"
deps = ["Printf"]
uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
+[[deps.DecisionTree]]
+deps = ["AbstractTrees", "DelimitedFiles", "LinearAlgebra", "Random", "ScikitLearnBase", "Statistics"]
+git-tree-sha1 = "526ca14aaaf2d5a0e242f3a8a7966eb9065d7d78"
+uuid = "7806a523-6efd-50cb-b5f6-3fa6f1930dbb"
+version = "0.12.4"
+
[[deps.DefineSingletons]]
git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c"
uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52"
@@ -356,28 +467,35 @@ uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
version = "1.15.1"
[[deps.Distances]]
-deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"]
-git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2"
+deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
+git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151"
uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
-version = "0.10.8"
+version = "0.10.10"
+weakdeps = ["ChainRulesCore", "SparseArrays"]
+
+ [deps.Distances.extensions]
+ DistancesChainRulesCoreExt = "ChainRulesCore"
+ DistancesSparseArraysExt = "SparseArrays"
[[deps.Distributed]]
deps = ["Random", "Serialization", "Sockets"]
uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
[[deps.Distributions]]
-deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
-git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d"
+deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
+git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.98"
+version = "0.25.103"
[deps.Distributions.extensions]
DistributionsChainRulesCoreExt = "ChainRulesCore"
DistributionsDensityInterfaceExt = "DensityInterface"
+ DistributionsTestExt = "Test"
[deps.Distributions.weakdeps]
ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d"
+ Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
[[deps.DocStringExtensions]]
deps = ["LibGit2"]
@@ -386,10 +504,10 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
version = "0.9.3"
[[deps.Documenter]]
-deps = ["ANSIColoredPrinters", "Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"]
-git-tree-sha1 = "39fd748a73dce4c05a9655475e437170d8fb1b67"
+deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "Dates", "DocStringExtensions", "Downloads", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "Test", "Unicode"]
+git-tree-sha1 = "662fb21ae7fad33e044c2b59ece832fdce32c171"
uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
-version = "0.27.25"
+version = "1.1.2"
[[deps.Downloads]]
deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
@@ -402,12 +520,34 @@ git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566"
uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74"
version = "0.6.8"
+[[deps.EarCut_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "e3290f2d49e661fbd94046d7e3726ffcb2d41053"
+uuid = "5ae413db-bbd1-5e63-b57d-d24a61df00f5"
+version = "2.2.4+0"
+
[[deps.EarlyStopping]]
deps = ["Dates", "Statistics"]
git-tree-sha1 = "98fdf08b707aaf69f524a6cd0a67858cefe0cfb6"
uuid = "792122b4-ca99-40de-a6bc-6742525f08b6"
version = "0.3.0"
+[[deps.EpollShim_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643"
+uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43"
+version = "0.0.20230411+0"
+
+[[deps.EvoTrees]]
+deps = ["BSON", "CategoricalArrays", "Distributions", "MLJModelInterface", "NetworkLayout", "Random", "RecipesBase", "Statistics", "StatsBase", "Tables"]
+git-tree-sha1 = "6bae99c964218fcb9af8b0cca80f9bd278d59dcb"
+uuid = "f6006082-12f8-11e9-0c9c-0d5d367ab1e5"
+version = "0.16.4"
+weakdeps = ["CUDA"]
+
+ [deps.EvoTrees.extensions]
+ EvoTreesCUDAExt = "CUDA"
+
[[deps.ExceptionUnwrapping]]
deps = ["Test"]
git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96"
@@ -421,9 +561,14 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
version = "2.5.0+0"
[[deps.ExprTools]]
-git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00"
+git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec"
uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04"
-version = "0.1.9"
+version = "0.1.10"
+
+[[deps.Extents]]
+git-tree-sha1 = "2140cd04483da90b2da7f99b2add0750504fc39c"
+uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910"
+version = "0.1.2"
[[deps.FFMPEG]]
deps = ["FFMPEG_jll"]
@@ -432,10 +577,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a"
version = "0.4.1"
[[deps.FFMPEG_jll]]
-deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"]
-git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd"
+deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"]
+git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e"
uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5"
-version = "4.4.2+2"
+version = "4.4.4+1"
[[deps.FLoops]]
deps = ["BangBang", "Compat", "FLoopsBase", "InitialValues", "JuliaVariables", "MLStyle", "Serialization", "Setfield", "Transducers"]
@@ -457,18 +602,39 @@ version = "1.16.1"
[[deps.FilePathsBase]]
deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"]
-git-tree-sha1 = "e27c4ebe80e8699540f2d6c805cc12203b614f12"
+git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa"
uuid = "48062228-2e41-5def-b9a4-89aafe57970f"
-version = "0.9.20"
+version = "0.9.21"
[[deps.FileWatching]]
uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
[[deps.FillArrays]]
-deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
-git-tree-sha1 = "2250347838b28a108d1967663cba57bfb3c02a58"
+deps = ["LinearAlgebra", "Random"]
+git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef"
uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "1.3.0"
+version = "1.7.0"
+weakdeps = ["SparseArrays", "Statistics"]
+
+ [deps.FillArrays.extensions]
+ FillArraysSparseArraysExt = "SparseArrays"
+ FillArraysStatisticsExt = "Statistics"
+
+[[deps.FiniteDiff]]
+deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"]
+git-tree-sha1 = "c6e4a1fbe73b31a3dea94b1da449503b8830c306"
+uuid = "6a86dc24-6348-571c-b903-95158fe2bd41"
+version = "2.21.1"
+
+ [deps.FiniteDiff.extensions]
+ FiniteDiffBandedMatricesExt = "BandedMatrices"
+ FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices"
+ FiniteDiffStaticArraysExt = "StaticArrays"
+
+ [deps.FiniteDiff.weakdeps]
+ BandedMatrices = "aae01518-5342-5314-be14-df237901396f"
+ BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0"
+ StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
[[deps.FixedPointNumbers]]
deps = ["Statistics"]
@@ -504,9 +670,9 @@ version = "0.4.2"
[[deps.ForwardDiff]]
deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"]
-git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d"
+git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad"
uuid = "f6369f11-7733-5829-9624-2563aa707210"
-version = "0.10.35"
+version = "0.10.36"
weakdeps = ["StaticArrays"]
[deps.ForwardDiff.extensions]
@@ -526,9 +692,9 @@ version = "1.0.10+0"
[[deps.Functors]]
deps = ["LinearAlgebra"]
-git-tree-sha1 = "478f8c3145bb91d82c2cf20433e8c1b30df454cc"
+git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545"
uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196"
-version = "0.4.4"
+version = "0.4.5"
[[deps.Future]]
deps = ["Random"]
@@ -554,21 +720,39 @@ version = "0.1.5"
[[deps.GPUCompiler]]
deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"]
-git-tree-sha1 = "d60b5fe7333b5fa41a0378ead6614f1ab51cf6d0"
+git-tree-sha1 = "72b2e3c2ba583d1a7aa35129e56cf92e07c083e3"
uuid = "61eb1bfa-7361-4325-ad38-22787b887f55"
-version = "0.21.3"
+version = "0.21.4"
[[deps.GR]]
deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"]
-git-tree-sha1 = "8b8a2fd4536ece6e554168c21860b6820a8a83db"
+git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f"
uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71"
-version = "0.72.7"
+version = "0.72.10"
[[deps.GR_jll]]
-deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"]
-git-tree-sha1 = "19fad9cd9ae44847fe842558a744748084a722d1"
+deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"]
+git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd"
uuid = "d2c73de3-f751-5644-a686-071e5b155ba9"
-version = "0.72.7+0"
+version = "0.72.10+0"
+
+[[deps.GZip]]
+deps = ["Libdl", "Zlib_jll"]
+git-tree-sha1 = "6388a2d8e409ce23de7d03a7c73d83c5753b3eb2"
+uuid = "92fee26a-97fe-5a0c-ad85-20a5f3185b63"
+version = "0.6.1"
+
+[[deps.GeoInterface]]
+deps = ["Extents"]
+git-tree-sha1 = "d53480c0793b13341c40199190f92c611aa2e93c"
+uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f"
+version = "1.3.2"
+
+[[deps.GeometryBasics]]
+deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"]
+git-tree-sha1 = "424a5a6ce7c5d97cca7bcc4eac551b97294c54af"
+uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326"
+version = "0.4.9"
[[deps.Gettext_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"]
@@ -577,10 +761,15 @@ uuid = "78b55507-aeef-58d4-861c-77aaff3498b1"
