zlib error: <no message> (code: -5)

[saersamani]

Hi,

I am parsing through a zlib compressed XML file and get the below error during the decompression. The package that I am testing can be found here: https://bitbucket.org/SSamanipour/ms_import.jl/src/master/.

Any help is highly appreciated.

Cheers,
Saer

Got exception outside of a @test
zlib error: (code: -5)
Stacktrace:
[1] transcode(codec::CodecZlib.ZlibDecompressor, data::Vector{UInt8})
@ TranscodingStreams ~/.julia/packages/TranscodingStreams/IVlnc/src/transcode.jl:121
[2] transcode(#unused#::Type{CodecZlib.ZlibDecompressor}, data::Vector{UInt8})
@ TranscodingStreams ~/.julia/packages/TranscodingStreams/IVlnc/src/transcode.jl:34
[3] read_scan_info(line::LightXML.XMLElement, mz_thresh::Vector{Int64}, Int_thresh::Int64)
@ MS_Import ~/Desktop/dev/pkgs/ms_import.jl/src/MS_Import.jl:398
[4] read_scan(msRun::LightXML.XMLElement, mz_thresh::Vector{Int64}, Int_thresh::Int64)
@ MS_Import ~/Desktop/dev/pkgs/ms_import.jl/src/MS_Import.jl:330
[5] mzxml_read(path2mzxml::String, mz_thresh::Vector{Int64}, Int_thresh::Int64)
@ MS_Import ~/Desktop/dev/pkgs/ms_import.jl/src/MS_Import.jl:295
[6] import_files(pathin::String, filenames::Vector{String}, mz_thresh::Vector{Int64}, Int_thresh::Int64)
@ MS_Import ~/Desktop/dev/pkgs/ms_import.jl/src/MS_Import.jl:116
[7] import_files(pathin::String, filenames::Vector{String}, mz_thresh::Vector{Int64})
@ MS_Import ~/Desktop/dev/pkgs/ms_import.jl/src/MS_Import.jl:100
[8] macro expansion
@ ~/Desktop/dev/pkgs/ms_import.jl/test/runtests.jl:49 [inlined]
[9] macro expansion
@ /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1151 [inlined]
[10] top-level scope
@ ~/Desktop/dev/pkgs/ms_import.jl/test/runtests.jl:34
[11] include(fname::String)
@ Base.MainInclude ./client.jl:444
[12] top-level scope
@ none:6
[13] eval
@ ./boot.jl:360 [inlined]
[14] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[15] _start()
@ Base ./client.jl:485