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1.4.0-DEV-efa66facf6.log
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Julia Version 1.4.0-DEV.648
Commit efa66facf6 (2019-12-19 21:21 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed MuladdMacro ───────────────── v0.2.1
Installed FunctionWrappers ──────────── v1.0.0
Installed Compat ────────────────────── v2.2.0
Installed ArrayInterface ────────────── v2.1.0
Installed LSODA ─────────────────────── v0.6.1
Installed BinDeps ───────────────────── v1.0.0
Installed DataStructures ────────────── v0.17.6
Installed StaticArrays ──────────────── v0.12.1
Installed URIParser ─────────────────── v0.4.0
Installed Requires ──────────────────── v0.5.2
Installed RecursiveArrayTools ───────── v1.2.0
Installed TableTraits ───────────────── v1.0.0
Installed TreeViews ─────────────────── v0.3.0
Installed RecursiveFactorization ────── v0.1.0
Installed Parameters ────────────────── v0.12.0
Installed DiffEqDiffTools ───────────── v1.6.0
Installed RecipesBase ───────────────── v0.7.0
Installed ZygoteRules ───────────────── v0.2.0
Installed OrderedCollections ────────── v1.1.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed MacroTools ────────────────── v0.5.3
Installed IterativeSolvers ──────────── v0.8.1
Installed DocStringExtensions ───────── v0.8.1
Installed DiffEqBase ────────────────── v6.9.4
Installed Roots ─────────────────────── v0.8.4
Updating `~/.julia/environments/v1.4/Project.toml`
[7f56f5a3] + LSODA v0.6.1
Updating `~/.julia/environments/v1.4/Manifest.toml`
[4fba245c] + ArrayInterface v2.1.0
[9e28174c] + BinDeps v1.0.0
[34da2185] + Compat v2.2.0
[864edb3b] + DataStructures v0.17.6
[2b5f629d] + DiffEqBase v6.9.4
[01453d9d] + DiffEqDiffTools v1.6.0
[ffbed154] + DocStringExtensions v0.8.1
[069b7b12] + FunctionWrappers v1.0.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[7f56f5a3] + LSODA v0.6.1
[1914dd2f] + MacroTools v0.5.3
[46d2c3a1] + MuladdMacro v0.2.1
[bac558e1] + OrderedCollections v1.1.0
[d96e819e] + Parameters v0.12.0
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v1.2.0
[f2c3362d] + RecursiveFactorization v0.1.0
[ae029012] + Requires v0.5.2
[f2b01f46] + Roots v0.8.4
[90137ffa] + StaticArrays v0.12.1
[3783bdb8] + TableTraits v1.0.0
[a2a6695c] + TreeViews v0.3.0
[30578b45] + URIParser v0.4.0
[700de1a5] + ZygoteRules v0.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building LSODA → `~/.julia/packages/LSODA/uaBH4/deps/build.log`
Path `/home/pkgeval/.julia/packages/LSODA/uaBH4` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_Pxjo9Q/Project.toml`
[7f56f5a3] + LSODA v0.6.1 [`~/.julia/packages/LSODA/uaBH4`]
Updating `/tmp/jl_Pxjo9Q/Manifest.toml`
[7f56f5a3] ~ LSODA v0.6.1 ⇒ v0.6.1 [`~/.julia/packages/LSODA/uaBH4`]
Testing LSODA
Path `/home/pkgeval/.julia/packages/LSODA/uaBH4` exists and looks like the correct package. Using existing path.
Installed DataAPI ───────────────── v1.1.0
Installed ElasticArrays ─────────── v1.0.0
Installed Reexport ──────────────── v0.2.0
Installed DiffRules ─────────────── v0.1.0
Installed DiffEqProblemLibrary ──── v4.6.4
Installed DiffEqJump ────────────── v6.4.0
Installed Formatting ────────────── v0.4.1
Installed FixedPolynomials ──────── v0.4.0
Installed OpenSpecFun_jll ───────── v0.5.3+1
Installed DiffResults ───────────── v1.0.1
Installed NameResolution ────────── v0.1.3
Installed DiffEqOperators ───────── v4.6.0
Installed RandomNumbers ─────────── v1.3.0
Installed FillArrays ────────────── v0.8.2
Installed Latexify ──────────────── v0.12.3
Installed BandedMatrices ────────── v0.14.2
Installed DynamicPolynomials ────── v0.3.4
Installed Crayons ───────────────── v4.0.1
Installed NNlib ─────────────────── v0.6.0
Installed SpecialFunctions ──────── v0.9.0
