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1.6.0-DEV-3bfcb743c2.log
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1.6.0-DEV-3bfcb743c2.log
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Julia Version 1.6.0-DEV.1185
Commit 3bfcb743c2 (2020-10-11 23:29 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
JULIA_MAX_NUM_PRECOMPILE_FILES = 9223372036854775807
Resolving package versions...
Installed LibDeflate ───────── v0.1.0
Installed libdeflate_jll ───── v1.6.0+0
Installed CodecBGZF ────────── v0.1.0
Installed TranscodingStreams ─ v0.9.5
Updating `~/.julia/environments/v1.6/Project.toml`
[d9d91ef6] + CodecBGZF v0.1.0
Updating `~/.julia/environments/v1.6/Manifest.toml`
[d9d91ef6] + CodecBGZF v0.1.0
[9255714d] + LibDeflate v0.1.0
[3bb67fe8] + TranscodingStreams v0.9.5
[46979653] + libdeflate_jll v1.6.0+0
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[56ddb016] + Logging
[d6f4376e] + Markdown
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing CodecBGZF
Status `/tmp/jl_k6Cj70/Project.toml`
[d9d91ef6] CodecBGZF v0.1.0
[9255714d] LibDeflate v0.1.0
[3bb67fe8] TranscodingStreams v0.9.5
[8dfed614] Test
Status `/tmp/jl_k6Cj70/Manifest.toml`
[d9d91ef6] CodecBGZF v0.1.0
[9255714d] LibDeflate v0.1.0
[3bb67fe8] TranscodingStreams v0.9.5
[46979653] libdeflate_jll v1.6.0+0
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[56ddb016] Logging
[d6f4376e] Markdown
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[6462fe0b] Sockets
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
Test Summary: | Pass Total
VirtualOffset | 22 22
Test Summary: | Pass Total
Basics | 11 11
Simple I/O: Error During Test at /home/pkgeval/.julia/packages/CodecBGZF/pp3GD/test/runtests.jl:119
Test threw exception
Expression: eof(stream)
BGZFError("No EOF block. Truncated file?")
Stacktrace:
[1] bgzferror(s::String)
@ CodecBGZF ~/.julia/packages/CodecBGZF/pp3GD/src/CodecBGZF.jl:41
[2] check_eof_block
@ ~/.julia/packages/CodecBGZF/pp3GD/src/block.jl:59 [inlined]
[3] increment_block!(codec::CodecBGZF.BGZFCodec{LibDeflate.Decompressor, IOStream}, nodata::Bool)
@ CodecBGZF ~/.julia/packages/CodecBGZF/pp3GD/src/bgzfstream.jl:95
[4] process(codec::CodecBGZF.BGZFCodec{LibDeflate.Decompressor, IOStream}, input::TranscodingStreams.Memory, output::TranscodingStreams.Memory, error::TranscodingStreams.Error)
@ CodecBGZF ~/.julia/packages/CodecBGZF/pp3GD/src/bgzfstream.jl:256
[5] callprocess(stream::TranscodingStreams.TranscodingStream{CodecBGZF.BGZFCodec{LibDeflate.Decompressor, IOStream}, IOStream}, inbuf::TranscodingStreams.Buffer, outbuf::TranscodingStreams.Buffer)
@ TranscodingStreams ~/.julia/packages/TranscodingStreams/MsN8d/src/stream.jl:637
[6] fillbuffer(stream::TranscodingStreams.TranscodingStream{CodecBGZF.BGZFCodec{LibDeflate.Decompressor, IOStream}, IOStream}; eager::Bool)
@ TranscodingStreams ~/.julia/packages/TranscodingStreams/MsN8d/src/stream.jl:577
[7] fillbuffer
@ ~/.julia/packages/TranscodingStreams/MsN8d/src/stream.jl:564 [inlined]
[8] eof(stream::TranscodingStreams.TranscodingStream{CodecBGZF.BGZFCodec{LibDeflate.Decompressor, IOStream}, IOStream})
@ TranscodingStreams ~/.julia/packages/TranscodingStreams/MsN8d/src/stream.jl:188
[9] top-level scope
@ ~/.julia/packages/CodecBGZF/pp3GD/test/runtests.jl:119
[10] top-level scope
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144
[11] top-level scope
@ ~/.julia/packages/CodecBGZF/pp3GD/test/runtests.jl:114
Simple I/O: Error During Test at /home/pkgeval/.julia/packages/CodecBGZF/pp3GD/test/runtests.jl:120
Test threw exception
Expression: read(stream) == UInt8[]
BGZFError("No EOF block. Truncated file?")
