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1.4.0-DEV-efa66facf6.log
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Julia Version 1.4.0-DEV.648
Commit efa66facf6 (2019-12-19 21:21 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed DataAPI ───────────────────── v1.1.0
Installed Reexport ──────────────────── v0.2.0
Installed ElasticArrays ─────────────── v1.0.0
Installed Missings ──────────────────── v0.4.3
Installed WeakRefStrings ────────────── v0.6.1
Installed DiffRules ─────────────────── v1.0.0
Installed Stan ──────────────────────── v5.1.0
Installed StanDiagnose ──────────────── v1.1.2
Installed BinDeps ───────────────────── v1.0.0
Installed ArrayInterface ────────────── v2.1.0
Installed IterTools ─────────────────── v1.3.0
Installed StatsPlots ────────────────── v0.13.0
Installed FixedPointNumbers ─────────── v0.6.1
Installed DataStructures ────────────── v0.17.6
Installed AbstractMCMC ──────────────── v0.1.0
Installed AxisAlgorithms ────────────── v1.0.0
Installed WoodburyMatrices ──────────── v0.4.1
Installed DataFrames ────────────────── v0.20.0
Installed NearestNeighbors ──────────── v0.4.4
Installed Distributions ─────────────── v0.21.11
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed FilePathsBase ─────────────── v0.7.0
Installed Clustering ────────────────── v0.13.3
Installed StanRun ───────────────────── v0.2.1
Installed FFTW_jll ──────────────────── v3.3.9+3
Installed AbstractFFTs ──────────────── v0.5.0
Installed MCMCChains ────────────────── v0.4.1
Installed StanSamples ───────────────── v0.1.0
Installed Compat ────────────────────── v2.2.0
Installed StanOptimize ──────────────── v1.1.2
Installed LineSearches ──────────────── v7.0.1
Installed Colors ────────────────────── v0.10.0
Installed Optim ─────────────────────── v0.19.7
Installed IntelOpenMP_jll ───────────── v2018.0.3+0
Installed DiffResults ───────────────── v1.0.1
Installed RangeArrays ───────────────── v0.3.1
Installed SortingAlgorithms ─────────── v0.3.1
Installed FillArrays ────────────────── v0.8.2
Installed Rmath ─────────────────────── v0.6.0
Installed GR ────────────────────────── v0.44.0
Installed ColorTypes ────────────────── v0.8.1
Installed StaticArrays ──────────────── v0.12.1
Installed StanSample ────────────────── v1.1.2
Installed URIParser ─────────────────── v0.4.0
Installed Distances ─────────────────── v0.8.2
Installed TableTraits ───────────────── v1.0.0
Installed PositiveFactorizations ────── v0.2.3
Installed DiffEqDiffTools ───────────── v1.6.0
Installed NLSolversBase ─────────────── v7.5.0
Installed FFMPEG ────────────────────── v0.2.4
Installed DataValues ────────────────── v0.4.12
Installed FFTW ──────────────────────── v1.2.0
Installed SpecialFunctions ──────────── v0.9.0
Installed InvertedIndices ───────────── v1.0.0
Installed Parameters ────────────────── v0.12.0
Installed MKL_jll ───────────────────── v2019.0.117+0
Installed NamedTupleTools ───────────── v0.12.1
Installed StatsFuns ─────────────────── v0.9.3
Installed Documenter ────────────────── v0.24.3
Installed BinaryProvider ────────────── v0.5.8
Installed Requires ──────────────────── v0.5.2
Installed PDMats ────────────────────── v0.9.10
Installed Parsers ───────────────────── v0.3.10
Installed Calculus ──────────────────── v0.5.1
Installed GeometryTypes ─────────────── v0.7.6
Installed JSON ──────────────────────── v0.21.0
Installed Widgets ───────────────────── v0.6.2
Installed OrderedCollections ────────── v1.1.0
Installed Observables ───────────────── v0.2.3
Installed AxisArrays ────────────────── v0.3.3
Installed ForwardDiff ───────────────── v0.10.8
