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[BUG] Plots 1.5 segfaults #2825

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floswald opened this issue Jun 30, 2020 · 3 comments
Closed

[BUG] Plots 1.5 segfaults #2825

floswald opened this issue Jun 30, 2020 · 3 comments
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bug

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@floswald
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my lastest plots version 1.5.0 segfaults:

               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.4.2 (2020-05-23)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

(@v1.4) pkg> st
Status `~/.julia/environments/v1.4/Project.toml`
  [c52e3926] Atom v0.12.15
  [28b8d3ca] GR v0.50.1
  [e5e0dc1b] Juno v0.8.2
  [91a5bcdd] Plots v1.5.0
  [c3e4b0f8] Pluto v0.9.10
  [0f1e0344] WebIO v0.8.14

julia> using Plots
[ Info: Precompiling Plots [91a5bcdd-55d7-5caf-9e0b-520d859cae80]

julia> plot(plot(1:10),plot(rand(10).*0.01),plot(1:10),plot(1:10),l=(2,2),link = :x)
2020-06-30 11:06:26.158 julia[45505:2183362] *** Terminating app due to uncaught exception 'GKSTermHasDiedException', reason: 'The connection to GKSTerm has timed out.'
*** First throw call stack:
(
	0   CoreFoundation                      0x00007fff31362be7 __exceptionPreprocess + 250
	1   libobjc.A.dylib                     0x00007fff6a13a5bf objc_exception_throw + 48
	2   quartzplugin.so                     0x000000013a64fc4e gksterm_communicate + 958
	3   quartzplugin.so                     0x000000013a64f77d gks_quartzplugin + 2221
	4   libGR.so                            0x000000013a39137a gks_ddlk + 1418
	5   libGR.so                            0x000000013a392778 gks_update_ws + 136
	6   libGR.so                            0x000000013a31410d gr_updatews + 205
	7   ???                                 0x00000001263f6273 0x0 + 4936655475
	8   ???                                 0x00000001263f67ac 0x0 + 4936656812
	9   ???                                 0x000000012643e08b 0x0 + 4936949899
	10  libjulia.1.4.dylib                  0x0000000108994a59 do_apply + 3289
	11  libjulia.1.4.dylib                  0x0000000108994d16 jl_f__apply_latest + 70
	12  sys.dylib                           0x000000010d0dc42e julia_print_response_16623.clone_1.clone_2 + 1582
	13  sys.dylib                           0x000000010d1e598f julia_print_response_16629.clone_1.clone_2 + 479
	14  sys.dylib                           0x000000010cbf30af jfptr_print_response_16630.clone_1 + 31
	15  ???                                 0x00000001263e32e4 0x0 + 4936577764
	16  libjulia.1.4.dylib                  0x0000000108994d16 jl_f__apply_latest + 70
	17  sys.dylib                           0x000000010d0d0145 japi1_run_interface_16349.clone_1.clone_2 + 1525
	18  sys.dylib                           0x000000010cbf47b4 japi1_run_frontend_16677.clone_1 + 500
	19  sys.dylib                           0x000000010cbf572d japi1_run_repl_16684.clone_1 + 1693
	20  sys.dylib                           0x000000010c9c9cd5 julia_#764_8193.clone_1 + 1525
	21  sys.dylib                           0x000000010c9ca2a9 jfptr_#764_8194.clone_1 + 9
	22  libjulia.1.4.dylib                  0x0000000108994d16 jl_f__apply_latest + 70
	23  sys.dylib                           0x000000010cebd998 julia_run_main_repl_3736.clone_1.clone_2 + 1272
	24  sys.dylib                           0x000000010cec3ae8 julia_exec_options_2121.clone_1.clone_2 + 15192
	25  sys.dylib                           0x000000010c8cdf80 julia__start_2074.clone_1 + 656
)
libc++abi.dylib: terminating with uncaught exception of type NSException

signal (6): Abort trap: 6
in expression starting at REPL[3]:0
__pthread_kill at /usr/lib/system/libsystem_kernel.dylib (unknown line)
Allocations: 38877987 (Pool: 38870015; Big: 7972); GC: 35
[1]    45505 abort      julia

Backends

This bug occurs on ( insert x below )

Backend yes no untested
gr (default) x
pyplot x
plotly x
plotlyjs x
pgfplotsx x
inspectdr x

Versions

Plots.jl version:
Backend version (]st -m):

