diff --git a/README.md b/README.md index 2311747..d1b8892 100755 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ ![](dev/logo/wide_logo.png) -[![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://juliatrustworthyai.github.io/ConformalPrediction.jl/stable/) [![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://juliatrustworthyai.github.io/ConformalPrediction.jl/dev/) [![Build Status](https://github.com/juliatrustworthyai/ConformalPrediction.jl/actions/workflows/CI.yml/badge.svg?branch=main)](https://github.com/juliatrustworthyai/ConformalPrediction.jl/actions/workflows/CI.yml?query=branch%3Amain) [![Coverage](https://codecov.io/gh/juliatrustworthyai/ConformalPrediction.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/juliatrustworthyai/ConformalPrediction.jl) [![Code Style: Blue](https://img.shields.io/badge/code%20style-blue-4495d1.svg)](https://github.com/invenia/BlueStyle) [![License](https://img.shields.io/github/license/juliatrustworthyai/ConformalPrediction.jl)](LICENSE) [![Package Downloads](https://shields.io/endpoint?url=https://pkgs.genieframework.com/api/v1/badge/ConformalPrediction/.png)](https://pkgs.genieframework.com?packages=ConformalPrediction) [![Aqua QA](https://raw.githubusercontent.com/JuliaTesting/Aqua.jl/master/badge.svg)](https://github.com/JuliaTesting/Aqua.jl) +[![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://juliatrustworthyai.github.io/ConformalPrediction.jl/stable/) [![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://juliatrustworthyai.github.io/ConformalPrediction.jl/dev/) [![Build Status](https://github.com/juliatrustworthyai/ConformalPrediction.jl/actions/workflows/CI.yml/badge.svg?branch=main)](https://github.com/juliatrustworthyai/ConformalPrediction.jl/actions/workflows/CI.yml?query=branch%3Amain) [![Coverage](https://codecov.io/gh/juliatrustworthyai/ConformalPrediction.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/juliatrustworthyai/ConformalPrediction.jl) [![Code Style: Blue](https://img.shields.io/badge/code%20style-blue-4495d1.svg)](https://github.com/invenia/BlueStyle) [![License](https://img.shields.io/github/license/juliatrustworthyai/ConformalPrediction.jl)](LICENSE) [![Package Downloads](https://img.shields.io/badge/dynamic/json?url=http%3A%2F%2Fjuliapkgstats.com%2Fapi%2Fv1%2Fmonthly_downloads%2FConformalPrediction&query=total_requests&suffix=%2Fmonth&label=Downloads)](http://juliapkgstats.com/pkg/ConformalPrediction) [![Aqua QA](https://raw.githubusercontent.com/JuliaTesting/Aqua.jl/master/badge.svg)](https://github.com/JuliaTesting/Aqua.jl) # ConformalPrediction diff --git a/README.qmd b/README.qmd index 08e6ede..e3d7169 100755 --- a/README.qmd +++ b/README.qmd @@ -17,12 +17,13 @@ jupyter: julia-1.10 ![](dev/logo/wide_logo.png) -[![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://juliatrustworthyai.github.io/ConformalPrediction.jl/stable/) -[![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://juliatrustworthyai.github.io/ConformalPrediction.jl/dev/) -[![Build Status](https://github.com/juliatrustworthyai/ConformalPrediction.jl/actions/workflows/CI.yml/badge.svg?branch=main)](https://github.com/juliatrustworthyai/ConformalPrediction.jl/actions/workflows/CI.yml?query=branch%3Amain) -[![Coverage](https://codecov.io/gh/juliatrustworthyai/ConformalPrediction.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/juliatrustworthyai/ConformalPrediction.jl) -[![Code Style: Blue](https://img.shields.io/badge/code%20style-blue-4495d1.svg)](https://github.com/invenia/BlueStyle) - [![License](https://img.shields.io/github/license/juliatrustworthyai/ConformalPrediction.jl)](LICENSE) - [![Package Downloads](https://shields.io/endpoint?url=https://pkgs.genieframework.com/api/v1/badge/ConformalPrediction/)](https://pkgs.genieframework.com?packages=ConformalPrediction) [![Aqua QA](https://raw.githubusercontent.com/JuliaTesting/Aqua.jl/master/badge.svg)](https://github.com/JuliaTesting/Aqua.jl) +[![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://juliatrustworthyai.github.io/ConformalPrediction.jl/stable/) +[![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://juliatrustworthyai.github.io/ConformalPrediction.jl/dev/) +[![Build Status](https://github.com/juliatrustworthyai/ConformalPrediction.jl/actions/workflows/CI.yml/badge.svg?branch=main)](https://github.com/juliatrustworthyai/ConformalPrediction.jl/actions/workflows/CI.yml?query=branch%3Amain) +[![Coverage](https://codecov.io/gh/juliatrustworthyai/ConformalPrediction.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/juliatrustworthyai/ConformalPrediction.jl) +[![Code Style: Blue](https://img.shields.io/badge/code%20style-blue-4495d1.svg)](https://github.com/invenia/BlueStyle) +[![License](https://img.shields.io/github/license/juliatrustworthyai/ConformalPrediction.jl)](LICENSE) +[![Package Downloads](https://img.shields.io/badge/dynamic/json?url=http%3A%2F%2Fjuliapkgstats.com%2Fapi%2Fv1%2Fmonthly_downloads%2FConformalPrediction&query=total_requests&suffix=%2Fmonth&label=Downloads)](http://juliapkgstats.com/pkg/ConformalPrediction) +[![Aqua QA](https://raw.githubusercontent.com/JuliaTesting/Aqua.jl/master/badge.svg)](https://github.com/JuliaTesting/Aqua.jl) {{< include docs/src/_intro.qmd >}} \ No newline at end of file diff --git a/README_files/figure-commonmark/cell-12-output-1.svg b/README_files/figure-commonmark/cell-12-output-1.svg index 4f303a5..8545744 100644 --- a/README_files/figure-commonmark/cell-12-output-1.svg +++ b/README_files/figure-commonmark/cell-12-output-1.svg @@ -1,49 +1,49 @@ - + - + - + - + - + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/README_files/figure-commonmark/cell-7-output-1.svg b/README_files/figure-commonmark/cell-7-output-1.svg index 2c89ce0..e6bb6ae 100755 --- a/README_files/figure-commonmark/cell-7-output-1.svg +++ b/README_files/figure-commonmark/cell-7-output-1.svg @@ -1,287 +1,287 @@ - + - + - + - + - + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/docs/Manifest.toml b/docs/Manifest.toml index c7df2d0..70ff09e 100755 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.2" manifest_format = "2.0" -project_hash = "40ac88472fdbbe01f0c4807f430a730c0b580121" +project_hash = "f260e6044258819421ecdfb072681efa64f51cff" [[deps.ANSIColoredPrinters]] git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c" @@ -28,9 +28,9 @@ weakdeps = ["ChainRulesCore", "Test"] [[deps.AbstractPlutoDingetjes]] deps = ["Pkg"] -git-tree-sha1 = "0f748c81756f2e5e6854298f11ad8b2dfae6911a" +git-tree-sha1 = "6e1d2a35f2f90a4bc7c2ed98079b2ba09c35b83a" uuid = "6e696c72-6542-2067-7265-42206c756150" -version = "1.3.0" +version = "1.3.2" [[deps.AbstractTrees]] git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" @@ -60,14 +60,20 @@ version = "0.1.36" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.7.2" +version = "4.0.4" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] AdaptStaticArraysExt = "StaticArrays" +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "ca95b2220ef440817963baa71525a8f2f4ae7f8f" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.0.0" + [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" @@ -79,9 +85,9 @@ version = "1.1.1" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] -git-tree-sha1 = "62e51b39331de8911e4a7ff6f5aaf38a5f4cc0ae" +git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" uuid = "ec485272-7323-5ecc-a04f-4719b315124d" -version = "0.2.0" +version = "0.4.0" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -96,16 +102,19 @@ uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.1+1" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.7.1" +version = "7.10.