Installed PlotUtils ─────────────────── v0.6.1
Installed ArgCheck ──────────────────── v1.0.1
Installed OpenBLAS_jll ──────────────── v0.3.7+1
Installed Contour ───────────────────── v0.5.1
Installed DataValueInterfaces ───────── v1.0.0
Installed Tables ────────────────────── v0.2.11
Installed Arpack_jll ────────────────── v3.5.0+2
Installed OffsetArrays ──────────────── v0.11.4
Installed IntervalSets ──────────────── v0.3.2
Installed Showoff ───────────────────── v0.3.1
Installed CSV ───────────────────────── v0.5.20
Installed CommonSubexpressions ──────── v0.2.0
Installed QuadGK ────────────────────── v2.3.1
Installed PlotThemes ────────────────── v1.0.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Ratios ────────────────────── v0.3.1
Installed StanDump ──────────────────── v0.2.0
Installed StanBase ──────────────────── v1.1.3
Installed Plots ─────────────────────── v0.28.4
Installed MultivariateStats ─────────── v0.7.0
Installed NaNMath ───────────────────── v0.3.3
Installed ProgressMeter ─────────────── v1.2.0
Installed PooledArrays ──────────────── v0.5.2
Installed StatsBase ─────────────────── v0.32.0
Installed DocStringExtensions ───────── v0.8.1
Installed RecipesBase ───────────────── v0.7.0
Installed CategoricalArrays ─────────── v0.7.4
Installed Interpolations ────────────── v0.12.5
Installed KernelDensity ─────────────── v0.5.1
Installed Measures ──────────────────── v0.3.1
Installed StanVariational ───────────── v1.1.3
Installed Arpack ────────────────────── v0.4.0
Updating `~/.julia/environments/v1.4/Project.toml`
[682df890] + Stan v5.1.0
Updating `~/.julia/environments/v1.4/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[80f14c24] + AbstractMCMC v0.1.0
[dce04be8] + ArgCheck v1.0.1
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[4fba245c] + ArrayInterface v2.1.0
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[9e28174c] + BinDeps v1.0.0
[b99e7846] + BinaryProvider v0.5.8
[336ed68f] + CSV v0.5.20
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.4
[aaaa29a8] + Clustering v0.13.3
[3da002f7] + ColorTypes v0.8.1
[5ae59095] + Colors v0.10.0
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[d38c429a] + Contour v0.5.1
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.20.0
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[01453d9d] + DiffEqDiffTools v1.6.0
[163ba53b] + DiffResults v1.0.1
[b552c78f] + DiffRules v1.0.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.11
[ffbed154] + DocStringExtensions v0.8.1
[e30172f5] + Documenter v0.24.3
[fdbdab4c] + ElasticArrays v1.0.0
[c87230d0] + FFMPEG v0.2.4
[7a1cc6ca] + FFTW v1.2.0
[f5851436] + FFTW_jll v3.3.9+3
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.6.1
[f6369f11] + ForwardDiff v0.10.8
[28b8d3ca] + GR v0.44.0
[4d00f742] + GeometryTypes v0.7.6
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.5
[8197267c] + IntervalSets v0.3.2
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5ab0869b] + KernelDensity v0.5.1
[d3d80556] + LineSearches v7.0.1
[c7f686f2] + MCMCChains v0.4.1
[856f044c] + MKL_jll v2019.0.117+0
[442fdcdd] + Measures v0.3.1
[e1d29d7a] + Missings v0.4.3
[6f286f6a] + MultivariateStats v0.7.0
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[d9ec5142] + NamedTupleTools v0.12.1
[b8a86587] + NearestNeighbors v0.4.4
[510215fc] + Observables v0.2.3
[6fe1bfb0] + OffsetArrays v0.11.4
[4536629a] + OpenBLAS_jll v0.3.7+1
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[429524aa] + Optim v0.19.7
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[ccf2f8ad] + PlotThemes v1.0.1
[995b91a9] + PlotUtils v0.6.1