(@v1.4) pkg> st -m
Status `~/.julia/environments/v1.4/Manifest.toml`
  [1520ce14] AbstractTrees v0.3.3
  [79e6a3ab] Adapt v2.0.2
  [bf4720bc] AssetRegistry v0.1.0
  [c52e3926] Atom v0.12.15
  [6e34b625] Bzip2_jll v1.0.6+2
  [00ebfdb7] CSTParser v2.4.0
  [53a63b46] CodeTools v0.7.0
  [da1fd8a2] CodeTracking v1.0.0
  [35d6a980] ColorSchemes v3.9.0
  [3da002f7] ColorTypes v0.10.4
  [5ae59095] Colors v0.12.2
  [34da2185] Compat v3.12.0
  [d38c429a] Contour v0.5.3
  [9a962f9c] DataAPI v1.3.0
  [864edb3b] DataStructures v0.17.18
  [e2d170a0] DataValueInterfaces v1.0.0
  [b4f34e82] Distances v0.9.0
  [33d173f1] DocSeeker v0.4.1
  [c87230d0] FFMPEG v0.3.0
  [b22a6f82] FFMPEG_jll v4.1.0+3
  [5789e2e9] FileIO v1.3.0
  [53c48c17] FixedPointNumbers v0.8.1
  [08572546] FlameGraphs v0.2.3
  [d7e528f0] FreeType2_jll v2.10.1+2
  [559328eb] FriBidi_jll v1.0.5+3
  [de31a74c] FunctionalCollections v0.5.0
  [fb4132e2] FuzzyCompletions v0.2.0
  [28b8d3ca] GR v0.50.1
  [5c1252a2] GeometryBasics v0.2.14
  [4d00f742] GeometryTypes v0.8.3
  [cd3eb016] HTTP v0.8.15
  [9fb69e20] Hiccup v0.2.2
  [9b13fd28] IndirectArrays v0.5.1
  [83e8ac13] IniFile v0.5.0
  [c8e1da08] IterTools v1.3.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [98e50ef6] JuliaFormatter v0.6.5
  [aa1ae85d] JuliaInterpreter v0.7.23
  [e5e0dc1b] Juno v0.8.2
  [c1c5ebd0] LAME_jll v3.100.0+1
  [7c4cb9fa] LNR v0.2.1
  [50d2b5c4] Lazy v0.15.0
  [1d6d02ad] LeftChildRightSiblingTrees v0.1.2
  [dd192d2f] LibVPX_jll v1.8.1+1
  [1914dd2f] MacroTools v0.5.5
  [739be429] MbedTLS v1.0.2
  [c8ffd9c3] MbedTLS_jll v2.16.0+2
  [442fdcdd] Measures v0.3.1
  [e89f7d12] Media v0.5.0
  [e1d29d7a] Missings v0.4.3
  [77ba4419] NaNMath v0.3.3
  [510215fc] Observables v0.3.1
  [e7412a2a] Ogg_jll v1.3.4+0
  [458c3c95] OpenSSL_jll v1.1.1+4
  [91d4177d] Opus_jll v1.3.1+1
  [bac558e1] OrderedCollections v1.2.0
  [69de0a69] Parsers v1.0.5
  [fa939f87] Pidfile v1.1.0
  [ccf2f8ad] PlotThemes v2.0.0
  [995b91a9] PlotUtils v1.0.5
  [91a5bcdd] Plots v1.5.0
  [c3e4b0f8] Pluto v0.9.10
  [3cdcf5f2] RecipesBase v1.0.1
  [01d81517] RecipesPipeline v0.1.11
  [189a3867] Reexport v0.2.0
  [ae029012] Requires v1.0.1
  [992d4aef] Showoff v0.3.1
  [a2af1166] SortingAlgorithms v0.3.1
  [90137ffa] StaticArrays v0.12.3
  [2913bbd2] StatsBase v0.33.0
  [88034a9c] StringDistances v0.6.5
  [09ab397b] StructArrays v0.4.4
  [3783bdb8] TableTraits v1.0.0
  [bd369af6] Tables v1.0.4
  [0796e94c] Tokenize v0.5.8
  [a2a6695c] TreeViews v0.3.0
  [30578b45] URIParser v0.4.1
  [0f1e0344] WebIO v0.8.14
  [104b5d7c] WebSockets v1.5.2
  [cc8bc4a8] Widgets v0.6.2
  [83775a58] Zlib_jll v1.2.11+14
  [0ac62f75] libass_jll v0.14.0+2
  [f638f0a6] libfdk_aac_jll v0.1.6+2
  [f27f6e37] libvorbis_jll v1.3.6+4
  [1270edf5] x264_jll v2019.5.25+2
  [dfaa095f] x265_jll v3.0.0+1
  [2a0f44e3] Base64 
  [ade2ca70] Dates 
  [8bb1440f] DelimitedFiles 
  [8ba89e20] Distributed 
  [7b1f6079] FileWatching 
  [b77e0a4c] InteractiveUtils 
  [76f85450] LibGit2 
  [8f399da3] Libdl 
  [37e2e46d] LinearAlgebra 
  [56ddb016] Logging 
  [d6f4376e] Markdown 
  [a63ad114] Mmap 
  [44cfe95a] Pkg 
  [de0858da] Printf 
  [9abbd945] Profile 
  [3fa0cd96] REPL 
  [9a3f8284] Random 
  [ea8e919c] SHA 
  [9e88b42a] Serialization 
  [1a1011a3] SharedArrays 
  [6462fe0b] Sockets 
  [2f01184e] SparseArrays 
  [10745b16] Statistics 
  [8dfed614] Test 
  [cf7118a7] UUIDs 
  [4ec0a83e] Unicode

Output of versioninfo():

julia> versioninfo()
Julia Version 1.4.2
Commit 44fa15b150* (2020-05-23 18:35 UTC)
Platform Info:
  OS: macOS (x86_64-apple-darwin18.7.0)
  CPU: Intel(R) Core(TM) i7-4790K CPU @ 4.00GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-8.0.1 (ORCJIT, haswell)
Environment:
  JULIA_EDITOR = sublime
@floswald floswald added the bug label Jun 30, 2020
@BeastyBlacksmith
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I can't reproduce, but there seems to be something off with your GKS installation or the GR <-> GKS communication.
Does rebuilding GR help?

@floswald
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i tried with rebuilding both GR and Plots several times - no. :-/

@floswald floswald mentioned this issue Jun 30, 2020
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@floswald
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moved to jheinen/GR.jl#330

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@floswald @BeastyBlacksmith