version = "0.21.0+0"
[[deps.Glib_jll]]
-deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Pkg", "Zlib_jll"]
-git-tree-sha1 = "d3b3624125c1474292d0d8ed0f65554ac37ddb23"
+deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"]
+git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17"
uuid = "7746bdde-850d-59dc-9ae8-88ece973131d"
-version = "2.74.0+2"
+version = "2.76.5+0"
+
+[[deps.Glob]]
+git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496"
+uuid = "c27321d9-0574-5035-807b-f59d2c89b15c"
+version = "1.3.1"
[[deps.Graphite2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -588,16 +777,40 @@ git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011"
uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472"
version = "1.3.14+0"
+[[deps.Graphs]]
+deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"]
+git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7"
+uuid = "86223c79-3864-5bf0-83f7-82e725a168b6"
+version = "1.9.0"
+
[[deps.Grisu]]
git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2"
uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe"
version = "1.0.2"
+[[deps.HDF5]]
+deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"]
+git-tree-sha1 = "26407bd1c60129062cec9da63dc7d08251544d53"
+uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f"
+version = "0.17.1"
+
+ [deps.HDF5.extensions]
+ MPIExt = "MPI"
+
+ [deps.HDF5.weakdeps]
+ MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
+
+[[deps.HDF5_jll]]
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"]
+git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739"
+uuid = "0234f1f7-429e-5d53-9886-15a909be8d59"
+version = "1.14.2+1"
+
[[deps.HTTP]]
deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
-git-tree-sha1 = "7f5ef966a02a8fdf3df2ca03108a88447cb3c6f0"
+git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce"
uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
-version = "1.9.8"
+version = "1.10.0"
[[deps.HarfBuzz_jll]]
deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"]
@@ -605,11 +818,17 @@ git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3"
uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566"
version = "2.8.1+1"
+[[deps.Hwloc_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "8ecb0b34472a3c98f945e3c75fc7d5428d165511"
+uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8"
+version = "2.9.3+0"
+
[[deps.HypergeometricFunctions]]
deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"]
-git-tree-sha1 = "0ec02c648befc2f94156eaef13b0f38106212f3f"
+git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685"
uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
-version = "0.3.17"
+version = "0.3.23"
[[deps.IOCapture]]
deps = ["Logging", "Random"]
@@ -619,9 +838,32 @@ version = "0.2.3"
[[deps.IRTools]]
deps = ["InteractiveUtils", "MacroTools", "Test"]
-git-tree-sha1 = "eac00994ce3229a464c2847e956d77a2c64ad3a5"
+git-tree-sha1 = "8aa91235360659ca7560db43a7d57541120aa31d"
uuid = "7869d1d1-7146-5819-86e3-90919afe41df"
-version = "0.4.10"
+version = "0.4.11"
+
+[[deps.ImageBase]]
+deps = ["ImageCore", "Reexport"]
+git-tree-sha1 = "eb49b82c172811fd2c86759fa0553a2221feb909"
+uuid = "c817782e-172a-44cc-b673-b171935fbb9e"
+version = "0.1.7"
+
+[[deps.ImageCore]]
+deps = ["AbstractFFTs", "ColorVectorSpace", "Colors", "FixedPointNumbers", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "PrecompileTools", "Reexport"]
+git-tree-sha1 = "fc5d1d3443a124fde6e92d0260cd9e064eba69f8"
+uuid = "a09fc81d-aa75-5fe9-8630-4744c3626534"
+version = "0.10.1"
+
+[[deps.ImageShow]]
+deps = ["Base64", "ColorSchemes", "FileIO", "ImageBase", "ImageCore", "OffsetArrays", "StackViews"]
+git-tree-sha1 = "3b5344bcdbdc11ad58f3b1956709b5b9345355de"
+uuid = "4e3cecfd-b093-5904-9786-8bbb286a6a31"
+version = "0.3.8"
+
+[[deps.Inflate]]
+git-tree-sha1 = "ea8031dea4aff6bd41f1df8f2fdfb25b33626381"
+uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9"
+version = "0.1.4"
[[deps.InitialValues]]
git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3"
@@ -638,6 +880,12 @@ version = "1.4.0"
deps = ["Markdown"]
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
+[[deps.InternedStrings]]
+deps = ["Random", "Test"]
+git-tree-sha1 = "eb05b5625bc5d821b8075a77e4c421933e20c76b"
+uuid = "7d512f48-7fb1-5a58-b986-67e6dc259f01"
+version = "0.7.0"
+
[[deps.InvertedIndices]]
git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038"
uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f"
@@ -648,6 +896,11 @@ git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2"
uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
version = "0.2.2"
+[[deps.IterTools]]
+git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450"
+uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e"
+version = "1.8.0"
+
[[deps.IterationControl]]
deps = ["EarlyStopping", "InteractiveUtils"]
git-tree-sha1 = "d7df9a6fdd82a8cfdfe93a94fcce35515be634da"
@@ -659,17 +912,23 @@ git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
uuid = "82899510-4779-5014-852e-03e436cf321d"
version = "1.0.0"
+[[deps.JLD2]]
+deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"]
+git-tree-sha1 = "9bbb5130d3b4fa52846546bca4791ecbdfb52730"
+uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
+version = "0.4.38"
+
[[deps.JLFzf]]
deps = ["Pipe", "REPL", "Random", "fzf_jll"]
-git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185"
+git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d"
uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c"
-version = "0.1.5"
+version = "0.1.6"
[[deps.JLLWrappers]]
-deps = ["Preferences"]
-git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1"
+deps = ["Artifacts", "Preferences"]
+git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca"
uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
-version = "1.4.1"
+version = "1.5.0"
[[deps.JSON]]
deps = ["Dates", "Mmap", "Parsers", "Unicode"]
@@ -677,6 +936,12 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a"
uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
version = "0.21.4"
+[[deps.JSON3]]
+deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"]
+git-tree-sha1 = "95220473901735a0f4df9d1ca5b171b568b2daa3"
+uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1"
+version = "1.13.2"
+
[[deps.JpegTurbo_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc"
@@ -690,10 +955,16 @@ uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec"
version = "0.2.4"
[[deps.KernelAbstractions]]
-deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1"
+deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"]
+git-tree-sha1 = "95063c5bc98ba0c47e75e05ae71f1fed4deac6f6"
uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
-version = "0.9.6"
+version = "0.9.12"
+
+ [deps.KernelAbstractions.extensions]
+ EnzymeExt = "EnzymeCore"
+
+ [deps.KernelAbstractions.weakdeps]
+ EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869"
[[deps.LAME_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -708,16 +979,20 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d"
version = "3.0.0+1"
[[deps.LLVM]]
-deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"]
-git-tree-sha1 = "7d5788011dd273788146d40eb5b1fbdc199d0296"
+deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"]
+git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3"
uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
-version = "6.0.1"
+version = "6.4.0"
+weakdeps = ["BFloat16s"]
+
+ [deps.LLVM.extensions]
+ BFloat16sExt = "BFloat16s"
[[deps.LLVMExtra_jll]]
deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "1222116d7313cdefecf3d45a2bc1a89c4e7c9217"
+git-tree-sha1 = "a84f8f1e8caaaa4e3b4c101306b9e801d3883ace"
uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab"
-version = "0.0.22+0"
+version = "0.0.27+0"
[[deps.LLVMOpenMP_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -732,15 +1007,15 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac"
version = "2.10.1+0"
[[deps.LaTeXStrings]]
-git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996"
+git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec"
uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
-version = "1.3.0"
+version = "1.3.1"
[[deps.LaplaceRedux]]
-deps = ["CSV", "Compat", "ComputationalResources", "DataFrames", "DelimitedFiles", "Flux", "JSON", "LinearAlgebra", "MLJ", "MLJBase", "MLJFlux", "MLJModelInterface", "MLUtils", "Parameters", "Plots", "ProgressMeter", "Random", "Serialization", "Statistics", "Tables", "Tullio", "Zygote"]
+deps = ["Compat", "ComputationalResources", "Flux", "LinearAlgebra", "MLJFlux", "MLJModelInterface", "MLUtils", "Parameters", "ProgressMeter", "Random", "Statistics", "Tables", "Tullio", "Zygote", "cuDNN"]
path = ".."