[91a5bcdd] + Plots v0.28.4
[2dfb63ee] + PooledArrays v0.5.2
[85a6dd25] + PositiveFactorizations v0.2.3
[92933f4c] + ProgressMeter v1.2.0
[1fd47b50] + QuadGK v2.3.1
[b3c3ace0] + RangeArrays v0.3.1
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.6.0
[992d4aef] + Showoff v0.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[682df890] + Stan v5.1.0
[d0ee94f6] + StanBase v1.1.3
[fb13fc95] + StanDiagnose v1.1.2
[9713c8f3] + StanDump v0.2.0
[fbd8da12] + StanOptimize v1.1.2
[d49c3b98] + StanRun v0.2.1
[c1514b29] + StanSample v1.1.2
[52d0d7a9] + StanSamples v0.1.0
[6ede68ce] + StanVariational v1.1.3
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[f3b207a7] + StatsPlots v0.13.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[30578b45] + URIParser v0.4.0
[ea10d353] + WeakRefStrings v0.6.1
[cc8bc4a8] + Widgets v0.6.2
[efce3f68] + WoodburyMatrices v0.4.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building GR ────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Path `/home/pkgeval/.julia/packages/GR/oiZD3` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_knnJs1/Project.toml`
[28b8d3ca] + GR v0.44.0 [`~/.julia/packages/GR/oiZD3`]
Updating `/tmp/jl_knnJs1/Manifest.toml`
[28b8d3ca] ~ GR v0.44.0 ⇒ v0.44.0 [`~/.julia/packages/GR/oiZD3`]
Building Rmath ─→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
Path `/home/pkgeval/.julia/packages/Rmath/BoBag` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_rjpjQL/Project.toml`
[79098fc4] + Rmath v0.6.0 [`~/.julia/packages/Rmath/BoBag`]
Updating `/tmp/jl_rjpjQL/Manifest.toml`
[79098fc4] ~ Rmath v0.6.0 ⇒ v0.6.0 [`~/.julia/packages/Rmath/BoBag`]
Building FFMPEG → `~/.julia/packages/FFMPEG/guN1x/deps/build.log`
Path `/home/pkgeval/.julia/packages/FFMPEG/guN1x` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_g8SY13/Project.toml`
[c87230d0] + FFMPEG v0.2.4 [`~/.julia/packages/FFMPEG/guN1x`]
Updating `/tmp/jl_g8SY13/Manifest.toml`
[c87230d0] ~ FFMPEG v0.2.4 ⇒ v0.2.4 [`~/.julia/packages/FFMPEG/guN1x`]
Building FFTW ──→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Path `/home/pkgeval/.julia/packages/FFTW/qqcBj` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_B4HNyd/Project.toml`
[7a1cc6ca] + FFTW v1.2.0 [`~/.julia/packages/FFTW/qqcBj`]
Updating `/tmp/jl_B4HNyd/Manifest.toml`
[7a1cc6ca] ~ FFTW v1.2.0 ⇒ v1.2.0 [`~/.julia/packages/FFTW/qqcBj`]
Building Plots ─→ `~/.julia/packages/Plots/qZHsp/deps/build.log`
Path `/home/pkgeval/.julia/packages/Plots/qZHsp` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_gsLLpp/Project.toml`
[91a5bcdd] + Plots v0.28.4 [`~/.julia/packages/Plots/qZHsp`]
Updating `/tmp/jl_gsLLpp/Manifest.toml`
[91a5bcdd] ~ Plots v0.28.4 ⇒ v0.28.4 [`~/.julia/packages/Plots/qZHsp`]
Testing Stan
Path `/home/pkgeval/.julia/packages/Stan/M2dSz` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_35jowJ/Project.toml`
[682df890] + Stan v5.1.0 [`~/.julia/packages/Stan/M2dSz`]
Updating `/tmp/jl_35jowJ/Manifest.toml`
[682df890] ~ Stan v5.1.0 ⇒ v5.1.0 [`~/.julia/packages/Stan/M2dSz`]
Running sandbox
Status `/tmp/jl_35jowJ/Project.toml`
[ffbed154] DocStringExtensions v0.8.1
[e30172f5] Documenter v0.24.3
[682df890] Stan v5.1.0 [`~/.julia/packages/Stan/M2dSz`]
[fb13fc95] StanDiagnose v1.1.2
[fbd8da12] StanOptimize v1.1.2
[c1514b29] StanSample v1.1.2
[6ede68ce] StanVariational v1.1.3
[f3b207a7] StatsPlots v0.13.0
[9a3f8284] Random
[10745b16] Statistics
[8dfed614] Test
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/iNJeT/src/StanBase.jl:58
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/iNJeT/src/StanBase.jl:58
/tmp/jl_yT1dNT/kid.stan updated.