Stacktrace:
[1] bgzferror(s::String)
@ CodecBGZF ~/.julia/packages/CodecBGZF/pp3GD/src/CodecBGZF.jl:41
[2] check_eof_block
@ ~/.julia/packages/CodecBGZF/pp3GD/src/block.jl:59 [inlined]
[3] increment_block!(codec::CodecBGZF.BGZFCodec{LibDeflate.Decompressor, IOStream}, nodata::Bool)
@ CodecBGZF ~/.julia/packages/CodecBGZF/pp3GD/src/bgzfstream.jl:95
[4] process(codec::CodecBGZF.BGZFCodec{LibDeflate.Decompressor, IOStream}, input::TranscodingStreams.Memory, output::TranscodingStreams.Memory, error::TranscodingStreams.Error)
@ CodecBGZF ~/.julia/packages/CodecBGZF/pp3GD/src/bgzfstream.jl:256
[5] callprocess(stream::TranscodingStreams.TranscodingStream{CodecBGZF.BGZFCodec{LibDeflate.Decompressor, IOStream}, IOStream}, inbuf::TranscodingStreams.Buffer, outbuf::TranscodingStreams.Buffer)
@ TranscodingStreams ~/.julia/packages/TranscodingStreams/MsN8d/src/stream.jl:637
[6] fillbuffer(stream::TranscodingStreams.TranscodingStream{CodecBGZF.BGZFCodec{LibDeflate.Decompressor, IOStream}, IOStream}; eager::Bool)
@ TranscodingStreams ~/.julia/packages/TranscodingStreams/MsN8d/src/stream.jl:577
[7] fillbuffer
@ ~/.julia/packages/TranscodingStreams/MsN8d/src/stream.jl:564 [inlined]
[8] eof(stream::TranscodingStreams.TranscodingStream{CodecBGZF.BGZFCodec{LibDeflate.Decompressor, IOStream}, IOStream})
@ TranscodingStreams ~/.julia/packages/TranscodingStreams/MsN8d/src/stream.jl:188
[9] readbytes!(stream::TranscodingStreams.TranscodingStream{CodecBGZF.BGZFCodec{LibDeflate.Decompressor, IOStream}, IOStream}, b::Vector{UInt8}, nb::Int64)
@ TranscodingStreams ~/.julia/packages/TranscodingStreams/MsN8d/src/stream.jl:371
[10] read(s::TranscodingStreams.TranscodingStream{CodecBGZF.BGZFCodec{LibDeflate.Decompressor, IOStream}, IOStream}, nb::Int64)
@ Base ./io.jl:962
[11] read(s::TranscodingStreams.TranscodingStream{CodecBGZF.BGZFCodec{LibDeflate.Decompressor, IOStream}, IOStream})
@ Base ./io.jl:961
[12] top-level scope
@ ~/.julia/packages/CodecBGZF/pp3GD/test/runtests.jl:120
[13] top-level scope
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144
[14] top-level scope
@ ~/.julia/packages/CodecBGZF/pp3GD/test/runtests.jl:114
Simple I/O: Test Failed at /home/pkgeval/.julia/packages/CodecBGZF/pp3GD/test/runtests.jl:121
Expression: read(stream, UInt8)
Expected: EOFError
Thrown: BGZFError
Stacktrace:
[1] top-level scope
@ ~/.julia/packages/CodecBGZF/pp3GD/test/runtests.jl:121
[2] top-level scope
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144
[3] top-level scope
@ ~/.julia/packages/CodecBGZF/pp3GD/test/runtests.jl:114
Test Summary: | Pass Fail Error Total
Simple I/O | 12 1 2 15
ERROR: LoadError: Some tests did not pass: 12 passed, 1 failed, 2 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/CodecBGZF/pp3GD/test/runtests.jl:112
ERROR: Package CodecBGZF errored during testing
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1609
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:331
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:318
[5] #test#62
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[6] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[7] #test#61
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(pkg::String)
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope
@ none:31