Installed DiffEqBiological ──────── v4.1.0
Installed BinaryProvider ────────── v0.5.8
Installed MultivariatePolynomials ─ v0.3.4
Installed HomotopyContinuation ──── v1.3.1
Installed GenericSVD ────────────── v0.2.2
Installed Quadmath ──────────────── v0.5.2
Installed Polynomials ───────────── v0.6.0
Installed MixedSubdivisions ─────── v1.0.0
Installed ForwardDiff ───────────── v0.10.8
Installed GeneralizedGenerated ──── v0.2.0
Installed LazyArrays ────────────── v0.14.10
Installed LaTeXStrings ──────────── v1.0.3
Installed ModelingToolkit ───────── v1.0.3
Installed DataValueInterfaces ───── v1.0.0
Installed Tables ────────────────── v0.2.11
Installed PoissonRandom ─────────── v0.4.0
Installed CommonSubexpressions ──── v0.2.0
Installed BlockBandedMatrices ───── v0.6.0
Installed DoubleFloats ──────────── v1.0.3
Installed MutableArithmetics ────── v0.1.1
Installed PrettyTables ──────────── v0.6.0
Installed TimerOutputs ──────────── v0.5.3
Installed ProjectiveVectors ─────── v1.1.2
Installed JuliaVariables ────────── v0.2.0
Installed MLStyle ───────────────── v0.3.1
Installed PrettyPrint ───────────── v0.1.0
Installed SymEngine ─────────────── v0.7.0
Installed ArrayLayouts ──────────── v0.1.5
Installed NaNMath ───────────────── v0.3.3
Installed CanonicalTraits ───────── v0.1.0
Installed BlockArrays ───────────── v0.10.2
Installed ProgressMeter ─────────── v1.2.0
Installed GenericSchur ──────────── v0.3.0
Installed MatrixFactorizations ──── v0.2.1
Installed StaticPolynomials ─────── v1.3.3
Updating `/tmp/jl_e0ozyV/Project.toml`
[a077e3f3] + DiffEqProblemLibrary v4.6.4
[7f56f5a3] + LSODA v0.6.1 [`~/.julia/packages/LSODA/uaBH4`]
Updating `/tmp/jl_e0ozyV/Manifest.toml`
[4c555306] + ArrayLayouts v0.1.5
[aae01518] + BandedMatrices v0.14.2
[b99e7846] + BinaryProvider v0.5.8
[8e7c35d0] + BlockArrays v0.10.2
[ffab5731] + BlockBandedMatrices v0.6.0
[a603d957] + CanonicalTraits v0.1.0
[bbf7d656] + CommonSubexpressions v0.2.0
[a8cc5b0e] + Crayons v4.0.1
[9a962f9c] + DataAPI v1.1.0
[e2d170a0] + DataValueInterfaces v1.0.0
[eb300fae] + DiffEqBiological v4.1.0
[c894b116] + DiffEqJump v6.4.0
[9fdde737] + DiffEqOperators v4.6.0
[a077e3f3] + DiffEqProblemLibrary v4.6.4
[163ba53b] + DiffResults v1.0.1
[b552c78f] + DiffRules v0.1.0
[497a8b3b] + DoubleFloats v1.0.3
[7c1d4256] + DynamicPolynomials v0.3.4
[fdbdab4c] + ElasticArrays v1.0.0
[1a297f60] + FillArrays v0.8.2
[3dd14ad9] + FixedPolynomials v0.4.0
[59287772] + Formatting v0.4.1
[f6369f11] + ForwardDiff v0.10.8
[6b9d7cbe] + GeneralizedGenerated v0.2.0
[01680d73] + GenericSVD v0.2.2
[c145ed77] + GenericSchur v0.3.0
[f213a82b] + HomotopyContinuation v1.3.1
[b14d175d] + JuliaVariables v0.2.0
[7f56f5a3] ~ LSODA v0.6.1 ⇒ v0.6.1 [`~/.julia/packages/LSODA/uaBH4`]
[b964fa9f] + LaTeXStrings v1.0.3
[23fbe1c1] + Latexify v0.12.3
[5078a376] + LazyArrays v0.14.10
[d8e11817] + MLStyle v0.3.1
[a3b82374] + MatrixFactorizations v0.2.1
[291d046c] + MixedSubdivisions v1.0.0
[961ee093] + ModelingToolkit v1.0.3
[102ac46a] + MultivariatePolynomials v0.3.4
[d8a4904e] + MutableArithmetics v0.1.1
[872c559c] + NNlib v0.6.0
[77ba4419] + NaNMath v0.3.3
[71a1bf82] + NameResolution v0.1.3
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[e409e4f3] + PoissonRandom v0.4.0
[f27b6e38] + Polynomials v0.6.0
[8162dcfd] + PrettyPrint v0.1.0
[08abe8d2] + PrettyTables v0.6.0
[92933f4c] + ProgressMeter v1.2.0
[01f381cc] + ProjectiveVectors v1.1.2
[be4d8f0f] + Quadmath v0.5.2
[e6cf234a] + RandomNumbers v1.3.0
[189a3867] + Reexport v0.2.0
[276daf66] + SpecialFunctions v0.9.0
[62e018b1] + StaticPolynomials v1.3.3
[123dc426] + SymEngine v0.7.0
[bd369af6] + Tables v0.2.11
[a759f4b9] + TimerOutputs v0.5.3
[9fa8497b] + Future
Building SymEngine → `~/.julia/packages/SymEngine/zSUGO/deps/build.log`
