XMLError: internal error: Huge input lookup from XML parser

[KwatMDPhD]

What's going on?

[mattBrzezinski]

Do you have an example of what is broken? What version you are using of the package and Julia?

[KwatMDPhD]

1.7.2

http://www.gsea-msigdb.org/gsea/msigdb/download_file.jsp?filePath=/msigdb/release/7.5.1/msigdb_v7.5.1.xml

Thank you very much.

[mattBrzezinski]

1.7.2

http://www.gsea-msigdb.org/gsea/msigdb/download_file.jsp?filePath=/msigdb/release/7.5.1/msigdb_v7.5.1.xml

Thank you very much.

This is not a public file. Can you post what the error is that you're getting in Julia?

[KwatMDPhD]

Could you please try downloading the only .xml listed here? http://www.gsea-msigdb.org/gsea/downloads.jsp

You can use "kwatme8 at gmail. com"

[KwatMDPhD]

[mattBrzezinski]

This is a problem stemming in EzXML.jl, most likely because the file is too large and needs to be partitioned down.

[KwatMDPhD]

Is there anyway to read this big xml?

[mattBrzezinski]

Here's a list of other XML packages in Julia.

[KwatMDPhD]

Thank you for looking into this.