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -113,7 +122,10 @@ version = "7.7.1" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" @@ -134,9 +146,9 @@ version = "0.3.5" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -185,9 +197,9 @@ version = "0.1.1" [[deps.BetaML]] deps = ["AbstractTrees", "CategoricalArrays", "Combinatorics", "DelimitedFiles", "Distributions", "DocStringExtensions", "ForceImport", "JLD2", "LinearAlgebra", "LoopVectorization", "MLJModelInterface", "PDMats", "PrecompileTools", "Printf", "ProgressMeter", "Random", "Reexport", "StableRNGs", "StaticArrays", "Statistics", "StatsBase", "Test", "Zygote"] -git-tree-sha1 = "c4d0c28b4b049169a4d5a5ae39bbc1dfdf3d5e08" +git-tree-sha1 = "649aa716c3e0decc04732c607648fb73e23ddc4b" uuid = "024491cd-cc6b-443e-8034-08ea7eb7db2b" -version = "0.11.3" +version = "0.11.4" [[deps.BitFlags]] git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" @@ -205,12 +217,6 @@ git-tree-sha1 = "4ae47f9a4b1dc19897d3743ff13685925c5202ec" uuid = "e1450e63-4bb3-523b-b2a4-4ffa8c0fd77d" version = "1.2.1" -[[deps.BytePairEncoding]] -deps = ["Artifacts", "Base64", "DataStructures", "DoubleArrayTries", "LazyArtifacts", "StructWalk", "TextEncodeBase", "Unicode"] -git-tree-sha1 = "295253961b9bcb1020bfd8711c7b51311dbfa102" -uuid = "a4280ba5-8788-555a-8ca8-4a8c3d966a71" -version = "0.4.1" - [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" @@ -218,9 +224,9 @@ uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] @@ -230,39 +236,9 @@ version = "0.2.4" [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "a44910ceb69b0d44fe262dd451ab11ead3ed0be8" +git-tree-sha1 = "6c834533dc1fabd820c1db03c839bf97e45a3fab" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.13" - -[[deps.CUDA]] -deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "968c1365e2992824c3e7a794e30907483f8469a9" -uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "4.4.1" - -[[deps.CUDA_Driver_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "498f45593f6ddc0adff64a9310bb6710e851781b" -uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.5.0+1" - -[[deps.CUDA_Runtime_Discovery]] -deps = ["Libdl"] -git-tree-sha1 = "2cb12f6b2209f40a4b8967697689a47c50485490" -uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" -version = "0.2.3" - -[[deps.CUDA_Runtime_jll]] -deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "5248d9c45712e51e27ba9b30eebec65658c6ce29" -uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.6.0+0" - -[[deps.CUDNN_jll]] -deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "75923dce4275ead3799b238e10178a68c07dbd3b" -uuid = "62b44479-cb7b-5706-934f-f13b2eb2e645" -version = "8.9.4+0" +version = "0.10.14" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -297,9 +273,9 @@ weakdeps = ["JSON", "RecipesBase", "SentinelArrays", "StructTypes"] [[deps.CategoricalDistributions]] deps = ["CategoricalArrays", "Distributions", "Missings", "OrderedCollections", "Random", "ScientificTypes"] -git-tree-sha1 = "6d4569d555704cdf91b3417c0667769a4a7cbaa2" +git-tree-sha1 = "926862f549a82d6c3a7145bc7f1adff2a91a39f0" uuid = "af321ab8-2d2e-40a6-b165-3d674595d28e" -version = "0.1.14" +version = "0.1.15" weakdeps = ["UnicodePlots"] [deps.CategoricalDistributions.extensions] @@ -307,9 +283,9 @@ weakdeps = ["UnicodePlots"] [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" +git-tree-sha1 = "e7d1016142a71c980309114ee30a3e4f870902f4" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.63.0" +version = "1.65.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] @@ -359,9 +335,9 @@ version = "3.24.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.11.5" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "SpecialFunctions", "Statistics", "TensorCore"] @@ -417,21 +393,21 @@ version = "0.3.2" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "87944e19ea747808b73178ce5ebb74081fdf2d35" +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.4.0" +version = "2.4.1" [[deps.ConformalPrediction]] -deps = ["CategoricalArrays", "ChainRules", "ComputationalResources", "Flux", "InferOpt", "LazyArtifacts", "LinearAlgebra", "MLJBase", "MLJEnsembles", "MLJFlux", "MLJLinearModels", "MLJModelInterface", "MLUtils", "NaturalSort", "ProgressMeter", "Random", "Serialization", "StatsBase", "Tables", "cuDNN"] +deps = ["CategoricalArrays", "ChainRules", "ComputationalResources", "Flux", "InferOpt", "LinearAlgebra", "MLJBase", "MLJEnsembles", "MLJFlux", "MLJLinearModels", "MLJModelInterface", "MLUtils", "ProgressMeter", "Random", "StatsBase", "Tables"] path = ".." uuid = "98bfc277-1877-43dc-819b-a3e38c30242f" version = "0.1.12" [[deps.ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" +version = "1.5.5" weakdeps = ["IntervalSets", "StaticArrays"] [deps.ConstructionBase.extensions] @@ -445,9 +421,9 @@ uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" version = "0.1.3" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.CoordinateTransformations]] deps = ["LinearAlgebra", "StaticArrays"] @@ -456,20 +432,20 @@ uuid = "150eb455-5306-5404-9cee-2592286d6298" version = "0.6.3" [[deps.CounterfactualExplanations]] -deps = ["CSV", "CUDA", "CategoricalArrays", "ChainRulesCore", "DataFrames", "DecisionTree", "Distributions", "EvoTrees", "Flux", "LaplaceRedux", "LazyArtifacts", "LinearAlgebra", "Logging", "MLDatasets", "MLJBase", "MLJDecisionTreeInterface", "MLJModels", "MLUtils", "MultivariateStats", "NearestNeighborModels", "PackageExtensionCompat", "Parameters", "PrecompileTools", "ProgressMeter", "Random", "Serialization", "Statistics", "StatsBase", "Tables", "UUIDs", "cuDNN"] -git-tree-sha1 = "af4687806d81a3265173fad6250e3902eb659f37" +deps = ["CategoricalArrays", "ChainRulesCore", "DataFrames", "DecisionTree", "Distributions", "Flux", "LazyArtifacts", "LinearAlgebra", "Logging", "MLJBase", "MLJDecisionTreeInterface", "MLUtils", "MultivariateStats", "PackageExtensionCompat", "ProgressMeter", "Random", "Serialization", "Statistics", "StatsBase", "Tables", "TaijaBase", "UUIDs"] +git-tree-sha1 = "be60a64de3a3b46940c402e6bd8a4d6a94208d9c" uuid = "2f13d31b-18db-44c1-bc43-ebaf2cff0be0" -version = "0.1.31" +version = "1.1.4" [deps.CounterfactualExplanations.extensions] - MPIExt = "MPI" - PythonCallExt = "PythonCall" - RCallExt = "RCall" + EvoTreesExt = "EvoTrees" + LaplaceReduxExt = "LaplaceRedux" + NeuroTreeExt = "NeuroTreeModels" [deps.CounterfactualExplanations.weakdeps] - MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + EvoTrees = "f6006082-12f8-11e9-0c9c-0d5d367ab1e5" + LaplaceRedux = "c52c1a26-f7c5-402b-80be-ba1e638ad478" + NeuroTreeModels = "1db4e0a5-a364-4b0c-897c-2bd5a4a3a1f2" [[deps.CpuId]] deps = ["Markdown"] @@ -506,9 +482,9 @@ version = "1.6.1" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "0f4b5d62a88d8f59003e43c25a8a90de9eb76317" +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.18" +version = "0.18.20" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -570,10 +546,10 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.107" +version = "0.25.108" weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] @@ -589,15 +565,9 @@ version = "0.9.3" [[deps.Documenter]] deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "CodecZlib", "Dates", "DocStringExtensions", "Downloads", "Git", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "TOML", "Test", "Unicode"] -git-tree-sha1 = "4a40af50e8b24333b9ec6892546d9ca5724228eb" +git-tree-sha1 = "f15a91e6e3919055efa4f206f942a73fedf5dfe6" uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" -version = "1.3.0" - -[[deps.DoubleArrayTries]] -deps = ["OffsetArrays", "Preferences", "StringViews"] -git-tree-sha1 = "9667af23bda5ce51bad3dd759812c398a58d8b9d" -uuid = "abbaa0e5-f788-499c-92af-c35ff4258c82" -version = "0.1.0" +version = "1.4.0" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] @@ -611,24 +581,30 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicExpressions]] -deps = ["Compat", "LinearAlgebra", "LoopVectorization", "MacroTools", "PackageExtensionCompat", "PrecompileTools", "Printf", "Random", "Reexport", "TOML"] -git-tree-sha1 = "b9d7bcba8809e749a06e15f58f8fada2705bf422" +deps = ["Compat", "MacroTools", "PackageExtensionCompat", "PrecompileTools", "Random", "Reexport", "TOML"] +git-tree-sha1 = "3976ad6cf7fd2b80bee8662dc3dd06f8a67c3fbd" uuid = "a40a106e-89c9-4ca8-8020-a735e8728b6b" -version = "0.13.1" +version = "0.16.0" [deps.DynamicExpressions.extensions] + DynamicExpressionsBumperExt = "Bumper" + DynamicExpressionsLoopVectorizationExt = "LoopVectorization" + DynamicExpressionsOptimExt = "Optim" DynamicExpressionsSymbolicUtilsExt = "SymbolicUtils" DynamicExpressionsZygoteExt = "Zygote" [deps.DynamicExpressions.weakdeps] + Bumper = "8ce10254-0962-460f-a3d8-1f77fea1446e" + LoopVectorization = "bdcacae8-1622-11e9-2a5c-532679323890" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" SymbolicUtils = "d1185830-fcd6-423d-90d6-eec64667417b" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.DynamicQuantities]] deps = ["Compat", "PackageExtensionCompat", "Tricks"] -git-tree-sha1 = "1eb22833c1bf36be85d8f4847ab423a8bf7f7b2d" +git-tree-sha1 = "412b25c7d99ec6b06967d315c7b29bb8e484f092" uuid = "06fc5a27-2a28-4c7c-a15d-362465fb6821" -version = "0.10.3" +version = "0.13.2" [deps.DynamicQuantities.extensions] DynamicQuantitiesLinearAlgebraExt = "LinearAlgebra" @@ -662,14 +638,16 @@ version = "0.0.20230411+0" [[deps.EvoTrees]] deps = ["BSON", "CategoricalArrays", "Distributions", "MLJModelInterface", "NetworkLayout", "Random", "RecipesBase", "Statistics", "StatsBase", "Tables"] -git-tree-sha1 = "e1107e45d7fe1a3c5dd335376bb6333b42cf9d1c" +git-tree-sha1 = "92d1f78f95f4794bf29bd972dacfa37ea1fec9f4" uuid = "f6006082-12f8-11e9-0c9c-0d5d367ab1e5" -version = "0.16.6" -weakdeps = ["CUDA"] +version = "0.16.7" [deps.EvoTrees.extensions] EvoTreesCUDAExt = "CUDA" + [deps.EvoTrees.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + [[deps.ExceptionUnwrapping]] deps = ["Test"] git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" @@ -682,11 +660,6 @@ git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.5.0+0" -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - [[deps.Extents]] git-tree-sha1 = "2140cd04483da90b2da7f99b2add0750504fc39c" uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910" @@ -734,17 +707,11 @@ git-tree-sha1 = "656f7a6859be8673bf1f35da5670246b923964f7" uuid = "b9860ae5-e623-471e-878b-f6a53c775ea6" version = "0.1.1" -[[deps.Fetch]] -deps = ["Base64", "HTTP", "JSON3", "Random", "StructTypes", "p7zip_jll"] -git-tree-sha1 = "781292162fd5bfe8d001210f9dddbb6baa509bf4" -uuid = "bb354801-46f6-40b6-9c3d-d42d7a74c775" -version = "0.1.4" - [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "c5c28c245101bd59154f649e19b038d15901b5dc" +git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.2" +version = "1.16.3" [[deps.FilePathsBase]] deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] @@ -756,10 +723,10 @@ version = "0.9.21" uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" +deps = ["LinearAlgebra"] +git-tree-sha1 = "57f08d5665e76397e96b168f9acc12ab17c84a68" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.9.3" +version = "1.10.2" weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -769,9 +736,9 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "bc0c5092d6caaea112d3c8e3b238d61563c58d5f" +git-tree-sha1 = "2de436b72c3422940cbe1367611d137008af7ec3" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.23.0" +version = "2.23.1" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -790,18 +757,22 @@ uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.4" [[deps.Flux]] -deps = ["Adapt", "CUDA", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "NNlibCUDA", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote", "cuDNN"] -git-tree-sha1 = "3e2c3704c2173ab4b1935362384ca878b53d4c34" +deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] +git-tree-sha1 = "a5475163b611812d073171583982c42ea48d22b0" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.13.17" +version = "0.14.15" [deps.Flux.extensions] - AMDGPUExt = "AMDGPU" + FluxAMDGPUExt = "AMDGPU" + FluxCUDAExt = "CUDA" + FluxCUDAcuDNNExt = ["CUDA", "cuDNN"] FluxMetalExt = "Metal" [deps.Flux.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] @@ -816,9 +787,9 @@ uuid = "9dda63f9-cce7-5873-89fa-eccbb2fffcde" version = "0.0.3" [[deps.Format]] -git-tree-sha1 = "f3cf88025f6d03c194d73f5d13fee9004a108329" +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" -version = "1.3.6" +version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -842,16 +813,11 @@ git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.10+0" -[[deps.FuncPipelines]] -git-tree-sha1 = "6484a27c35ecc680948c7dc7435c97f12c2bfaf7" -uuid = "9ed96fbb-10b6-44d4-99a6-7e2a3dc8861b" -version = "0.2.3" - [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "8ae30e786837ce0a24f5e2186938bf3251ab94b2" +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.8" +version = "0.4.10" [[deps.Future]] deps = ["Random"] @@ -863,29 +829,17 @@ git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" version = "3.3.9+0" -[[deps.GLM]] -deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] -git-tree-sha1 = "273bd1cd30768a2fddfa3fd63bbc746ed7249e5f" -uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -version = "1.9.0" - [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "2e57b4a4f9cc15e85a24d603256fe08e527f48d1" +git-tree-sha1 = "68e8ff56a4a355a85d2784b94614491f8c900cde" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.8.1" +version = "10.1.0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GPUCompiler]] -deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "72b2e3c2ba583d1a7aa35129e56cf92e07c083e3" -uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.21.4" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] @@ -907,9 +861,9 @@ version = "0.6.2" [[deps.GeoInterface]] deps = ["Extents"] -git-tree-sha1 = "d4f85701f569584f2cff7ba67a137d03f0cfb7d0" +git-tree-sha1 = "801aef8228f7f04972e596b09d4dba481807c913" uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f" -version = "1.3.3" +version = "1.3.4" [[deps.GeometryBasics]] deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] @@ -937,9 +891,9 @@ version = "1.3.1" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "12945451c5d0e2d0dca0724c3a8d6448b46bbdf9" +git-tree-sha1 = "d18fb8a1f3609361ebda9bf029b60fd0f120c809" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.44.0+1" +version = "2.44.0+2" [[deps.Glib_jll]] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -966,9 +920,9 @@ version = "1.3.14+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7" +git-tree-sha1 = "3863330da5466410782f2bffc64f3d505a6a8334" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.9.0" +version = "1.10.0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -976,10 +930,16 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[deps.HDF5]] -deps = ["Compat", "HDF5_jll", "Libdl", "Mmap", "Printf", "Random", "Requires", "UUIDs"] -git-tree-sha1 = "114e20044677badbc631ee6fdc80a67920561a29" +deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] +git-tree-sha1 = "e856eef26cf5bf2b0f95f8f4fc37553c72c8641c" uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f" -version = "0.16.16" +version = "0.17.2" + + [deps.HDF5.extensions] + MPIExt = "MPI" + + [deps.HDF5.weakdeps] + MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" [[deps.HDF5_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] @@ -987,17 +947,11 @@ git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" version = "1.14.2+1" -[[deps.HTML_Entities]] -deps = ["StrTables"] -git-tree-sha1 = "c4144ed3bc5f67f595622ad03c0e39fa6c70ccc7" -uuid = "7693890a-d069-55fe-a829-b4a6d304f0ee" -version = "1.0.1" - [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "db864f2d91f68a5912937af80327d288ea1f3aee" +git-tree-sha1 = "2c3ec1f90bb4a8f7beafb0cffea8a4c3f4e636ab" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.3" +version = "1.10.6" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -1005,18 +959,18 @@ git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" version = "2.8.1+1" +[[deps.HistogramThresholding]] +deps = ["ImageBase", "LinearAlgebra", "MappedArrays"] +git-tree-sha1 = "7194dfbb2f8d945abdaf68fa9480a965d6661e69" +uuid = "2c695a8d-9458-5d45-9878-1b8a99cf7853" +version = "0.3.1" + [[deps.HostCPUFeatures]] deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2" uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" version = "0.1.16" -[[deps.HuggingFaceApi]] -deps = ["Dates", "Downloads", "JSON3", "LibGit2", "OhMyArtifacts", "Pkg", "SHA"] -git-tree-sha1 = "bcf9b0ee12839d9bbee389ec13cd926845a2d39f" -uuid = "3cc741c3-0c9d-4fbe-84fa-cdec264173de" -version = "0.1.0" - [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "ca0f6bf568b4bfc807e7537f081c81e35ceca114" @@ -1049,9 +1003,9 @@ version = "0.2.4" [[deps.IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "5d8c5713f38f7bc029e26627b687710ba406d0dd" +git-tree-sha1 = "d05027a62b4c9a2223820a9fdeae1110ad3946a5" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.12" +version = "0.4.13" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -1070,6 +1024,12 @@ git-tree-sha1 = "b51bb8cae22c66d0f6357e3bcb6363145ef20835" uuid = "c817782e-172a-44cc-b673-b171935fbb9e" version = "0.1.5" +[[deps.ImageBinarization]] +deps = ["HistogramThresholding", "ImageCore", "LinearAlgebra", "Polynomials", "Reexport", "Statistics"] +git-tree-sha1 = "f5356e7203c4a9954962e3757c08033f2efe578a" +uuid = "cbc4b850-ae4b-5111-9e64-df94c024a13d" +version = "0.3.0" + [[deps.ImageContrastAdjustment]] deps = ["ImageBase", "ImageCore", "ImageTransformations", "Parameters"] git-tree-sha1 = "eb3d4365a10e3f3ecb3b115e9d12db131d28a386" @@ -1082,6 +1042,12 @@ git-tree-sha1 = "acf614720ef026d38400b3817614c45882d75500" uuid = "a09fc81d-aa75-5fe9-8630-4744c3626534" version = "0.9.4" +[[deps.ImageCorners]] +deps = ["ImageCore", "ImageFiltering", "PrecompileTools", "StaticArrays", "StatsBase"] +git-tree-sha1 = "24c52de051293745a9bad7d73497708954562b79" +uuid = "89d5987c-236e-4e32-acd0-25bd6bd87b70" +version = "0.1.3" + [[deps.ImageDistances]] deps = ["Distances", "ImageCore", "ImageMorphology", "LinearAlgebra", "Statistics"] git-tree-sha1 = "08b0e6354b21ef5dd5e49026028e41831401aca8" @@ -1119,10 +1085,10 @@ uuid = "bc367c6b-8a6b-528e-b4bd-a4b897500b49" version = "0.9.9" [[deps.ImageMorphology]] -deps = ["ImageCore", "LinearAlgebra", "Requires", "TiledIteration"] -git-tree-sha1 = "e7c68ab3df4a75511ba33fc5d8d9098007b579a8" +deps = ["DataStructures", "ImageCore", "LinearAlgebra", "LoopVectorization", "OffsetArrays", "Requires", "TiledIteration"] +git-tree-sha1 = "6f0a801136cb9c229aebea0df296cdcd471dbcd1" uuid = "787d08f9-d448-5407-9aad-5290dd7ab264" -version = "0.3.2" +version = "0.4.5" [[deps.ImageQualityIndexes]] deps = ["ImageContrastAdjustment", "ImageCore", "ImageDistances", "ImageFiltering", "LazyModules", "OffsetArrays", "PrecompileTools", "Statistics"] @@ -1143,16 +1109,16 @@ uuid = "4e3cecfd-b093-5904-9786-8bbb286a6a31" version = "0.3.8" [[deps.ImageTransformations]] -deps = ["AxisAlgorithms", "ColorVectorSpace", "CoordinateTransformations", "ImageBase", "ImageCore", "Interpolations", "OffsetArrays", "Rotations", "StaticArrays"] -git-tree-sha1 = "8717482f4a2108c9358e5c3ca903d3a6113badc9" +deps = ["AxisAlgorithms", "CoordinateTransformations", "ImageBase", "ImageCore", "Interpolations", "OffsetArrays", "Rotations", "StaticArrays"] +git-tree-sha1 = "e0884bdf01bbbb111aea77c348368a86fb4b5ab6" uuid = "02fcd773-0e25-5acc-982a-7f6622650795" -version = "0.9.5" +version = "0.10.1" [[deps.Images]] -deps = ["Base64", "FileIO", "Graphics", "ImageAxes", "ImageBase", "ImageContrastAdjustment", "ImageCore", "ImageDistances", "ImageFiltering", "ImageIO", "ImageMagick", "ImageMetadata", "ImageMorphology", "ImageQualityIndexes", "ImageSegmentation", "ImageShow", "ImageTransformations", "IndirectArrays", "IntegralArrays", "Random", "Reexport", "SparseArrays", "StaticArrays", "Statistics", "StatsBase", "TiledIteration"] -git-tree-sha1 = "5fa9f92e1e2918d9d1243b1131abe623cdf98be7" +deps = ["Base64", "FileIO", "Graphics", "ImageAxes", "ImageBase", "ImageBinarization", "ImageContrastAdjustment", "ImageCore", "ImageCorners", "ImageDistances", "ImageFiltering", "ImageIO", "ImageMagick", "ImageMetadata", "ImageMorphology", "ImageQualityIndexes", "ImageSegmentation", "ImageShow", "ImageTransformations", "IndirectArrays", "IntegralArrays", "Random", "Reexport", "SparseArrays", "StaticArrays", "Statistics", "StatsBase", "TiledIteration"] +git-tree-sha1 = "12fdd617c7fe25dc4a6cc804d657cc4b2230302b" uuid = "916415d5-f1e6-5110-898d-aaa5f9f070e0" -version = "0.25.3" +version = "0.26.1" [[deps.Imath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1201,9 +1167,9 @@ version = "0.1.5" [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.0.2+0" +version = "2024.1.