Examples/ARM/Ch03/Kid/kidscore.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] SampleModel(::String, ::String, ::Array{Int64,1}; method::StanSample.Sample, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples/ARM/Ch03/Kid/kidscore.jl:175
[10] include(::String) at ./client.jl:439
[11] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[12] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[14] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[16] include(::String) at ./client.jl:439
[17] top-level scope at none:6
[18] eval(::Module, ::Any) at ./boot.jl:331
[19] exec_options(::Base.JLOptions) at ./client.jl:264
[20] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples/ARM/Ch03/Kid/kidscore.jl:175
/tmp/jl_hLA16c/bernoulli.stan updated.
Examples/Bernoulli/bernoulli.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] SampleModel(::String, ::String, ::Array{Int64,1}; method::StanSample.Sample, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:54
[8] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples/Bernoulli/bernoulli.jl:21
[9] include(::String) at ./client.jl:439
[10] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[11] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[12] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[13] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[14] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[15] include(::String) at ./client.jl:439
[16] top-level scope at none:6
[17] eval(::Module, ::Any) at ./boot.jl:331
[18] exec_options(::Base.JLOptions) at ./client.jl:264
[19] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples/Bernoulli/bernoulli.jl:21
/tmp/jl_yHxcDw/binomial.stan updated.
Examples/Binomial/binomial.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] SampleModel(::String, ::String, ::Array{Int64,1}; method::StanSample.Sample, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples/Binomial/binomial.jl:30
[10] include(::String) at ./client.jl:439
[11] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[12] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[14] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[16] include(::String) at ./client.jl:439
[17] top-level scope at none:6
[18] eval(::Module, ::Any) at ./boot.jl:331
[19] exec_options(::Base.JLOptions) at ./client.jl:264
[20] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples/Binomial/binomial.jl:30
/tmp/jl_Pi6vkQ/binormal.stan updated.
Examples/Binormal/binormal.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] SampleModel(::String, ::String, ::Array{Int64,1}; method::StanSample.Sample, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples/Binormal/binormal.jl:25
[10] include(::String) at ./client.jl:439
[11] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[12] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[14] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[16] include(::String) at ./client.jl:439
[17] top-level scope at none:6
[18] eval(::Module, ::Any) at ./boot.jl:331
[19] exec_options(::Base.JLOptions) at ./client.jl:264
[20] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples/Binormal/binormal.jl:25
/tmp/jl_sItRak/dyes.stan updated.
Examples/Dyes/dyes.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] SampleModel(::String, ::String, ::Array{Int64,1}; method::StanSample.Sample, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples/Dyes/dyes.jl:58
[10] include(::String) at ./client.jl:439
[11] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[12] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[14] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[16] include(::String) at ./client.jl:439
[17] top-level scope at none:6
[18] eval(::Module, ::Any) at ./boot.jl:331
[19] exec_options(::Base.JLOptions) at ./client.jl:264
[20] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples/Dyes/dyes.jl:58
/tmp/jl_DJD9CO/schools8.stan updated.
