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[PkgEval] MCMC may have a testing issue on Julia 0.4 (2014-10-08) #58

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IainNZ opened this issue Oct 8, 2014 · 1 comment
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[PkgEval] MCMC may have a testing issue on Julia 0.4 (2014-10-08) #58

IainNZ opened this issue Oct 8, 2014 · 1 comment

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@IainNZ
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IainNZ commented Oct 8, 2014

PackageEvaluator.jl is a script that runs nightly. It attempts to load all Julia packages and run their tests (if available) on both the stable version of Julia (0.3) and the nightly build of the unstable version (0.4). The results of this script are used to generate a package listing enhanced with testing results.

On Julia 0.4

  • On 2014-10-05 the testing status was Tests pass.
  • On 2014-10-08 the testing status changed to Tests fail, but package loads.

Tests pass. means that PackageEvaluator found the tests for your package, executed them, and they all passed.

Tests fail, but package loads. means that PackageEvaluator found the tests for your package, executed them, and they didn't pass. However, trying to load your package with using worked.

Special message from @IainNZ: This change may be due to breaking changes to Dict in JuliaLang/julia#8521, or the removal of deprecated syntax in JuliaLang/julia#8607.

This issue was filed because your testing status became worse. No additional issues will be filed if your package remains in this state, and no issue will be filed if it improves. If you'd like to opt-out of these status-change messages, reply to this message saying you'd like to and @IainNZ will add an exception. If you'd like to discuss PackageEvaluator.jl please file an issue at the repository. For example, your package may be untestable on the test machine due to a dependency - an exception can be added.

Test log:

>>> 'Pkg.add("MCMC")' log
INFO: Installing ArrayViews v0.4.6
INFO: Installing Distributions v0.5.4
INFO: Installing MCMC v0.0.7
INFO: Installing PDMats v0.2.4
INFO: Installing ReverseDiffSource v0.0.4
INFO: Installing StatsBase v0.6.6
INFO: Package database updated
INFO: METADATA is out-of-date a you may not have the latest version of MCMC
INFO: Use `Pkg.update()` to get the latest versions of your packages

>>> 'using MCMC' log

WARNING: deprecated syntax "(T=>Int)[]" at /home/idunning/pkgtest/.julia/v0.4/StatsBase/src/scalarstats.jl:98.
Use "Dict{T,Int}()" instead.

WARNING: deprecated syntax "(T=>Int)[]" at /home/idunning/pkgtest/.julia/v0.4/StatsBase/src/scalarstats.jl:122.
Use "Dict{T,Int}()" instead.

WARNING: deprecated syntax "(T=>Float64)[]" at /home/idunning/pkgtest/.julia/v0.4/StatsBase/src/counts.jl:162.
Use "Dict{T,Float64}()" instead.

WARNING: deprecated syntax "(T=>Int)[]" at /home/idunning/pkgtest/.julia/v0.4/StatsBase/src/counts.jl:192.
Use "Dict{T,Int}()" instead.

WARNING: deprecated syntax "(T=>W)[]" at /home/idunning/pkgtest/.julia/v0.4/StatsBase/src/counts.jl:193.
Use "Dict{T,W}()" instead.

WARNING: deprecated syntax "(T=>Int)[]" at /home/idunning/pkgtest/.julia/v0.4/StatsBase/src/misc.jl:66.
Use "Dict{T,Int}()" instead.

WARNING: deprecated syntax "(T=>Int)[]" at /home/idunning/pkgtest/.julia/v0.4/StatsBase/src/misc.jl:77.
... truncated ...
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/samplers/HMC.jl:140.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/samplers/HMC.jl:146.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/samplers/HMCDA.jl:111.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/samplers/HMCDA.jl:116.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/samplers/NUTS.jl:176.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/samplers/SMMALA.jl:103.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/samplers/SMMALA.jl:108.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/samplers/PMALA.jl:120.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/samplers/PMALA.jl:126.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/samplers/RMHMC.jl:164.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/samplers/RMHMC.jl:168.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/runners/SerialMC.jl:41.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/runners/SeqMC.jl:108.
Use "Dict{Any,Any}(a=>b, ...)" instead.
Julia Version 0.4.0-dev+998
Commit e24fac0 (2014-10-07 22:02 UTC)
Platform Info:
  System: Linux (x86_64-unknown-linux-gnu)
  CPU: Intel(R) Xeon(R) CPU E5-2650 0 @ 2.00GHz
  WORD_SIZE: 64
  BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Sandybridge)
  LAPACK: libopenblas
  LIBM: libopenlibm
  LLVM: libLLVM-3.3

