RCall interaction

[gdkrmr]

using CABLAB

using RCall

c = CABLAB.Cube("/scratch/DataCube/v1.0.0/low-res/")

cdata_all = getCubeData(c)

​

WARNING: Method definition midpoints(Base.Range{T} where T) in module Base at deprecated.jl:56 overwritten in module StatsBase at /Net/Groups/BGI/people/gkraemer/.julia_atacama/v0.6/StatsBase/src/hist.jl:535.
WARNING: Method definition midpoints(AbstractArray{T, 1} where T) in module Base at deprecated.jl:56 overwritten in module StatsBase at /Net/Groups/BGI/people/gkraemer/.julia_atacama/v0.6/StatsBase/src/hist.jl:533.
INFO: Using proxy login.bgc-jena.mpg.de:3128 from http_proxy environment variable
INFO: Using HTTPS proxy login.bgc-jena.mpg.de:3128 from https_proxy environment variable
WARNING: Method definition ==(Base.Nullable{S}, Base.Nullable{T}) in module Base at nullable.jl:238 overwritten in module NullableArrays at /Net/Groups/BGI/people/gkraemer/.julia_atacama/v0.6/NullableArrays/src/operators.jl:99.
WARNING: Method definition promote_rule(Type{T}, Type{Any}) in module Missings at /Net/Groups/BGI/people/gkraemer/.julia_atacama/v0.6/Missings/src/Missings.jl:52 overwritten in module Nulls at /Net/Groups/BGI/people/gkraemer/.julia_atacama/v0.6/Nulls/src/Nulls.jl:29.

MethodError: ==(::Array{Any,1}, ::Array{Int64,1}) is ambiguous. Candidates:
  ==(A::AbstractArray{#s2,N} where N where #s2>:Nulls.Null, B::AbstractArray) in Nulls at /Net/Groups/BGI/people/gkraemer/.julia_atacama/v0.6/Nulls/src/Nulls.jl:181
  ==(A::AbstractArray{#s5,N} where N where #s5>:Missings.Missing, B::AbstractArray) in Missings at /Net/Groups/BGI/people/gkraemer/.julia_atacama/v0.6/Missings/src/Missings.jl:150
Possible fix, define
  ==(::AbstractArray{#s5,N} where N where #s5>:Union{Missings.Missing, Nulls.Null}, ::AbstractArray)

Stacktrace:
 [1] #getCubeData#6(::Array{Int64,1}, ::Array{Any,1}, ::Array{Any,1}, ::Array{Any,1}, ::Array{Any,1}, ::Function, ::CABLAB.CubeAPI.Cube) at /Net/Groups/BGI/people/gkraemer/.julia_atacama/v0.6/CABLAB/src/CubeAPI/CubeAPI.jl:405
 [2] getCubeData(::CABLAB.CubeAPI.Cube) at /Net/Groups/BGI/people/gkraemer/.julia_atacama/v0.6/CABLAB/src/CubeAPI/CubeAPI.jl:403
 [3] include_string(::String, ::String) at ./loading.jl:522

[meggart]

For me this is fixed on current master, the NullableArrays dependency is gone, can you please check again?