Examples/EightSchools/schools8.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] SampleModel(::String, ::String, ::Array{Int64,1}; method::StanSample.Sample, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples/EightSchools/schools8.jl:33
[10] include(::String) at ./client.jl:439
[11] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[12] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[14] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[16] include(::String) at ./client.jl:439
[17] top-level scope at none:6
[18] eval(::Module, ::Any) at ./boot.jl:331
[19] exec_options(::Base.JLOptions) at ./client.jl:264
[20] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples/EightSchools/schools8.jl:33
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/iNJeT/src/StanBase.jl:58
/tmp/jl_cwpYQy/diagnose.stan updated.
Examples_Stan_Methods/Diagnose/diagnose.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] DiagnoseModel(::String, ::String, ::Array{Int64,1}; method::StanDiagnose.Diagnose, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanDiagnose/iPhvw/src/stanmodel/DiagnoseModel.jl:52
[8] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Stan_Methods/Diagnose/diagnose.jl:20
[9] include(::String) at ./client.jl:439
[10] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[11] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[12] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[13] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[14] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[15] include(::String) at ./client.jl:439
[16] top-level scope at none:6
[17] eval(::Module, ::Any) at ./boot.jl:331
[18] exec_options(::Base.JLOptions) at ./client.jl:264
[19] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Stan_Methods/Diagnose/diagnose.jl:20
/tmp/jl_3HCNgj/generate_quantities.stan updated.
Examples_Stan_Methods/Generate_Quantities/generate_quantities.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] SampleModel(::String, ::String, ::Array{Int64,1}; method::StanSample.Sample, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Stan_Methods/Generate_Quantities/generate_quantities.jl:32
[10] include(::String) at ./client.jl:439
[11] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[12] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[14] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[16] include(::String) at ./client.jl:439
[17] top-level scope at none:6
[18] eval(::Module, ::Any) at ./boot.jl:331
[19] exec_options(::Base.JLOptions) at ./client.jl:264
[20] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Stan_Methods/Generate_Quantities/generate_quantities.jl:32
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/iNJeT/src/StanBase.jl:58
/tmp/jl_WhF0al/optimize_1.stan updated.
Examples_Stan_Methods/Optimize/optimize.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] OptimizeModel(::String, ::String, ::Array{Int64,1}; method::StanOptimize.Optimize, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanOptimize/KFcBV/src/stanmodel/OptimizeModel.jl:52
[8] OptimizeModel at /home/pkgeval/.julia/packages/StanOptimize/KFcBV/src/stanmodel/OptimizeModel.jl:49 [inlined] (repeats 2 times)
[9] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Stan_Methods/Optimize/optimize.jl:21
[10] include(::String) at ./client.jl:439
[11] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[12] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[14] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[16] include(::String) at ./client.jl:439
[17] top-level scope at none:6
[18] eval(::Module, ::Any) at ./boot.jl:331
[19] exec_options(::Base.JLOptions) at ./client.jl:264
[20] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Stan_Methods/Optimize/optimize.jl:21
/tmp/jl_LaBAjn/parse_and_interpolate.stan updated.
Examples_Stan_Methods/Parse_and_Interpolate/parse.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] SampleModel(::String, ::String, ::Array{Int64,1}; method::StanSample.Sample, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Stan_Methods/Parse_and_Interpolate/parse.jl:36
[10] include(::String) at ./client.jl:439
[11] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[12] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[14] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[16] include(::String) at ./client.jl:439
[17] top-level scope at none:6
[18] eval(::Module, ::Any) at ./boot.jl:331
[19] exec_options(::Base.JLOptions) at ./client.jl:264
[20] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Stan_Methods/Parse_and_Interpolate/parse.jl:36
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/iNJeT/src/StanBase.jl:58
/tmp/jl_ihVlJG/variational.stan updated.