>>> test log

WARNING: deprecated syntax "(T=>Int)[]" at /home/idunning/pkgtest/.julia/v0.4/StatsBase/src/scalarstats.jl:98.
Use "Dict{T,Int}()" instead.

WARNING: deprecated syntax "(T=>Int)[]" at /home/idunning/pkgtest/.julia/v0.4/StatsBase/src/scalarstats.jl:122.
Use "Dict{T,Int}()" instead.

WARNING: deprecated syntax "(T=>Float64)[]" at /home/idunning/pkgtest/.julia/v0.4/StatsBase/src/counts.jl:162.
Use "Dict{T,Float64}()" instead.

WARNING: deprecated syntax "(T=>Int)[]" at /home/idunning/pkgtest/.julia/v0.4/StatsBase/src/counts.jl:192.
Use "Dict{T,Int}()" instead.

WARNING: deprecated syntax "(T=>W)[]" at /home/idunning/pkgtest/.julia/v0.4/StatsBase/src/counts.jl:193.
Use "Dict{T,W}()" instead.

WARNING: deprecated syntax "(T=>Int)[]" at /home/idunning/pkgtest/.julia/v0.4/StatsBase/src/misc.jl:66.
Use "Dict{T,Int}()" instead.

WARNING: deprecated syntax "(T=>Int)[]" at /home/idunning/pkgtest/.julia/v0.4/StatsBase/src/misc.jl:77.
... truncated ...
WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/samplers/PMALA.jl:126.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/samplers/RMHMC.jl:164.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/samplers/RMHMC.jl:168.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/runners/SerialMC.jl:41.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/runners/SeqMC.jl:108.
Use "Dict{Any,Any}(a=>b, ...)" instead.
ERROR: `Dict{K,V}` has no method matching Dict{K,V}(::Array{Symbol,1}, ::Array{(Int64,(Int64,)),1})
 in MCMCLikelihoodModel at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/modellers/MCMCLikModel.jl:123
 in model at /home/idunning/pkgtest/.julia/v0.4/MCMC/src/modellers/models.jl:28
 in include at ./boot.jl:245
 in include_from_node1 at ./loading.jl:128
 in anonymous at no file:14
 in include at ./boot.jl:245
 in include_from_node1 at loading.jl:128
 in process_options at ./client.jl:293
 in _start at ./client.jl:362
 in _start_3B_3789 at /home/idunning/julia04/usr/bin/../lib/julia/sys.so
while loading /home/idunning/pkgtest/.julia/v0.4/MCMC/test/test_hmc.jl, in expression starting on line 23
while loading /home/idunning/pkgtest/.julia/v0.4/MCMC/test/runtests.jl, in expression starting on line 12
Running tests:
  * test_hmc.jl *
    Testing basic HMC constructors...
    Testing that HMC sampler can run...

INFO: Testing MCMC
================================[ ERROR: MCMC ]=================================

failed process: Process(`/home/idunning/julia04/usr/bin/julia /home/idunning/pkgtest/.julia/v0.4/MCMC/test/runtests.jl`, ProcessExited(1)) [1]

================================================================================
INFO: No packages to install, update or remove
ERROR: MCMC had test errors
 in error at error.jl:21
 in test at pkg/entry.jl:719
 in anonymous at pkg/dir.jl:28
 in cd at ./file.jl:20
 in cd at pkg/dir.jl:28
 in test at pkg.jl:68
 in process_options at ./client.jl:221
 in _start at ./client.jl:362
 in _start_3B_3789 at /home/idunning/julia04/usr/bin/../lib/julia/sys.so


>>> end of log
@papamarkou
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This old issue is fixed by now, will close it.

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@IainNZ @papamarkou