uuid = "c52c1a26-f7c5-402b-80be-ba1e638ad478"
-version = "0.1.2"
+version = "0.1.3"
[[deps.Latexify]]
deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"]
@@ -762,10 +1037,20 @@ git-tree-sha1 = "825289d43c753c7f1bf9bed334c253e9913997f8"
uuid = "a5e1c1ea-c99a-51d3-a14d-a9a37257b02d"
version = "1.9.0"
+[[deps.LazilyInitializedFields]]
+git-tree-sha1 = "410fe4739a4b092f2ffe36fcb0dcc3ab12648ce1"
+uuid = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf"
+version = "1.2.1"
+
[[deps.LazyArtifacts]]
deps = ["Artifacts", "Pkg"]
uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3"
+[[deps.LazyModules]]
+git-tree-sha1 = "a560dd966b386ac9ae60bdd3a3d3a326062d3c3e"
+uuid = "8cdb02fc-e678-4876-92c5-9defec4f444e"
+version = "0.3.1"
+
[[deps.LibCURL]]
deps = ["LibCURL_jll", "MozillaCACerts_jll"]
uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
@@ -813,10 +1098,10 @@ uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8"
version = "1.42.0+0"
[[deps.Libiconv_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "c7cb1f5d892775ba13767a87c7ada0b980ea0a71"
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175"
uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
-version = "1.16.1+2"
+version = "1.17.0+0"
[[deps.Libmount_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -825,10 +1110,10 @@ uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9"
version = "2.35.0+0"
[[deps.Libtiff_jll]]
-deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "Pkg", "Zlib_jll", "Zstd_jll"]
-git-tree-sha1 = "3eb79b0ca5764d4799c06699573fd8f533259713"
+deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"]
+git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a"
uuid = "89763e89-9b03-5906-acba-b20f662cd828"
-version = "4.4.0+0"
+version = "4.5.1+1"
[[deps.Libuuid_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -842,9 +1127,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
[[deps.LogExpFunctions]]
deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]
-git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f"
+git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa"
uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
-version = "0.3.24"
+version = "0.3.26"
[deps.LogExpFunctions.extensions]
LogExpFunctionsChainRulesCoreExt = "ChainRulesCore"
@@ -861,27 +1146,61 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
[[deps.LoggingExtras]]
deps = ["Dates", "Logging"]
-git-tree-sha1 = "cedb76b37bc5a6c702ade66be44f831fa23c681e"
+git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075"
uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
-version = "1.0.0"
+version = "1.0.3"
[[deps.LossFunctions]]
-deps = ["CategoricalArrays", "Markdown", "Statistics"]
-git-tree-sha1 = "44a7bfeb7b5eb9386a62b9cccc6e21f406c15bea"
+deps = ["Markdown", "Requires", "Statistics"]
+git-tree-sha1 = "df9da07efb9b05ca7ef701acec891ee8f73c99e2"
uuid = "30fc2ffe-d236-52d8-8643-a9d8f7c094a7"
-version = "0.10.0"
+version = "0.11.1"
+weakdeps = ["CategoricalArrays"]
+
+ [deps.LossFunctions.extensions]
+ LossFunctionsCategoricalArraysExt = "CategoricalArrays"
+
+[[deps.LsqFit]]
+deps = ["Distributions", "ForwardDiff", "LinearAlgebra", "NLSolversBase", "OptimBase", "Random", "StatsBase"]
+git-tree-sha1 = "00f475f85c50584b12268675072663dfed5594b2"
+uuid = "2fda8390-95c7-5789-9bda-21331edee243"
+version = "0.13.0"
+
+[[deps.MAT]]
+deps = ["BufferedStreams", "CodecZlib", "HDF5", "SparseArrays"]
+git-tree-sha1 = "ed1cf0a322d78cee07718bed5fd945e2218c35a1"
+uuid = "23992714-dd62-5051-b70f-ba57cb901cac"
+version = "0.10.6"
+
+[[deps.MLDatasets]]
+deps = ["CSV", "Chemfiles", "DataDeps", "DataFrames", "DelimitedFiles", "FileIO", "FixedPointNumbers", "GZip", "Glob", "HDF5", "ImageShow", "JLD2", "JSON3", "LazyModules", "MAT", "MLUtils", "NPZ", "Pickle", "Printf", "Requires", "SparseArrays", "Statistics", "Tables"]
+git-tree-sha1 = "aab72207b3c687086a400be710650a57494992bd"
+uuid = "eb30cadb-4394-5ae3-aed4-317e484a6458"
+version = "0.7.14"
+
+[[deps.MLFlowClient]]
+deps = ["Dates", "FilePathsBase", "HTTP", "JSON", "ShowCases", "URIs", "UUIDs"]
+git-tree-sha1 = "32cee10a6527476bef0c6484ff4c60c2cead5d3e"
+uuid = "64a0f543-368b-4a9a-827a-e71edb2a0b83"
+version = "0.4.4"
[[deps.MLJ]]
-deps = ["CategoricalArrays", "ComputationalResources", "Distributed", "Distributions", "LinearAlgebra", "MLJBase", "MLJEnsembles", "MLJIteration", "MLJModels", "MLJTuning", "OpenML", "Pkg", "ProgressMeter", "Random", "ScientificTypes", "Statistics", "StatsBase", "Tables"]
-git-tree-sha1 = "d26cd777c711c332019b39445823cbb1f6cdb7e5"
+deps = ["CategoricalArrays", "ComputationalResources", "Distributed", "Distributions", "LinearAlgebra", "MLJBase", "MLJEnsembles", "MLJFlow", "MLJIteration", "MLJModels", "MLJTuning", "OpenML", "Pkg", "ProgressMeter", "Random", "Reexport", "ScientificTypes", "Statistics", "StatsBase", "Tables"]
+git-tree-sha1 = "193f1f1ac77d91eabe1ac81ff48646b378270eef"
uuid = "add582a8-e3ab-11e8-2d5e-e98b27df1bc7"
-version = "0.19.2"
+version = "0.19.5"
[[deps.MLJBase]]
deps = ["CategoricalArrays", "CategoricalDistributions", "ComputationalResources", "Dates", "DelimitedFiles", "Distributed", "Distributions", "InteractiveUtils", "InvertedIndices", "LinearAlgebra", "LossFunctions", "MLJModelInterface", "Missings", "OrderedCollections", "Parameters", "PrettyTables", "ProgressMeter", "Random", "ScientificTypes", "Serialization", "StatisticalTraits", "Statistics", "StatsBase", "Tables"]
-git-tree-sha1 = "4cc167b6c0a3ab25d7050e4ac38fe119e97cd1ab"
+git-tree-sha1 = "0b7307d1a7214ec3c0ba305571e713f9492ea984"
uuid = "a7f614a8-145f-11e9-1d2a-a57a1082229d"
-version = "0.21.11"
+version = "0.21.14"
+
+[[deps.MLJDecisionTreeInterface]]
+deps = ["CategoricalArrays", "DecisionTree", "MLJModelInterface", "Random", "Tables"]
+git-tree-sha1 = "8059d088428cbe215ea0eb2199a58da2d806d446"
+uuid = "c6f25543-311c-4c74-83dc-3ea6d1015661"
+version = "0.4.0"
[[deps.MLJEnsembles]]
deps = ["CategoricalArrays", "CategoricalDistributions", "ComputationalResources", "Distributed", "Distributions", "MLJBase", "MLJModelInterface", "ProgressMeter", "Random", "ScientificTypesBase", "StatsBase"]
@@ -889,11 +1208,17 @@ git-tree-sha1 = "95b306ef8108067d26dfde9ff3457d59911cc0d6"
uuid = "50ed68f4-41fd-4504-931a-ed422449fee0"
version = "0.3.3"
+[[deps.MLJFlow]]
+deps = ["MLFlowClient", "MLJBase", "MLJModelInterface"]
+git-tree-sha1 = "bceeeb648c9aa2fc6f65f957c688b164d30f2905"
+uuid = "7b7b8358-b45c-48ea-a8ef-7ca328ad328f"
+version = "0.1.1"
+
[[deps.MLJFlux]]
deps = ["CategoricalArrays", "ColorTypes", "ComputationalResources", "Flux", "MLJModelInterface", "Metalhead", "ProgressMeter", "Random", "Statistics", "Tables"]
-git-tree-sha1 = "b27c3b96cc2a602a1e91eba36b8ca3d796f30ae0"
+git-tree-sha1 = "40f9e99a6770bc795f70f1908316e1491488a7b7"
uuid = "094fc8d1-fd35-5302-93ea-dabda2abf845"
-version = "0.2.10"
+version = "0.3.1"
[[deps.MLJIteration]]
deps = ["IterationControl", "MLJBase", "Random", "Serialization"]
@@ -903,15 +1228,15 @@ version = "0.5.1"
[[deps.MLJModelInterface]]
deps = ["Random", "ScientificTypesBase", "StatisticalTraits"]
-git-tree-sha1 = "c8b7e632d6754a5e36c0d94a4b466a5ba3a30128"
+git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223"
uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea"
-version = "1.8.0"
+version = "1.9.3"
[[deps.MLJModels]]