Examples_Stan_Methods/Variational/variational.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] VariationalModel(::String, ::String, ::Array{Int64,1}; method::StanVariational.Variational, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanVariational/ygQYW/src/stanmodel/VariationalModel.jl:52
[8] VariationalModel at /home/pkgeval/.julia/packages/StanVariational/ygQYW/src/stanmodel/VariationalModel.jl:49 [inlined] (repeats 2 times)
[9] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Stan_Methods/Variational/variational.jl:24
[10] include(::String) at ./client.jl:439
[11] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[12] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[14] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[16] include(::String) at ./client.jl:439
[17] top-level scope at none:6
[18] eval(::Module, ::Any) at ./boot.jl:331
[19] exec_options(::Base.JLOptions) at ./client.jl:264
[20] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Stan_Methods/Variational/variational.jl:24
/tmp/jl_B4Fhk0/diagnostics.stan updated.
Examples_Test_Cases/Diagnostics/diagnostics.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] SampleModel(::String, ::String, ::Array{Int64,1}; method::StanSample.Sample, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Test_Cases/Diagnostics/diagnostics.jl:21
[10] include(::String) at ./client.jl:439
[11] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[12] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[14] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[16] include(::String) at ./client.jl:439
[17] top-level scope at none:6
[18] eval(::Module, ::Any) at ./boot.jl:331
[19] exec_options(::Base.JLOptions) at ./client.jl:264
[20] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Test_Cases/Diagnostics/diagnostics.jl:21
/tmp/jl_EMaMRk/init_dict.stan updated.
Examples_Test_Cases/InitThetaDict/init_dict.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] SampleModel(::String, ::String, ::Array{Int64,1}; method::StanSample.Sample, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:54
[8] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Test_Cases/InitThetaDict/init_dict.jl:22
[9] include(::String) at ./client.jl:439
[10] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[11] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[12] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[13] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[14] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[15] include(::String) at ./client.jl:439
[16] top-level scope at none:6
[17] eval(::Module, ::Any) at ./boot.jl:331
[18] exec_options(::Base.JLOptions) at ./client.jl:264
[19] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Test_Cases/InitThetaDict/init_dict.jl:22
/tmp/jl_lmCJGF/init_dict_array.stan updated.
Examples_Test_Cases/InitThetaDictArray/init_dict_array.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] SampleModel(::String, ::String, ::Array{Int64,1}; method::StanSample.Sample, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:54
[8] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Test_Cases/InitThetaDictArray/init_dict_array.jl:25
[9] include(::String) at ./client.jl:439
[10] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[11] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[12] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[13] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[14] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[15] include(::String) at ./client.jl:439
[16] top-level scope at none:6
[17] eval(::Module, ::Any) at ./boot.jl:331
[18] exec_options(::Base.JLOptions) at ./client.jl:264
[19] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Test_Cases/InitThetaDictArray/init_dict_array.jl:25
/tmp/jl_Gz3iG0/init_file.stan updated.
Examples_Test_Cases/InitThetaFile/init_file.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] SampleModel(::String, ::String, ::Array{Int64,1}; method::StanSample.Sample, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Test_Cases/InitThetaFile/init_file.jl:22
[10] include(::String) at ./client.jl:439
[11] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[12] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[14] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[16] include(::String) at ./client.jl:439
[17] top-level scope at none:6
[18] eval(::Module, ::Any) at ./boot.jl:331
[19] exec_options(::Base.JLOptions) at ./client.jl:264
[20] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Test_Cases/InitThetaFile/init_file.jl:22
/tmp/jl_XpvXPl/namedarray.stan updated.