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -1217,9 +1183,13 @@ version = "0.7.0" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" @@ -1234,9 +1204,13 @@ weakdeps = ["Random", "RecipesBase", "Statistics"] [[deps.InverseFunctions]] deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" [[deps.InvertedIndices]] git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" @@ -1356,9 +1330,9 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.6.0" +version = "6.6.3" weakdeps = ["BFloat16s"] [deps.LLVM.extensions] @@ -1376,15 +1350,6 @@ git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "15.0.7+0" -[[deps.LRUCache]] -git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.6.1" -weakdeps = ["Serialization"] - - [deps.LRUCache.extensions] - SerializationExt = ["Serialization"] - [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" @@ -1397,16 +1362,16 @@ uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.3.1" [[deps.LaplaceRedux]] -deps = ["Compat", "ComputationalResources", "Flux", "LinearAlgebra", "MLJFlux", "MLJModelInterface", "MLUtils", "Parameters", "ProgressMeter", "Random", "Statistics", "Tables", "Tullio", "Zygote", "cuDNN"] -git-tree-sha1 = "28b08415d15f8cad6bc2935203a3f99f00f5195a" +deps = ["ChainRulesCore", "Compat", "ComputationalResources", "Flux", "LinearAlgebra", "MLJFlux", "MLJModelInterface", "MLUtils", "ProgressMeter", "Random", "Statistics", "Tables", "Tullio", "Zygote"] +git-tree-sha1 = "cafb1c89f8105b56b913b23a20cd897fe91aca85" uuid = "c52c1a26-f7c5-402b-80be-ba1e638ad478" -version = "0.1.4" +version = "0.2.0" [[deps.Latexify]] deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] -git-tree-sha1 = "cad560042a7cc108f5a4c24ea1431a9221f22c1b" +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.2" +version = "0.16.3" [deps.Latexify.extensions] DataFramesExt = "DataFrames" @@ -1482,10 +1447,10 @@ uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" version = "3.2.2+1" [[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" +version = "1.8.11+0" [[deps.Libglvnd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] @@ -1525,15 +1490,9 @@ version = "2.39.3+1" [[deps.LightGBM]] deps = ["Dates", "Libdl", "MLJModelInterface", "SparseArrays", "Statistics"] -git-tree-sha1 = "ce5f0bbb93610549e94dc1b1d6a1e238ae021d7d" +git-tree-sha1 = "3266e7eab1ef894999a4f42f8f0b1e2131668a21" uuid = "7acf609c-83a4-11e9-1ffb-b912bcd3b04a" -version = "0.6.1" - -[[deps.LightXML]] -deps = ["Libdl", "XML2_jll"] -git-tree-sha1 = "3a994404d3f6709610701c7dabfc03fed87a81f8" -uuid = "9c8b4983-aa76-5018-a973-4c85ecc9e179" -version = "0.9.1" +version = "0.6.2" [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] @@ -1590,9 +1549,9 @@ version = "1.0.3" [[deps.LoopVectorization]] deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "0f5648fbae0d015e3abe5867bca2b362f67a5894" +git-tree-sha1 = "a13f3be5d84b9c95465d743c82af0b094ef9c2e2" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.166" +version = "0.12.169" weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [deps.LoopVectorization.extensions] @@ -1621,10 +1580,10 @@ uuid = "6c6e2e6c-3030-632d-7369-2d6c69616d65" version = "0.1.4" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] -git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2024.0.0+0" +version = "2024.1.0+0" [[deps.MLDatasets]] deps = ["CSV", "Chemfiles", "DataDeps", "DataFrames", "DelimitedFiles", "FileIO", "FixedPointNumbers", "GZip", "Glob", "HDF5", "ImageShow", "JLD2", "JSON3", "LazyModules", "MAT", "MLUtils", "NPZ", "Pickle", "Printf", "Requires", "SparseArrays", "Statistics", "Tables"] @@ -1634,21 +1593,27 @@ version = "0.7.14" [[deps.MLFlowClient]] deps = ["Dates", "FilePathsBase", "HTTP", "JSON", "ShowCases", "URIs", "UUIDs"] -git-tree-sha1 = "049b39a208b052d020e18a0850ca9d228a11ef16" +git-tree-sha1 = "5cc2a5453856e79f4772269fbe6b19fcdcba391a" uuid = "64a0f543-368b-4a9a-827a-e71edb2a0b83" -version = "0.4.6" +version = "0.4.7" [[deps.MLJ]] -deps = ["CategoricalArrays", "ComputationalResources", "Distributed", "Distributions", "LinearAlgebra", "MLJBase", "MLJEnsembles", "MLJFlow", "MLJIteration", "MLJModels", "MLJTuning", "OpenML", "Pkg", "ProgressMeter", "Random", "Reexport", "ScientificTypes", "StatisticalMeasures", "Statistics", "StatsBase", "Tables"] -git-tree-sha1 = "58d17a367ee211ade6e53f83a9cc5adf9d26f833" +deps = ["CategoricalArrays", "ComputationalResources", "Distributed", "Distributions", "LinearAlgebra", "MLJBalancing", "MLJBase", "MLJEnsembles", "MLJFlow", "MLJIteration", "MLJModels", "MLJTuning", "OpenML", "Pkg", "ProgressMeter", "Random", "Reexport", "ScientificTypes", "StatisticalMeasures", "Statistics", "StatsBase", "Tables"] +git-tree-sha1 = "a49aa31103f78b4c13e8d6beb13c5091cce82303" uuid = "add582a8-e3ab-11e8-2d5e-e98b27df1bc7" -version = "0.20.0" +version = "0.20.3" + +[[deps.MLJBalancing]] +deps = ["MLJBase", "MLJModelInterface", "MLUtils", "OrderedCollections", "Random", "StatsBase"] +git-tree-sha1 = "f02e28f9f3c54a138db12a97a5d823e5e572c2d6" +uuid = "45f359ea-796d-4f51-95a5-deb1a414c586" +version = "0.1.4" [[deps.MLJBase]] deps = ["CategoricalArrays", "CategoricalDistributions", "ComputationalResources", "Dates", "DelimitedFiles", "Distributed", "Distributions", "InteractiveUtils", "InvertedIndices", "LearnAPI", "LinearAlgebra", "MLJModelInterface", "Missings", "OrderedCollections", "Parameters", "PrettyTables", "ProgressMeter", "Random", "RecipesBase", "Reexport", "ScientificTypes", "Serialization", "StatisticalMeasuresBase", "StatisticalTraits", "Statistics", "StatsBase", "Tables"] -git-tree-sha1 = "f4782ed751d4683a2858278ef2997130a82ca710" +git-tree-sha1 = "17d160e8f796ab5ceb4c017bc4019d21fd686a35" uuid = "a7f614a8-145f-11e9-1d2a-a57a1082229d" -version = "1.1.2" +version = "1.2.1" weakdeps = ["StatisticalMeasures"] [deps.MLJBase.extensions] @@ -1656,33 +1621,27 @@ weakdeps = ["StatisticalMeasures"] [[deps.MLJDecisionTreeInterface]] deps = ["CategoricalArrays", "DecisionTree", "MLJModelInterface", "Random", "Tables"] -git-tree-sha1 = "1330eb4b8560bcc53d3878a2c9a08c75f99d530d" +git-tree-sha1 = "90ef4d3b6cacec631c57cc034e1e61b4aa0ce511" uuid = "c6f25543-311c-4c74-83dc-3ea6d1015661" -version = "0.4.1" +version = "0.4.2" [[deps.MLJEnsembles]] deps = ["CategoricalArrays", "CategoricalDistributions", "ComputationalResources", "Distributed", "Distributions", "MLJModelInterface", "ProgressMeter", "Random", "ScientificTypesBase", "StatisticalMeasuresBase", "StatsBase"] -git-tree-sha1 = "94403b2c8f692011df6731913376e0e37f6c0fe9" +git-tree-sha1 = "456d99c46a9eab977308122c829c52dfa1677c03" uuid = "50ed68f4-41fd-4504-931a-ed422449fee0" -version = "0.4.0" +version = "0.4.1" [[deps.MLJFlow]] deps = ["MLFlowClient", "MLJBase", "MLJModelInterface"] -git-tree-sha1 = "dc0de70a794c6d4c1aa4bde8196770c6b6e6b550" +git-tree-sha1 = "79989f284c1f6c39eef70f6c8a39736e4f8d3d02" uuid = "7b7b8358-b45c-48ea-a8ef-7ca328ad328f" -version = "0.2.0" +version = "0.4.1" [[deps.MLJFlux]] deps = ["CategoricalArrays", "ColorTypes", "ComputationalResources", "Flux", "MLJModelInterface", "Metalhead", "ProgressMeter", "Random", "Statistics", "Tables"] -git-tree-sha1 = "40f9e99a6770bc795f70f1908316e1491488a7b7" +git-tree-sha1 = "72935b7de07a7f6b72fd49ecc7898dac79248d46" uuid = "094fc8d1-fd35-5302-93ea-dabda2abf845" -version = "0.3.1" - -[[deps.MLJGLMInterface]] -deps = ["Distributions", "GLM", "MLJModelInterface", "StatsModels", "Tables"] -git-tree-sha1 = "db318813a5f07e3f93a1e530c8fd0e6bdc9cabac" -uuid = "caf8df21-4939-456d-ac9c-5fefbfb04c0c" -version = "0.3.7" +version = "0.4.0" [[deps.MLJIteration]] deps = ["IterationControl", "MLJBase", "Random", "Serialization"] @@ -1698,33 +1657,21 @@ version = "0.10.0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.5" +version = "1.9.6" [[deps.MLJModels]] deps = ["CategoricalArrays", "CategoricalDistributions", "Combinatorics", "Dates", "Distances", "Distributions", "InteractiveUtils", "LinearAlgebra", "MLJModelInterface", "Markdown", "OrderedCollections", "Parameters", "Pkg", "PrettyPrinting", "REPL", "Random", "RelocatableFolders", "ScientificTypes", "StatisticalTraits", "Statistics", "StatsBase", "Tables"] -git-tree-sha1 = "dd99a80f39cae8b112823d279dfa08ae872b4f3e" +git-tree-sha1 = "410da88e0e6ece5467293d2c76b51b7c6df7d072" uuid = "d491faf4-2d78-11e9-2867-c94bc002c0b7" -version = "0.16.16" - -[[deps.MLJMultivariateStatsInterface]] -deps = ["Distances", "LinearAlgebra", "MLJModelInterface", "MultivariateStats", "StatsBase"] -git-tree-sha1 = "a282960828015daf766b4d66ba75445b0c909099" -uuid = "1b6a4a23-ba22-4f51-9698-8599985d3728" -version = "0.4.0" - -[[deps.MLJNaiveBayesInterface]] -deps = ["LogExpFunctions", "MLJModelInterface", "NaiveBayes"] -git-tree-sha1 = "65c8eb0f1da7380f1660201c7ca14d085602ad90" -uuid = "33e4bacb-b9e2-458e-9a13-5d9a90b235fa" -version = "0.1.6" +version = "0.16.17" [[deps.MLJTuning]] deps = ["ComputationalResources", "Distributed", "Distributions", "LatinHypercubeSampling", "MLJBase", "ProgressMeter", "Random", "RecipesBase", "StatisticalMeasuresBase"] -git-tree-sha1 = "42949f1a85c48f390cfce46cb1c4fcda1846b204" +git-tree-sha1 = "4a2c14b9529753db3ece53fd635c609220200507" uuid = "03970b2e-30c4-11ea-3135-d1576263f10f" -version = "0.8.2" +version = "0.8.4" [[deps.MLStyle]] git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" @@ -1739,9 +1686,9 @@ version = "0.4.4" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "656036b9ed6f942d35e536e249600bc31d0f9df8" +git-tree-sha1 = "d8a7bf80c88326ebc98b7d38437208c3a0f20725" uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" -version = "4.2.0+0" +version = "4.2.1+0" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] @@ -1750,10 +1697,10 @@ uuid = "3da0fdf6-3ccc-4f1b-acd9-58baa6c99267" version = "0.1.10" [[deps.MPItrampoline_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "77c3bd69fdb024d75af38713e883d0f249ce19c2" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] +git-tree-sha1 = "3f884417b47a96d87e7c6219f8f7b30ce67f4f2c" uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748" -version = "5.3.2+0" +version = "5.3.3+0" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1761,12 +1708,6 @@ git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.13" -[[deps.ManifoldLearning]] -deps = ["Combinatorics", "Graphs", "LinearAlgebra", "MultivariateStats", "Random", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "4c5564c707899c3b6bc6d324b05e43eb7f277f2b" -uuid = "06eb3307-b2af-5a2a-abea-d33192699d32" -version = "0.9.0" - [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" @@ -1816,10 +1757,16 @@ uuid = "626554b9-1ddb-594c-aa3c-2596fe9399a5" version = "0.7.2" [[deps.Metalhead]] -deps = ["Artifacts", "BSON", "CUDA", "ChainRulesCore", "Flux", "Functors", "JLD2", "LazyArtifacts", "MLUtils", "NNlib", "PartialFunctions", "Random", "Statistics"] -git-tree-sha1 = "4bbdb628c60c5f473148292df3ecb87058ba515f" +deps = ["Artifacts", "BSON", "ChainRulesCore", "Flux", "Functors", "JLD2", "LazyArtifacts", "MLUtils", "NNlib", "PartialFunctions", "Random", "Statistics"] +git-tree-sha1 = "5aac9a2b511afda7bf89df5044a2e0b429f83152" uuid = "dbeba491-748d-5e0e-a39e-b530a07fa0cc" -version = "0.8.3" +version = "0.9.3" + + [deps.Metalhead.extensions] + MetalheadCUDAExt = "CUDA" + + [deps.Metalhead.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" [[deps.MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] @@ -1835,9 +1782,9 @@ version = "10.1.4+2" [[deps.Missings]] deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" +version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" @@ -1853,10 +1800,10 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" version = "2023.1.10" [[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "6d019f5a0465522bbfdd68ecfad7f86b535d6935" +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.9.0" +version = "0.10.2" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1866,21 +1813,21 @@ version = "7.8.3" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "72240e3f5ca031937bd536182cb2c031da5f46dd" +git-tree-sha1 = "5055845dd316575ae2fc1f6dcb3545ff15fe547a" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.21" +version = "0.9.14" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" [deps.NNlib.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - -[[deps.NNlibCUDA]] -deps = ["Adapt", "CUDA", "LinearAlgebra", "NNlib", "Random", "Statistics", "cuDNN"] -git-tree-sha1 = "f94a9684394ff0d325cc12b06da7032d8be01aaf" -uuid = "a00861dc-f156-4864-bf3c-e6376f28a68d" -version = "0.2.7" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" [[deps.NPZ]] deps = ["FileIO", "ZipFile"] @@ -1894,12 +1841,6 @@ git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.2" -[[deps.NaiveBayes]] -deps = ["Distributions", "HDF5", "Interpolations", "KernelDensity", "LinearAlgebra", "Random", "SparseArrays", "StatsBase"] -git-tree-sha1 = "3e8f66cad75d84820bf146ad3ae3785836497258" -uuid = "9bbee03b-0db5-5f46-924f-b5c9c21b8c60" -version = "0.5.5" - [[deps.NameResolution]] deps = ["PrettyPrint"] git-tree-sha1 = "1a0fa0e9613f46c9b8c11eee38ebb4f590013c5e" @@ -1943,21 +1884,15 @@ weakdeps = ["Graphs"] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" -[[deps.NeuralAttentionlib]] -deps = ["Adapt", "CUDA", "ChainRulesCore", "GPUArrays", "GPUArraysCore", "LinearAlgebra", "NNlib", "NNlibCUDA", "Requires", "Static"] -git-tree-sha1 = "a87d94adcbcb0598c147d09b43dce830bc27baaa" -uuid = "12afc1b8-fad6-47e1-9132-84abc478905f" -version = "0.2.12" - [[deps.Observables]] git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" version = "0.5.5" [[deps.OffsetArrays]] -git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.13.0" +version = "1.14.0" weakdeps = ["Adapt"] [deps.OffsetArrays.extensions] @@ -1969,12 +1904,6 @@ git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" version = "1.3.5+1" -[[deps.OhMyArtifacts]] -deps = ["Dates", "Downloads", "Pidfile", "Pkg", "Printf", "SHA", "Scratch", "TOML"] -git-tree-sha1 = "1ae208c3919548b9e7e6783ba294289cd204b4cb" -uuid = "cf8be1f4-309d-442e-839d-29d2a0af6cb7" -version = "0.3.1" - [[deps.OneHotArrays]] deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] git-tree-sha1 = "963a3f28a2e65bb87a68033ea4a616002406037d" @@ -2023,15 +1952,15 @@ version = "5.0.2+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "af81a32750ebc831ee28bdaaba6e1067decef51e" +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.2" +version = "1.4.3" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.13+0" +version = "3.0.13+1" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -2041,15 +1970,21 @@ version = "0.5.5+0" [[deps.Optim]] deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "e3a6546c1577bfd701771b477b794a52949e7594" +git-tree-sha1 = "d9b79c4eed437421ac4285148fcadf42e0700e89" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.7.6" +version = "1.9.4" + + [deps.Optim.extensions] + OptimMOIExt = "MathOptInterface" + + [deps.Optim.weakdeps] + MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "c1fc26bab5df929a5172f296f25d7d08688fd25b" +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.20" +version = "0.3.3" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2075,9 +2010,9 @@ version = "0.11.31" [[deps.PMIx_jll]] deps = ["Artifacts", "Hwloc_jll", "JLLWrappers", "Libdl", "Zlib_jll", "libevent_jll"] -git-tree-sha1 = "8b3b19351fa24791f94d7ae85faf845ca1362541" +git-tree-sha1 = "360f48126b5f2c2f0c833be960097f7c62705976" uuid = "32165bc3-0280-59bc-8c0b-c33b6203efab" -version = "4.2.7+0" +version = "4.2.9+0" [[deps.PNGFiles]] deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"] @@ -2127,12 +2062,6 @@ git-tree-sha1 = "2e71d7dbcab8dc47306c0ed6ac6018fbc1a7070f" uuid = "fbb45041-c46e-462f-888f-7c521cafbc2c" version = "0.3.3" -[[deps.Pidfile]] -deps = ["FileWatching", "Test"] -git-tree-sha1 = "2d8aaf8ee10df53d0dfb9b8ee44ae7c04ced2b03" -uuid = "fa939f87-e72e-5be4-a000-7fc836dbe307" -version = "1.3.0" - [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" @@ -2169,9 +2098,9 @@ version = "1.4.1" [[deps.Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "3c403c6590dd93b36752634115e20137e79ab4df" +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.40.2" +version = "1.40.4" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -2189,9 +2118,9 @@ version = "1.40.2" [[deps.PlutoUI]] deps = ["AbstractPlutoDingetjes", "Base64", "ColorTypes", "Dates", "FixedPointNumbers", "Hyperscript", "HypertextLiteral", "IOCapture", "InteractiveUtils", "JSON", "Logging", "MIMEs", "Markdown", "Random", "Reexport", "URIs", "UUIDs"] -git-tree-sha1 = "71a22244e352aa8c5f0f2adde4150f62368a3f2e" +git-tree-sha1 = "ab55ee1510ad2af0ff674dbcced5e94921f867a9" uuid = "7f904dfe-b85e-4ff6-b463-dae2292396a8" -version = "0.7.58" +version = "0.7.59" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -2200,20 +2129,18 @@ uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" version = "0.2.1" [[deps.Polynomials]] -deps = ["LinearAlgebra", "RecipesBase", "Setfield", "SparseArrays"] -git-tree-sha1 = "a9c7a523d5ed375be3983db190f6a5874ae9286d" +deps = ["LinearAlgebra", "RecipesBase"] +git-tree-sha1 = "3aa2bb4982e575acd7583f01531f241af077b163" uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" -version = "4.0.6" +version = "3.2.13" [deps.Polynomials.extensions] PolynomialsChainRulesCoreExt = "ChainRulesCore" - PolynomialsFFTWExt = "FFTW" PolynomialsMakieCoreExt = "MakieCore" PolynomialsMutableArithmeticsExt = "MutableArithmetics" [deps.Polynomials.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" MakieCore = "20f20a25-4f0e-4fdf-b5d1-57303727442b" MutableArithmetics = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" @@ -2257,12 +2184,6 @@ git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" version = "2.3.1" -[[deps.PrimitiveOneHot]] -deps = ["Adapt", "ChainRulesCore", "NNlib", "Requires"] -git-tree-sha1 = "679f66ad280909b4ab590e382b4da6eb45c5955f" -uuid = "13d12f88-f12b-451e-9b9f-13b97e01cc85" -version = "0.1.4" - [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" @@ -2317,18 +2238,6 @@ uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.7.0" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - [[deps.RangeArrays]] git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" @@ -2425,12 +2334,6 @@ weakdeps = ["RecipesBase"] [deps.Rotations.extensions] RotationsRecipesBaseExt = "RecipesBase" -[[deps.RustRegex]] -deps = ["rure_jll"] -git-tree-sha1 = "16be5e710d7b980678ec0d8c61d4c00e9a5591e3" -uuid = "cdf36688-0c6d-42c6-a883-5d2df16e9e88" -version = "0.1.0" - [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" @@ -2564,10 +2467,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StableRNGs]] -deps = ["Random", "Test"] -git-tree-sha1 = "ddc1a7b85e760b5285b50b882fa91e40c603be47" +deps = ["Random"] +git-tree-sha1 = "83e6cce8324d49dfaf9ef059227f91ed4441a8e5" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" -version = "1.0.1" +version = "1.0.2" [[deps.StackViews]] deps = ["OffsetArrays"] @@ -2644,9 +2547,9 @@ version = "1.7.0" [[deps.StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" +version = "0.34.3" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] @@ -2659,24 +2562,12 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" -[[deps.StatsModels]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "5cf6c4583533ee38639f73b880f35fc85f2941e0" -uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.7.3" - [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" version = "0.15.7" -[[deps.StrTables]] -deps = ["Dates"] -git-tree-sha1 = "5998faae8c6308acc25c25896562a1e66a3bb038" -uuid = "9700d1a9-a7c8-5760-9816-a99fda30bb8f" -version = "1.0.1" - [[deps.Strided]] deps = ["LinearAlgebra", "TupleTools"] git-tree-sha1 = "a7a664c91104329c88222aa20264e1a05b6ad138" @@ -2695,11 +2586,6 @@ git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" -[[deps.StringViews]] -git-tree-sha1 = "f7b06677eae2571c888fd686ba88047d8738b0e3" -uuid = "354b36f9-a18e-4713-926e-db85100087ba" -version = "1.3.3" - [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" @@ -2719,12 +2605,6 @@ git-tree-sha1 = "ca4bccb03acf9faaf4137a9abc1881ed1841aa70" uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" version = "1.10.0" -[[deps.StructWalk]] -deps = ["ConstructionBase"] -git-tree-sha1 = "ef626534f40a9d99b3dafdbd54cfe411ad86e3b8" -uuid = "31cdf514-beb7-4750-89db-dda9d2eb8d3d" -version = "0.2.1" - [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2736,9 +2616,9 @@ version = "7.2.1+1" [[deps.SymbolicRegression]] deps = ["Compat", "Dates", "Distributed", "DynamicExpressions", "DynamicQuantities", "LineSearches", "LossFunctions", "MLJModelInterface", "MacroTools", "Optim", "PackageExtensionCompat", "Pkg", "PrecompileTools", "Printf", "ProgressBars", "Random", "Reexport", "SpecialFunctions", "StatsBase", "TOML", "Tricks"] -git-tree-sha1 = "ba582361af8cced2b6d01a3de8ad0d77d322f0f0" +git-tree-sha1 = "51edd5b58b6a870854c1ae8877b7e2e9330f6a04" uuid = "8254be44-1295-4e6a-a16d-46603ac705cb" -version = "0.23.3" +version = "0.24.3" [deps.SymbolicRegression.extensions] SymbolicRegressionJSON3Ext = "JSON3" @@ -2771,11 +2651,16 @@ git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" version = "1.11.1" +[[deps.TaijaBase]] +git-tree-sha1 = "f7b57ab4a5c746d83e8883a38454839d0fab8b6f" +uuid = "10284c91-9f28-4c9a-abbf-ee43576dfff6" +version = "1.0.2" + [[deps.TaijaPlotting]] -deps = ["CategoricalArrays", "ConformalPrediction", "CounterfactualExplanations", "DataAPI", "Distributions", "Flux", "LaplaceRedux", "LinearAlgebra", "MLJBase", "MLUtils", "ManifoldLearning", "MultivariateStats", "NaturalSort", "NearestNeighborModels", "Plots"] -git-tree-sha1 = "a4ef915d36801127141afb726acd8b78be6abec7" +deps = ["CategoricalArrays", "ConformalPrediction", "CounterfactualExplanations", "DataAPI", "Distributions", "Flux", "LaplaceRedux", "LinearAlgebra", "MLJBase", "MLUtils", "MultivariateStats", "NaturalSort", "NearestNeighborModels", "Plots"] +git-tree-sha1 = "e408d0162419206852142c6a08ba72a924379065" uuid = "bd7198b4-c7d6-400c-9bab-9a24614b0240" -version = "1.0.6" +version = "1.1.