deps = ["CategoricalArrays", "CategoricalDistributions", "Combinatorics", "Dates", "Distances", "Distributions", "InteractiveUtils", "LinearAlgebra", "MLJModelInterface", "Markdown", "OrderedCollections", "Parameters", "Pkg", "PrettyPrinting", "REPL", "Random", "RelocatableFolders", "ScientificTypes", "StatisticalTraits", "Statistics", "StatsBase", "Tables"]
-git-tree-sha1 = "38c3b4af6e52edcd94144c32dc1bea335dbfaec7"
+git-tree-sha1 = "10d221910fc3f3eedad567178ddbca3cc0f776a3"
uuid = "d491faf4-2d78-11e9-2867-c94bc002c0b7"
-version = "0.16.8"
+version = "0.16.12"
[[deps.MLJTuning]]
deps = ["ComputationalResources", "Distributed", "Distributions", "LatinHypercubeSampling", "MLJBase", "ProgressMeter", "Random", "RecipesBase"]
@@ -930,16 +1255,51 @@ git-tree-sha1 = "3504cdb8c2bc05bde4d4b09a81b01df88fcbbba0"
uuid = "f1d291b0-491e-4a28-83b9-f70985020b54"
version = "0.4.3"
+[[deps.MPICH_jll]]
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
+git-tree-sha1 = "8a5b4d2220377d1ece13f49438d71ad20cf1ba83"
+uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4"
+version = "4.1.2+0"
+
+[[deps.MPIPreferences]]
+deps = ["Libdl", "Preferences"]
+git-tree-sha1 = "8f6af051b9e8ec597fa09d8885ed79fd582f33c9"
+uuid = "3da0fdf6-3ccc-4f1b-acd9-58baa6c99267"
+version = "0.1.10"
+
+[[deps.MPItrampoline_jll]]
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
+git-tree-sha1 = "6979eccb6a9edbbb62681e158443e79ecc0d056a"
+uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748"
+version = "5.3.1+0"
+
[[deps.MacroTools]]
deps = ["Markdown", "Random"]
-git-tree-sha1 = "42324d08725e200c23d4dfb549e0d5d89dede2d2"
+git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48"
uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
-version = "0.5.10"
+version = "0.5.11"
+
+[[deps.ManifoldLearning]]
+deps = ["Combinatorics", "Graphs", "LinearAlgebra", "MultivariateStats", "Random", "SparseArrays", "Statistics", "StatsAPI"]
+git-tree-sha1 = "4c5564c707899c3b6bc6d324b05e43eb7f277f2b"
+uuid = "06eb3307-b2af-5a2a-abea-d33192699d32"
+version = "0.9.0"
+
+[[deps.MappedArrays]]
+git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e"
+uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900"
+version = "0.4.2"
[[deps.Markdown]]
deps = ["Base64"]
uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
+[[deps.MarkdownAST]]
+deps = ["AbstractTrees", "Markdown"]
+git-tree-sha1 = "465a70f0fc7d443a00dcdc3267a497397b8a3899"
+uuid = "d0879d2d-cac2-40c8-9cee-1863dc0c7391"
+version = "0.1.2"
+
[[deps.MbedTLS]]
deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"]
git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b"
@@ -957,10 +1317,10 @@ uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e"
version = "0.3.2"
[[deps.Metalhead]]
-deps = ["Artifacts", "BSON", "Flux", "Functors", "LazyArtifacts", "MLUtils", "NNlib", "Random", "Statistics"]
-git-tree-sha1 = "0e95f91cc5f23610f8f270d7397f307b21e19d2b"
+deps = ["Artifacts", "BSON", "CUDA", "ChainRulesCore", "Flux", "Functors", "JLD2", "LazyArtifacts", "MLUtils", "NNlib", "PartialFunctions", "Random", "Statistics"]
+git-tree-sha1 = "4bbdb628c60c5f473148292df3ecb87058ba515f"
uuid = "dbeba491-748d-5e0e-a39e-b530a07fa0cc"
-version = "0.7.4"
+version = "0.8.3"
[[deps.MicroCollections]]
deps = ["BangBang", "InitialValues", "Setfield"]
@@ -968,6 +1328,12 @@ git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e"
uuid = "128add7d-3638-4c79-886c-908ea0c25c34"
version = "0.1.4"
+[[deps.MicrosoftMPI_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "b01beb91d20b0d1312a9471a36017b5b339d26de"
+uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf"
+version = "10.1.4+1"
+
[[deps.Missings]]
deps = ["DataAPI"]
git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272"
@@ -983,10 +1349,28 @@ git-tree-sha1 = "4cc0c5a83933648b615c36c2b956d94fda70641e"
uuid = "78c3b35d-d492-501b-9361-3d52fe80e533"
version = "0.7.7"
+[[deps.MosaicViews]]
+deps = ["MappedArrays", "OffsetArrays", "PaddedViews", "StackViews"]
+git-tree-sha1 = "7b86a5d4d70a9f5cdf2dacb3cbe6d251d1a61dbe"
+uuid = "e94cdb99-869f-56ef-bcf0-1ae2bcbe0389"
+version = "0.3.4"
+
[[deps.MozillaCACerts_jll]]
uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
version = "2022.10.11"
+[[deps.MultivariateStats]]
+deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsBase"]
+git-tree-sha1 = "6d019f5a0465522bbfdd68ecfad7f86b535d6935"
+uuid = "6f286f6a-111f-5878-ab1e-185364afe411"
+version = "0.9.0"
+
+[[deps.NLSolversBase]]
+deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"]
+git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c"
+uuid = "d41bc354-129a-5804-8e4c-c37616107c6c"
+version = "7.8.3"
+
[[deps.NNlib]]
deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"]
git-tree-sha1 = "72240e3f5ca031937bd536182cb2c031da5f46dd"
@@ -1005,6 +1389,12 @@ git-tree-sha1 = "f94a9684394ff0d325cc12b06da7032d8be01aaf"
uuid = "a00861dc-f156-4864-bf3c-e6376f28a68d"
version = "0.2.7"
+[[deps.NPZ]]
+deps = ["FileIO", "ZipFile"]
+git-tree-sha1 = "60a8e272fe0c5079363b28b0953831e2dd7b7e6f"
+uuid = "15e1cf62-19b3-5cfa-8e77-841668bca605"
+version = "0.4.3"
+
[[deps.NaNMath]]
deps = ["OpenLibm_jll"]
git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4"
@@ -1017,10 +1407,49 @@ git-tree-sha1 = "1a0fa0e9613f46c9b8c11eee38ebb4f590013c5e"
uuid = "71a1bf82-56d0-4bbc-8a3c-48b961074391"
version = "0.1.5"
+[[deps.NaturalSort]]
+git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21"
+uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85"
+version = "1.0.0"
+
+[[deps.NearestNeighborDescent]]
+deps = ["DataStructures", "Distances", "Graphs", "Random", "Reexport", "SparseArrays"]
+git-tree-sha1 = "b7d4bd2ab58f0c3a001fd6eedc2e0aac8e278152"
+uuid = "dd2c4c9e-a32f-5b2f-b342-08c2f244fce8"
+version = "0.3.6"
+
+[[deps.NearestNeighborModels]]
+deps = ["Distances", "FillArrays", "InteractiveUtils", "LinearAlgebra", "MLJModelInterface", "NearestNeighbors", "Statistics", "StatsBase", "Tables"]
+git-tree-sha1 = "e411143a8362926e4284a54e745972e939fbab78"
+uuid = "636a865e-7cf4-491e-846c-de09b730eb36"
+version = "0.2.3"
+
+[[deps.NearestNeighbors]]
+deps = ["Distances", "StaticArrays"]
+git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8"
+uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce"
+version = "0.4.13"
+
+[[deps.NetworkLayout]]
+deps = ["GeometryBasics", "LinearAlgebra", "Random", "Requires", "StaticArrays"]
+git-tree-sha1 = "91bb2fedff8e43793650e7a677ccda6e6e6e166b"
+uuid = "46757867-2c16-5918-afeb-47bfcb05e46a"
+version = "0.4.6"
+weakdeps = ["Graphs"]
+
+ [deps.NetworkLayout.extensions]
+ NetworkLayoutGraphsExt = "Graphs"
+
[[deps.NetworkOptions]]
uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
version = "1.2.0"
+[[deps.OffsetArrays]]
+deps = ["Adapt"]
+git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb"
+uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
+version = "1.12.10"
+
[[deps.Ogg_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f"
@@ -1049,6 +1478,12 @@ git-tree-sha1 = "6efb039ae888699d5a74fb593f6f3e10c7193e33"
uuid = "8b6db2d4-7670-4922-a472-f9537c81ab66"
version = "0.3.1"
+[[deps.OpenMPI_jll]]
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "PMIx_jll", "TOML", "Zlib_jll", "libevent_jll", "prrte_jll"]
+git-tree-sha1 = "694458ae803b684f09c07f90459cb79655fb377d"
+uuid = "fe0851c0-eecd-5654-98d4-656369965a5c"
+version = "5.0.0+0"
+
[[deps.OpenSSL]]
deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"]
git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2"
@@ -1057,9 +1492,9 @@ version = "1.4.1"