Examples_Test_Cases/NamedArray/namedarray.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] SampleModel(::String, ::String, ::Array{Int64,1}; method::StanSample.Sample, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Test_Cases/NamedArray/namedarray.jl:21
[10] include(::String) at ./client.jl:439
[11] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[12] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[14] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[16] include(::String) at ./client.jl:439
[17] top-level scope at none:6
[18] eval(::Module, ::Any) at ./boot.jl:331
[19] exec_options(::Base.JLOptions) at ./client.jl:264
[20] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Test_Cases/NamedArray/namedarray.jl:21
/tmp/jl_4Rnq9G/scalar.stan updated.
Examples_Test_Cases/ScalarObs/scalar.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] SampleModel(::String, ::String, ::Array{Int64,1}; method::StanSample.Sample, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Test_Cases/ScalarObs/scalar.jl:21
[10] include(::String) at ./client.jl:439
[11] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[12] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[14] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[16] include(::String) at ./client.jl:439
[17] top-level scope at none:6
[18] eval(::Module, ::Any) at ./boot.jl:331
[19] exec_options(::Base.JLOptions) at ./client.jl:264
[20] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Test_Cases/ScalarObs/scalar.jl:21
/tmp/jl_lp1e12/zerolengtharray.stan updated.
Examples_Test_Cases/ZeroLengthArray/zerolengtharray.jl: Error During Test at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:34
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanRun.var"#1#2")() at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:25
[2] (::Base.var"#463#464"{StanRun.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:24 [inlined]
[6] StanModel at /home/pkgeval/.julia/packages/StanRun/E3YcJ/src/StanRun.jl:82 [inlined]
[7] SampleModel(::String, ::String, ::Array{Int64,1}; method::StanSample.Sample, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:54
[8] SampleModel at /home/pkgeval/.julia/packages/StanSample/e3hsD/src/stanmodel/SampleModel.jl:51 [inlined] (repeats 2 times)
[9] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Test_Cases/ZeroLengthArray/zerolengtharray.jl:20
[10] include(::String) at ./client.jl:439
[11] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[12] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:35 [inlined]
[14] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:32
[16] include(::String) at ./client.jl:439
[17] top-level scope at none:6
[18] eval(::Module, ::Any) at ./boot.jl:331
[19] exec_options(::Base.JLOptions) at ./client.jl:264
[20] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/Examples_Test_Cases/ZeroLengthArray/zerolengtharray.jl:20
Test Summary: | Error Total
Stan.jl v6.0 | 18 18
Examples/ARM/Ch03/Kid/kidscore.jl | 1 1
Examples/Bernoulli/bernoulli.jl | 1 1
Examples/Binomial/binomial.jl | 1 1
Examples/Binormal/binormal.jl | 1 1
Examples/Dyes/dyes.jl | 1 1
Examples/EightSchools/schools8.jl | 1 1
Examples_Stan_Methods/Diagnose/diagnose.jl | 1 1
Examples_Stan_Methods/Generate_Quantities/generate_quantities.jl | 1 1
Examples_Stan_Methods/Optimize/optimize.jl | 1 1
Examples_Stan_Methods/Parse_and_Interpolate/parse.jl | 1 1
Examples_Stan_Methods/Variational/variational.jl | 1 1
Examples_Test_Cases/Diagnostics/diagnostics.jl | 1 1
Examples_Test_Cases/InitThetaDict/init_dict.jl | 1 1
Examples_Test_Cases/InitThetaDictArray/init_dict_array.jl | 1 1
Examples_Test_Cases/InitThetaFile/init_file.jl | 1 1
Examples_Test_Cases/NamedArray/namedarray.jl | 1 1
Examples_Test_Cases/ScalarObs/scalar.jl | 1 1
Examples_Test_Cases/ZeroLengthArray/zerolengtharray.jl | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 18 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl:30
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/Stan/M2dSz/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/Stan/M2dSz/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package Stan errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1475
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:300
[5] #test#66 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:294 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:293 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:292
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:292
[11] top-level scope at none:12