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -2792,12 +2677,6 @@ version = "0.1.1" deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" -[[deps.TextEncodeBase]] -deps = ["FuncPipelines", "PartialFunctions", "PrimitiveOneHot", "RustRegex", "StaticArrays", "StructWalk", "Unicode", "WordTokenizers"] -git-tree-sha1 = "4753ea70646cb276a4db65952e59103fbc2b0576" -uuid = "f92c20c0-9f2a-4705-8116-881385faba05" -version = "0.7.0" - [[deps.ThreadingUtilities]] deps = ["ManualMemory"] git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" @@ -2817,21 +2696,15 @@ uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" version = "0.6.8" [[deps.TiledIteration]] -deps = ["OffsetArrays"] -git-tree-sha1 = "5683455224ba92ef59db72d10690690f4a8dc297" +deps = ["OffsetArrays", "StaticArrayInterface"] +git-tree-sha1 = "1176cc31e867217b06928e2f140c90bd1bc88283" uuid = "06e1c1a7-607b-532d-9fad-de7d9aa2abac" -version = "0.3.1" - -[[deps.TimerOutputs]] -deps = ["ExprTools", "Printf"] -git-tree-sha1 = "f548a9e9c490030e545f72074a41edfd0e5bcdd7" -uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.23" +version = "0.5.0" [[deps.TranscodingStreams]] -git-tree-sha1 = "3caa21522e7efac1ba21834a03734c57b4611c7e" +git-tree-sha1 = "71509f04d045ec714c4748c785a59045c3736349" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.10.4" +version = "0.10.7" weakdeps = ["Random", "Test"] [deps.TranscodingStreams.extensions] @@ -2857,12 +2730,6 @@ version = "0.4.80" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Transformers]] -deps = ["Base64", "BytePairEncoding", "CUDA", "ChainRulesCore", "DataDeps", "DataStructures", "Dates", "DelimitedFiles", "DoubleArrayTries", "Fetch", "FillArrays", "Flux", "FuncPipelines", "Functors", "HTTP", "HuggingFaceApi", "JSON3", "LRUCache", "LightXML", "LinearAlgebra", "Mmap", "NNlib", "NNlibCUDA", "NeuralAttentionlib", "Pickle", "Pkg", "PrimitiveOneHot", "Random", "SHA", "Static", "Statistics", "StringViews", "StructWalk", "TextEncodeBase", "Unicode", "ValSplit", "WordTokenizers", "Zygote"] -git-tree-sha1 = "77d831ef0b378cd59c97fd52f1b6e420c972960b" -uuid = "21ca0261-441d-5938-ace7-c90938fde4d4" -version = "0.2.8" - [[deps.Tricks]] git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" @@ -2974,17 +2841,11 @@ git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" version = "0.2.0" -[[deps.ValSplit]] -deps = ["ExprTools", "Tricks"] -git-tree-sha1 = "3e1d94627f9276c40034c80dc5ab29ac1a3b06c0" -uuid = "0625e100-946b-11ec-09cd-6328dd093154" -version = "0.1.1" - [[deps.VectorizationBase]] deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "7209df901e6ed7489fe9b7aa3e46fb788e15db85" +git-tree-sha1 = "ac377f0a248753a1b1d58bbc92a64f5a726dfb71" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.65" +version = "0.21.66" [[deps.Vulkan_Loader_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] @@ -3018,15 +2879,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.6" - -[[deps.WordTokenizers]] -deps = ["DataDeps", "HTML_Entities", "StrTables", "Unicode"] -git-tree-sha1 = "01dd4068c638da2431269f49a5964bf42ff6c9d2" -uuid = "796a5d58-b03d-544a-977e-18100b691f6e" -version = "0.5.6" +version = "1.0.0" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" @@ -3035,9 +2890,9 @@ version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.5+0" +version = "2.12.6+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -3047,9 +2902,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "31c421e5516a6248dfb22c194519e37effbf1f30" +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.6.1+0" +version = "5.4.6+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -3208,9 +3063,9 @@ version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" +version = "1.5.6+0" [[deps.Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] @@ -3234,12 +3089,6 @@ git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" version = "0.2.5" -[[deps.cuDNN]] -deps = ["CEnum", "CUDA", "CUDNN_jll"] -git-tree-sha1 = "5a1ba43303c62f4a09b0d6751422de03424ab0cd" -uuid = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" -version = "1.1.1" - [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" @@ -3334,6 +3183,12 @@ deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" version = "1.52.0+1" +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" @@ -3345,12 +3200,6 @@ git-tree-sha1 = "5adb2d7a18a30280feb66cad6f1a1dfdca2dc7b0" uuid = "eb928a42-fffd-568d-ab9c-3f5d54fc65b9" version = "3.0.2+0" -[[deps.rure_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a24449573502225e7833277f99a8e2c19801f5a7" -uuid = "2a13b4fb-3cbe-5d55-9db2-86fcb16976f1" -version = "0.2.2+0" - [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" diff --git a/docs/Project.toml b/docs/Project.toml index bf5af76..03204ab 100755 --- a/docs/Project.toml +++ b/docs/Project.toml @@ -18,20 +18,15 @@ MLJ = "add582a8-e3ab-11e8-2d5e-e98b27df1bc7" MLJBase = "a7f614a8-145f-11e9-1d2a-a57a1082229d" MLJDecisionTreeInterface = "c6f25543-311c-4c74-83dc-3ea6d1015661" MLJFlux = "094fc8d1-fd35-5302-93ea-dabda2abf845" -MLJGLMInterface = "caf8df21-4939-456d-ac9c-5fefbfb04c0c" MLJLinearModels = "6ee0df7b-362f-4a72-a706-9e79364fb692" MLJModelInterface = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -MLJMultivariateStatsInterface = "1b6a4a23-ba22-4f51-9698-8599985d3728" -MLJNaiveBayesInterface = "33e4bacb-b9e2-458e-9a13-5d9a90b235fa" MLUtils = "f1d291b0-491e-4a28-83b9-f70985020b54" Measures = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -NaiveBayes = "9bbee03b-0db5-5f46-924f-b5c9c21b8c60" NaturalSort = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" NearestNeighborModels = "636a865e-7cf4-491e-846c-de09b730eb36" PlotThemes = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" PlutoUI = "7f904dfe-b85e-4ff6-b463-dae2292396a8" -Polynomials = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" Serialization = "9e88b42a-f829-5b0c-bbe9-9e923198166b" ShiftedArrays = "1277b4bf-5013-50f5-be3d-901d8477a67a" @@ -39,5 +34,4 @@ StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" SymbolicRegression = "8254be44-1295-4e6a-a16d-46603ac705cb" TaijaPlotting = "bd7198b4-c7d6-400c-9bab-9a24614b0240" -Transformers = "21ca0261-441d-5938-ace7-c90938fde4d4" UnicodePlots = "b8865327-cd53-5732-bb35-84acbb429228"