[[deps.OpenSSL_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "1aa4b74f80b01c6bc2b89992b861b5f210e665b5"
+git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f"
uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
-version = "1.1.21+0"
+version = "3.0.12+0"
[[deps.OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
@@ -1067,11 +1502,17 @@ git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1"
uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
version = "0.5.5+0"
+[[deps.OptimBase]]
+deps = ["NLSolversBase", "Printf", "Reexport"]
+git-tree-sha1 = "9cb1fee807b599b5f803809e85c81b582d2009d6"
+uuid = "87e2bd06-a317-5318-96d9-3ecbac512eee"
+version = "2.0.2"
+
[[deps.Optimisers]]
deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"]
-git-tree-sha1 = "6a01f65dd8583dee82eecc2a19b0ff21521aa749"
+git-tree-sha1 = "c1fc26bab5df929a5172f296f25d7d08688fd25b"
uuid = "3bd65402-5787-11e9-1adc-39752487f4e2"
-version = "0.2.18"
+version = "0.2.20"
[[deps.Opus_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -1080,9 +1521,9 @@ uuid = "91d4177d-7536-5919-b921-800302f37372"
version = "1.3.2+0"
[[deps.OrderedCollections]]
-git-tree-sha1 = "d321bf2de576bf25ec4d3e4360faca399afca282"
+git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3"
uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
-version = "1.6.0"
+version = "1.6.2"
[[deps.PCRE2_jll]]
deps = ["Artifacts", "Libdl"]
@@ -1091,9 +1532,27 @@ version = "10.42.0+0"
[[deps.PDMats]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1"
+git-tree-sha1 = "66b2fcd977db5329aa35cac121e5b94dd6472198"
uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.17"
+version = "0.11.28"
+
+[[deps.PMIx_jll]]
+deps = ["Artifacts", "Hwloc_jll", "JLLWrappers", "Libdl", "Zlib_jll", "libevent_jll"]
+git-tree-sha1 = "8b3b19351fa24791f94d7ae85faf845ca1362541"
+uuid = "32165bc3-0280-59bc-8c0b-c33b6203efab"
+version = "4.2.7+0"
+
+[[deps.PackageExtensionCompat]]
+git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518"
+uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930"
+version = "1.0.2"
+weakdeps = ["Requires", "TOML"]
+
+[[deps.PaddedViews]]
+deps = ["OffsetArrays"]
+git-tree-sha1 = "0fac6313486baae819364c52b4f483450a9d793f"
+uuid = "5432bcbf-9aad-5242-b902-cca2824c8663"
+version = "0.5.12"
[[deps.Parameters]]
deps = ["OrderedCollections", "UnPack"]
@@ -1103,9 +1562,27 @@ version = "0.12.3"
[[deps.Parsers]]
deps = ["Dates", "PrecompileTools", "UUIDs"]
-git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29"
+git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851"
uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
-version = "2.7.1"
+version = "2.7.2"
+
+[[deps.PartialFunctions]]
+deps = ["MacroTools"]
+git-tree-sha1 = "47b49a4dbc23b76682205c646252c0f9e1eb75af"
+uuid = "570af359-4316-4cb7-8c74-252c00c2016b"
+version = "1.2.0"
+
+[[deps.PeriodicTable]]
+deps = ["Base64", "Test", "Unitful"]
+git-tree-sha1 = "9a9731f346797126271405971dfdf4709947718b"
+uuid = "7b2266bf-644c-5ea3-82d8-af4bbd25a884"
+version = "1.1.4"
+
+[[deps.Pickle]]
+deps = ["BFloat16s", "DataStructures", "InternedStrings", "Serialization", "SparseArrays", "Strided", "StringEncodings", "ZipFile"]
+git-tree-sha1 = "2e71d7dbcab8dc47306c0ed6ac6018fbc1a7070f"
+uuid = "fbb45041-c46e-462f-888f-7c521cafbc2c"
+version = "0.3.3"
[[deps.Pipe]]
git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d"
@@ -1121,7 +1598,7 @@ version = "0.42.2+0"
[[deps.Pkg]]
deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
-version = "1.9.0"
+version = "1.9.2"
[[deps.PlotThemes]]
deps = ["PlotUtils", "Statistics"]
@@ -1137,9 +1614,9 @@ version = "1.3.5"
[[deps.Plots]]
deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"]
-git-tree-sha1 = "75ca67b2c6512ad2d0c767a7cfc55e75075f8bbc"
+git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5"
uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
-version = "1.38.16"
+version = "1.39.0"
[deps.Plots.extensions]
FileIOExt = "FileIO"
@@ -1157,21 +1634,21 @@ version = "1.38.16"
[[deps.PooledArrays]]
deps = ["DataAPI", "Future"]
-git-tree-sha1 = "a6062fe4063cdafe78f4a0a81cfffb89721b30e7"
+git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3"
uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720"
-version = "1.4.2"
+version = "1.4.3"
[[deps.PrecompileTools]]
deps = ["Preferences"]
-git-tree-sha1 = "9673d39decc5feece56ef3940e5dafba15ba0f81"
+git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f"
uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a"
-version = "1.1.2"
+version = "1.2.0"
[[deps.Preferences]]
deps = ["TOML"]
-git-tree-sha1 = "7eb1686b4f04b82f96ed7a4ea5890a4f0c7a09f1"
+git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e"
uuid = "21216c6a-2e73-6563-6e65-726566657250"
-version = "1.4.0"
+version = "1.4.1"
[[deps.PrettyPrint]]
git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4"
@@ -1184,10 +1661,10 @@ uuid = "54e16d92-306c-5ea0-a30b-337be88ac337"
version = "0.4.1"
[[deps.PrettyTables]]
-deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"]
-git-tree-sha1 = "213579618ec1f42dea7dd637a42785a608b1ea9c"
+deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"]
+git-tree-sha1 = "6842ce83a836fbbc0cfeca0b5a4de1a4dcbdb8d1"
uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
-version = "2.2.4"
+version = "2.2.8"
[[deps.Printf]]
deps = ["Unicode"]
@@ -1201,21 +1678,21 @@ version = "0.1.4"
[[deps.ProgressMeter]]
deps = ["Distributed", "Printf"]
-git-tree-sha1 = "d7a7aef8f8f2d537104f170139553b14dfe39fe9"
+git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c"
uuid = "92933f4c-e287-5a05-a399-4b506db050ca"
-version = "1.7.2"
+version = "1.9.0"
-[[deps.Qt5Base_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "xkbcommon_jll"]
-git-tree-sha1 = "0c03844e2231e12fda4d0086fd7cbe4098ee8dc5"
-uuid = "ea2cea3b-5b76-57ae-a6ef-0a8af62496e1"
-version = "5.15.3+2"
+[[deps.Qt6Base_jll]]
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"]
+git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b"
+uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56"
+version = "6.5.3+1"
[[deps.QuadGK]]
deps = ["DataStructures", "LinearAlgebra"]
-git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee"
+git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1"
uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
-version = "2.8.2"
+version = "2.9.1"
[[deps.RData]]
deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"]
@@ -1272,11 +1749,17 @@ git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
uuid = "189a3867-3050-52da-a836-e630ba90ab69"
version = "1.2.2"
+[[deps.RegistryInstances]]
+deps = ["LazilyInitializedFields", "Pkg", "TOML", "Tar"]
+git-tree-sha1 = "ffd19052caf598b8653b99404058fce14828be51"
+uuid = "2792f1a3-b283-48e8-9a74-f99dce5104f3"
+version = "0.1.0"
+
[[deps.RelocatableFolders]]
deps = ["SHA", "Scratch"]
-git-tree-sha1 = "90bc7a7c96410424509e4263e277e43250c05691"
+git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864"
uuid = "05181044-ff0b-4ac5-8273-598c1e38db00"
-version = "1.0.0"
+version = "1.0.1"
[[deps.Requires]]
deps = ["UUIDs"]
@@ -1311,17 +1794,23 @@ git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b"
uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161"
version = "3.0.0"
+[[deps.ScikitLearnBase]]
+deps = ["LinearAlgebra", "Random", "Statistics"]
+git-tree-sha1 = "7877e55c1523a4b336b433da39c8e8c08d2f221f"
+uuid = "6e75b9c4-186b-50bd-896f-2d2496a4843e"
+version = "0.5.0"
+
[[deps.Scratch]]
deps = ["Dates"]
-git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a"
+git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386"
uuid = "6c6a2e73-6563-6170-7368-637461726353"
-version = "1.2.0"
+version = "1.2.1"
[[deps.SentinelArrays]]
deps = ["Dates", "Random"]
-git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39"
+git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f"
uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c"
-version = "1.4.0"
+version = "1.4.1"
[[deps.Serialization]]
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
@@ -1332,6 +1821,10 @@ git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac"
uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46"
version = "1.1.1"
+[[deps.SharedArrays]]
+deps = ["Distributed", "Mmap", "Random", "Serialization"]
+uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"
+
[[deps.ShowCases]]
git-tree-sha1 = "7f534ad62ab2bd48591bdeac81994ea8c445e4a5"
uuid = "605ecd9f-84a6-4c9e-81e2-4798472b76a3"
@@ -1365,19 +1858,25 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
[[deps.SortingAlgorithms]]
deps = ["DataStructures"]
-git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee"
+git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63"
uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
-version = "1.1.1"
+version = "1.2.0"
[[deps.SparseArrays]]
deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
+[[deps.SparseInverseSubset]]
+deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
+git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a"
+uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada"
+version = "0.1.1"
+
[[deps.SpecialFunctions]]
deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
-git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3"
+git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d"
uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
-version = "2.3.0"
+version = "2.3.1"
weakdeps = ["ChainRulesCore"]
[deps.SpecialFunctions.extensions]
@@ -1395,20 +1894,26 @@ git-tree-sha1 = "3be7d49667040add7ee151fefaf1f8c04c8c8276"
uuid = "860ef19b-820b-49d6-a774-d7a799459cd3"
version = "1.0.0"
+[[deps.StackViews]]
+deps = ["OffsetArrays"]
+git-tree-sha1 = "46e589465204cd0c08b4bd97385e4fa79a0c770c"
+uuid = "cae243ae-269e-4f55-b966-ac2d0dc13c15"
+version = "0.1.1"
+
[[deps.StaticArrays]]
deps = ["LinearAlgebra", "Random", "StaticArraysCore"]
-git-tree-sha1 = "0da7e6b70d1bb40b1ace3b576da9ea2992f76318"
+git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2"
uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.6.0"
+version = "1.6.5"
weakdeps = ["Statistics"]
[deps.StaticArrays.extensions]
StaticArraysStatisticsExt = "Statistics"
[[deps.StaticArraysCore]]
-git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a"
+git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d"
uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
-version = "1.4.0"
+version = "1.4.2"
[[deps.StatisticalTraits]]
deps = ["ScientificTypesBase"]
@@ -1423,15 +1928,15 @@ version = "1.9.0"
[[deps.StatsAPI]]
deps = ["LinearAlgebra"]
-git-tree-sha1 = "45a7769a04a3cf80da1c1c7c60caf932e6f4c9f7"
+git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed"
uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
-version = "1.6.0"
+version = "1.7.0"
[[deps.StatsBase]]
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
-git-tree-sha1 = "75ebe04c5bed70b91614d684259b661c9e6274a4"
+git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916"
uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
-version = "0.34.0"
+version = "0.33.21"
[[deps.StatsFuns]]
deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
@@ -1447,16 +1952,35 @@ version = "1.3.0"
ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112"
+[[deps.Strided]]
+deps = ["LinearAlgebra", "TupleTools"]
+git-tree-sha1 = "a7a664c91104329c88222aa20264e1a05b6ad138"
+uuid = "5e0ebb24-38b0-5f93-81fe-25c709ecae67"
+version = "1.2.3"
+
+[[deps.StringEncodings]]
+deps = ["Libiconv_jll"]
+git-tree-sha1 = "b765e46ba27ecf6b44faf70df40c57aa3a547dcb"
+uuid = "69024149-9ee7-55f6-a4c4-859efe599b68"
+version = "0.3.7"
+
[[deps.StringManipulation]]
-git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123"
+deps = ["PrecompileTools"]
+git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5"
uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e"
-version = "0.3.0"
+version = "0.3.4"
[[deps.StructArrays]]
-deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"]
-git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389"
+deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"]
+git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213"
uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
-version = "0.6.15"
+version = "0.6.16"
+
+[[deps.StructTypes]]
+deps = ["Dates", "UUIDs"]
+git-tree-sha1 = "ca4bccb03acf9faaf4137a9abc1881ed1841aa70"
+uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4"
+version = "1.10.0"
[[deps.SuiteSparse]]
deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
@@ -1472,6 +1996,12 @@ deps = ["Dates"]
uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
version = "1.0.3"
+[[deps.TZJData]]
+deps = ["Artifacts"]
+git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1"
+uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7"
+version = "1.0.0+2023c"
+
[[deps.TableTraits]]
deps = ["IteratorInterfaceExtensions"]
git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39"
@@ -1479,10 +2009,16 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
version = "1.0.1"
[[deps.Tables]]
-deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"]
-git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec"
+deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"]
+git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d"
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "1.10.1"
+version = "1.11.1"
+
+[[deps.TaijaPlotting]]
+deps = ["CategoricalArrays", "ConformalPrediction", "CounterfactualExplanations", "DataAPI", "Distributions", "Flux", "LaplaceRedux", "LinearAlgebra", "MLJBase", "ManifoldLearning", "MultivariateStats", "NaturalSort", "NearestNeighborModels", "Plots"]
+path = "../../TaijaPlotting.jl"
+uuid = "bd7198b4-c7d6-400c-9bab-9a24614b0240"
+version = "1.0.2"
[[deps.Tar]]
deps = ["ArgTools", "SHA"]
@@ -1500,10 +2036,14 @@ deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
[[deps.TimeZones]]
-deps = ["Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "RecipesBase", "Scratch", "Unicode"]
-git-tree-sha1 = "cdaa0c2a4449724aded839550eca7d7240bb6938"
+deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"]
+git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03"
uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53"
-version = "1.10.0"
+version = "1.13.0"
+weakdeps = ["RecipesBase"]
+
+ [deps.TimeZones.extensions]
+ TimeZonesRecipesBaseExt = "RecipesBase"
[[deps.TimerOutputs]]
deps = ["ExprTools", "Printf"]
@@ -1512,16 +2052,19 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
version = "0.5.23"
[[deps.TranscodingStreams]]
-deps = ["Random", "Test"]
-git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769"
+git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84"
uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.9.13"
+version = "0.10.2"
+weakdeps = ["Random", "Test"]
+
+ [deps.TranscodingStreams.extensions]
+ TestExt = ["Test", "Random"]
[[deps.Transducers]]
-deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"]
-git-tree-sha1 = "a66fb81baec325cf6ccafa243af573b031e87b00"
+deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"]
+git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141"
uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999"
-version = "0.4.77"
+version = "0.4.79"
[deps.Transducers.extensions]
TransducersBlockArraysExt = "BlockArrays"
@@ -1538,15 +2081,38 @@ version = "0.4.77"
Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e"
[[deps.Tullio]]
-deps = ["ChainRulesCore", "DiffRules", "LinearAlgebra", "Requires"]
-git-tree-sha1 = "7871a39eac745697ee512a87eeff06a048a7905b"
+deps = ["DiffRules", "LinearAlgebra", "Requires"]
+git-tree-sha1 = "6d476962ba4e435d7f4101a403b1d3d72afe72f3"
uuid = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc"
-version = "0.3.5"
+version = "0.3.7"
+
+ [deps.Tullio.extensions]
+ TullioCUDAExt = "CUDA"
+ TullioChainRulesCoreExt = "ChainRulesCore"
+ TullioFillArraysExt = "FillArrays"
+ TullioTrackerExt = "Tracker"
+
+ [deps.Tullio.weakdeps]
+ CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
+ ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
+ FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b"
+ Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
+
+[[deps.TupleTools]]
+git-tree-sha1 = "155515ed4c4236db30049ac1495e2969cc06be9d"
+uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6"
+version = "1.4.3"
+
+[[deps.UMAP]]
+deps = ["Arpack", "Distances", "LinearAlgebra", "LsqFit", "NearestNeighborDescent", "Random", "SparseArrays"]
+git-tree-sha1 = "accad220f075445f68caa6488be728957a5d82d6"
+uuid = "c4f8c510-2410-5be4-91d7-4fbaeb39457e"
+version = "0.1.10"
[[deps.URIs]]
-git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a"
+git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b"
uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
-version = "1.4.2"
+version = "1.5.1"
[[deps.UUIDs]]
deps = ["Random", "SHA"]
@@ -1568,9 +2134,9 @@ version = "0.4.1"
[[deps.Unitful]]
deps = ["Dates", "LinearAlgebra", "Random"]
-git-tree-sha1 = "c4d2a349259c8eba66a00a540d550f122a3ab228"
+git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee"
uuid = "1986cc42-f94f-5a68-af5c-568840ba703d"
-version = "1.15.0"
+version = "1.17.0"
[deps.Unitful.extensions]
ConstructionBaseUnitfulExt = "ConstructionBase"
@@ -1580,6 +2146,12 @@ version = "1.15.0"
ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9"
InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112"
+[[deps.UnitfulAtomic]]
+deps = ["Unitful"]
+git-tree-sha1 = "903be579194534af1c4b4778d1ace676ca042238"
+uuid = "a7773ee8-282e-5fa2-be4e-bd808c38a91a"
+version = "1.0.0"
+
[[deps.UnitfulLatexify]]
deps = ["LaTeXStrings", "Latexify", "Unitful"]
git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd"
@@ -1602,11 +2174,17 @@ git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78"
uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d"
version = "0.2.0"
+[[deps.Vulkan_Loader_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"]
+git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59"
+uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c"
+version = "1.3.243+0"
+
[[deps.Wayland_jll]]
-deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"]
-git-tree-sha1 = "ed8d92d9774b077c53e1da50fd81a36af3744c1c"
+deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"]
+git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703"
uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89"
-version = "1.21.0+0"
+version = "1.21.0+1"
[[deps.Wayland_protocols_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -1626,10 +2204,10 @@ uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60"
version = "1.6.1"
[[deps.XML2_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"]
-git-tree-sha1 = "93c41695bc1c08c46c5899f4fe06d6ead504bb73"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
+git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916"
uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
-version = "2.10.3+0"
+version = "2.11.5+0"
[[deps.XSLT_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"]
@@ -1637,6 +2215,24 @@ git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a"
uuid = "aed1982a-8fda-507f-9586-7b0439959a61"
version = "1.1.34+0"
+[[deps.XZ_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0"
+uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800"
+version = "5.4.4+0"
+
+[[deps.Xorg_libICE_jll]]
+deps = ["Libdl", "Pkg"]
+git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5"
+uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c"
+version = "1.0.10+1"
+
+[[deps.Xorg_libSM_jll]]
+deps = ["Libdl", "Pkg", "Xorg_libICE_jll"]
+git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18"
+uuid = "c834827a-8449-5923-a945-d239c165b7dd"
+version = "1.2.3+0"
+
[[deps.Xorg_libX11_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"]
git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495"
@@ -1715,6 +2311,12 @@ git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4"
uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a"
version = "1.1.2+0"
+[[deps.Xorg_xcb_util_cursor_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"]
+git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd"
+uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43"
+version = "0.1.4+0"
+
[[deps.Xorg_xcb_util_image_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"]
git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97"
@@ -1763,6 +2365,12 @@ git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77"
uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10"
version = "1.5.0+0"
+[[deps.ZipFile]]
+deps = ["Libdl", "Printf", "Zlib_jll"]
+git-tree-sha1 = "f492b7fe1698e623024e873244f10d89c95c340a"
+uuid = "a5390f91-8eb1-5f08-bee0-b1d1ffed6cea"
+version = "0.10.1"
+
[[deps.Zlib_jll]]
deps = ["Libdl"]
uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
@@ -1776,9 +2384,9 @@ version = "1.5.5+0"
[[deps.Zygote]]
deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"]
-git-tree-sha1 = "5be3ddb88fc992a7d8ea96c3f10a49a7e98ebc7b"
+git-tree-sha1 = "5ded212acd815612df112bb895ef3910c5a03f57"
uuid = "e88e6eb3-aa80-5325-afca-941959d7151f"
-version = "0.6.62"
+version = "0.6.67"
[deps.Zygote.extensions]
ZygoteColorsExt = "Colors"
@@ -1792,21 +2400,39 @@ version = "0.6.62"
[[deps.ZygoteRules]]
deps = ["ChainRulesCore", "MacroTools"]
-git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d"
+git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184"
uuid = "700de1a5-db45-46bc-99cf-38207098b444"
-version = "0.2.3"
+version = "0.2.4"
[[deps.cuDNN]]
deps = ["CEnum", "CUDA", "CUDNN_jll"]
-git-tree-sha1 = "ee79f97d07bf875231559f9b3f2649f34fac140b"
+git-tree-sha1 = "5a1ba43303c62f4a09b0d6751422de03424ab0cd"
uuid = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd"
-version = "1.1.0"
+version = "1.1.1"
+
+[[deps.eudev_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"]
+git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba"
+uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06"
+version = "3.2.9+0"
[[deps.fzf_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56"
+git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e"
uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09"
-version = "0.29.0+0"
+version = "0.35.1+0"
+
+[[deps.gperf_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033"
+uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70"
+version = "3.1.1+0"
+
+[[deps.libaec_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "eddd19a8dea6b139ea97bdc8a0e2667d4b661720"
+uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0"
+version = "1.0.6+1"
[[deps.libaom_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -1825,12 +2451,30 @@ deps = ["Artifacts", "Libdl"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.8.0+0"
+[[deps.libevdev_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22"
+uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc"
+version = "1.11.0+0"
+
+[[deps.libevent_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll"]
+git-tree-sha1 = "f04ec6d9a186115fb38f858f05c0c4e1b7fc9dcb"
+uuid = "1080aeaf-3a6a-583e-a51c-c537b09f60ec"
+version = "2.1.13+1"
+
[[deps.libfdk_aac_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55"
uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280"
version = "2.0.2+0"
+[[deps.libinput_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"]
+git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce"
+uuid = "36db933b-70db-51c0-b978-0f229ee0e533"
+version = "1.18.0+0"
+
[[deps.libpng_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c"
@@ -1843,6 +2487,12 @@ git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c"
uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a"
version = "1.3.7+1"
+[[deps.mtdev_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11"
+uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e"
+version = "1.1.6+0"
+
[[deps.nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
@@ -1853,6 +2503,12 @@ deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
version = "17.4.0+0"
+[[deps.prrte_jll]]
+deps = ["Artifacts", "Hwloc_jll", "JLLWrappers", "Libdl", "PMIx_jll", "libevent_jll"]
+git-tree-sha1 = "5adb2d7a18a30280feb66cad6f1a1dfdca2dc7b0"
+uuid = "eb928a42-fffd-568d-ab9c-3f5d54fc65b9"
+version = "3.0.2+0"
+
[[deps.x264_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2"
@@ -1867,6 +2523,6 @@ version = "3.5.0+0"
[[deps.xkbcommon_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"]
-git-tree-sha1 = "9ebfc140cc56e8c2156a15ceac2f0302e327ac0a"
+git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37"
uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd"
-version = "1.4.1+0"
+version = "1.4.1+1"
diff --git a/docs/Project.toml b/docs/Project.toml
index 67898d65..5c13cd29 100644
--- a/docs/Project.toml
+++ b/docs/Project.toml
@@ -8,4 +8,5 @@ Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b"
Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
+TaijaPlotting = "bd7198b4-c7d6-400c-9bab-9a24614b0240"
Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
diff --git a/docs/src/_intro.qmd b/docs/src/_intro.qmd
index b9dbe1e8..13990a3e 100644
--- a/docs/src/_intro.qmd
+++ b/docs/src/_intro.qmd
@@ -5,7 +5,7 @@
#| echo: false
using Pkg; Pkg.activate("docs")
# Import libraries
-using Flux, Plots, Random, Statistics, LaplaceRedux, LinearAlgebra
+using Flux, Plots, TaijaPlotting, Random, Statistics, LaplaceRedux, LinearAlgebra
```
`LaplaceRedux.jl` is a library written in pure Julia that can be used for effortless Bayesian Deep Learning through Laplace Approximation (LA). In the development of this package I have drawn inspiration from this Python [library](https://aleximmer.github.io/Laplace/index.html#setup) and its companion [paper](https://arxiv.org/abs/2106.14806) [@daxberger2021laplace].
@@ -80,11 +80,12 @@ for epoch = 1:epochs
end
```
-A complete worked example for a regression model can be found in the [docs](https://www.paltmeyer.com/LaplaceRedux.jl/dev/tutorials/regression/). Here we jump straight to Laplace Approximation and take the pre-trained model `nn` as given. Then LA can be implemented as follows, where we specify the model `likelihood`. The plot show the fitted values overlaid with a 95% confidence interval. As expected, predictive uncertainty quickly increases in areas that are not populated by any training data.
+A complete worked example for a regression model can be found in the [docs](https://www.paltmeyer.com/LaplaceRedux.jl/dev/tutorials/regression/). Here we jump straight to Laplace Approximation and take the pre-trained model `nn` as given. Then LA can be implemented as follows, where we specify the model `likelihood`. The plot shows the fitted values overlaid with a 95% confidence interval. As expected, predictive uncertainty quickly increases in areas that are not populated by any training data.
```{julia}
#| output: true
+
la = Laplace(nn; likelihood=:regression)
fit!(la, data)
optimize_prior!(la)
@@ -137,7 +138,7 @@ loss(x, y) = Flux.Losses.logitbinarycrossentropy(nn(x), y)
# Training:
opt = Adam()
-epochs = 100
+epochs = 500
avg_loss(data) = mean(map(d -> loss(d[1],d[2]), data))
show_every = epochs/10
@@ -160,12 +161,10 @@ Once again we jump straight to LA and refer to the [docs](https://www.paltmeyer.
```{julia}
#| output: true
-theme(:lime)
-
la = Laplace(nn; likelihood=:classification)
fit!(la, data)
la_untuned = deepcopy(la) # saving for plotting
-optimize_prior!(la; n_steps=500)
+optimize_prior!(la; n_steps=100)
# Plot the posterior predictive distribution:
zoom=0
diff --git a/docs/src/tutorials/logit.qmd b/docs/src/tutorials/logit.qmd
index 2b3e8736..18dc9a76 100644
--- a/docs/src/tutorials/logit.qmd
+++ b/docs/src/tutorials/logit.qmd
@@ -8,7 +8,7 @@ CurrentModule = LaplaceRedux
#| echo: false
using Pkg; Pkg.activate("docs")
# Import libraries
-using Flux, Plots, Random, Statistics, LaplaceRedux, LinearAlgebra
+using Flux, Plots, TaijaPlotting, Random, Statistics, LaplaceRedux, LinearAlgebra
theme(:lime)
```
diff --git a/docs/src/tutorials/mlp.qmd b/docs/src/tutorials/mlp.qmd
index e78d9d09..74d24cc7 100644
--- a/docs/src/tutorials/mlp.qmd
+++ b/docs/src/tutorials/mlp.qmd
@@ -8,7 +8,7 @@ CurrentModule = LaplaceRedux
#| echo: false
using Pkg; Pkg.activate("docs")
# Import libraries
-using Flux, Plots, Random, Statistics, LaplaceRedux, LinearAlgebra
+using Flux, Plots, TaijaPlotting, Random, Statistics, LaplaceRedux, LinearAlgebra
theme(:lime)
```
diff --git a/docs/src/tutorials/multi.qmd b/docs/src/tutorials/multi.qmd
index 7d46dade..9333bffc 100644
--- a/docs/src/tutorials/multi.qmd
+++ b/docs/src/tutorials/multi.qmd
@@ -4,7 +4,7 @@
#| echo: false
using Pkg; Pkg.activate("docs")
# Import libraries
-using Flux, Plots, Random, Statistics, LaplaceRedux
+using Flux, Plots, TaijaPlotting, Random, Statistics, LaplaceRedux
theme(:lime)
```
diff --git a/docs/src/tutorials/prior.qmd b/docs/src/tutorials/prior.qmd
index e172bea5..be28e64e 100644
--- a/docs/src/tutorials/prior.qmd
+++ b/docs/src/tutorials/prior.qmd
@@ -6,7 +6,7 @@ CurrentModule = LaplaceRedux
#| echo: false
using Pkg; Pkg.activate("docs")
# Import libraries
-using Flux, Plots, Random, Statistics, LaplaceRedux, LinearAlgebra
+using Flux, Plots, TaijaPlotting, Random, Statistics, LaplaceRedux, LinearAlgebra
```
| !!! note \"In Progress\"
diff --git a/docs/src/tutorials/regression.qmd b/docs/src/tutorials/regression.qmd
index 4fa00f40..d113921c 100644
--- a/docs/src/tutorials/regression.qmd
+++ b/docs/src/tutorials/regression.qmd
@@ -6,7 +6,7 @@ CurrentModule = LaplaceRedux
#| echo: false
using Pkg; Pkg.activate("docs")
# Import libraries
-using Flux, Plots, Random, Statistics, LaplaceRedux
+using Flux, Plots, TaijaPlotting, Random, Statistics, LaplaceRedux
theme(:wong)
```