Path `/home/pkgeval/.julia/packages/SymEngine/zSUGO` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_4BrNXY/Project.toml`
[123dc426] + SymEngine v0.7.0 [`~/.julia/packages/SymEngine/zSUGO`]
Updating `/tmp/jl_4BrNXY/Manifest.toml`
[123dc426] ~ SymEngine v0.7.0 ⇒ v0.7.0 [`~/.julia/packages/SymEngine/zSUGO`]
Running sandbox
Status `/tmp/jl_e0ozyV/Project.toml`
[9e28174c] BinDeps v1.0.0
[34da2185] Compat v2.2.0
[2b5f629d] DiffEqBase v6.9.4
[a077e3f3] DiffEqProblemLibrary v4.6.4
[7f56f5a3] LSODA v0.6.1 [`~/.julia/packages/LSODA/uaBH4`]
[d96e819e] Parameters v0.12.0
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[de0858da] Printf
[8dfed614] Test
WARNING: Method definition ldiv!(AbstractArray{T, N} where N where T, AbstractArray{T, 2} where T, AbstractArray{T, N} where N where T) in module LinearAlgebra at /workspace/srcdir/usr/share/julia/stdlib/v1.4/LinearAlgebra/src/generic.jl:247 overwritten in module DiffEqBase at /home/pkgeval/.julia/packages/DiffEqBase/runpo/src/init.jl:6.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition ldiv!(AbstractArray{T, N} where N where T, LinearAlgebra.Diagonal{T, V} where V<:AbstractArray{T, 1} where T, AbstractArray{T, N} where N where T) in module LinearAlgebra at /workspace/srcdir/usr/share/julia/stdlib/v1.4/LinearAlgebra/src/diagonal.jl:430 overwritten in module DiffEqBase at /home/pkgeval/.julia/packages/DiffEqBase/runpo/src/init.jl:7.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition ldiv!(AbstractArray{T, N} where N where T, LinearAlgebra.Diagonal{T, V} where V<:AbstractArray{T, 1} where T, AbstractArray{T, N} where N where T) in module LinearAlgebra at /workspace/srcdir/usr/share/julia/stdlib/v1.4/LinearAlgebra/src/diagonal.jl:430 overwritten in module DiffEqBase at /home/pkgeval/.julia/packages/DiffEqBase/runpo/src/init.jl:7.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition ldiv!(AbstractArray{T, N} where N where T, AbstractArray{T, 2} where T, AbstractArray{T, N} where N where T) in module LinearAlgebra at /workspace/srcdir/usr/share/julia/stdlib/v1.4/LinearAlgebra/src/generic.jl:247 overwritten in module DiffEqBase at /home/pkgeval/.julia/packages/DiffEqBase/runpo/src/init.jl:6.
** incremental compilation may be fatally broken for this module **
--> test1 =============
at t = 4.0000e-01 y= 9.851712e-01 3.386380e-05 1.479493e-02
at t = 4.0000e+00 y= 9.055333e-01 2.240655e-05 9.444430e-02
at t = 4.0000e+01 y= 7.158403e-01 9.186334e-06 2.841505e-01
at t = 4.0000e+02 y= 4.505250e-01 3.222964e-06 5.494717e-01
at t = 4.0000e+03 y= 1.831976e-01 8.941774e-07 8.168016e-01
at t = 4.0000e+04 y= 3.898729e-02 1.621940e-07 9.610125e-01
at t = 4.0000e+05 y= 4.936362e-03 1.984221e-08 9.950636e-01
at t = 4.0000e+06 y= 5.161832e-04 2.065786e-09 9.994838e-01
at t = 4.0000e+07 y= 5.179811e-05 2.072030e-10 9.999482e-01
at t = 4.0000e+08 y= 5.283524e-06 2.113421e-11 9.999947e-01
at t = 4.0000e+09 y= 4.658945e-07 1.863579e-12 9.999995e-01
at t = 4.0000e+10 y= 1.423394e-08 5.693580e-14 1.000000e+00
0.253884 seconds (111.13 k allocations: 5.500 MiB)
Done!
--> test2 =============
####################################
--> Use of a old wrapper for speed comparison
at t = 4.0000e-01 y= 9.851712e-01 3.386380e-05 1.479493e-02
at t = 4.0000e+00 y= 9.055333e-01 2.240655e-05 9.444430e-02
at t = 4.0000e+01 y= 7.158403e-01 9.186334e-06 2.841505e-01
at t = 4.0000e+02 y= 4.505250e-01 3.222964e-06 5.494717e-01
at t = 4.0000e+03 y= 1.831976e-01 8.941774e-07 8.168016e-01
at t = 4.0000e+04 y= 3.898729e-02 1.621940e-07 9.610125e-01
at t = 4.0000e+05 y= 4.936362e-03 1.984221e-08 9.950636e-01
at t = 4.0000e+06 y= 5.161832e-04 2.065786e-09 9.994838e-01
at t = 4.0000e+07 y= 5.179811e-05 2.072030e-10 9.999482e-01
at t = 4.0000e+08 y= 5.283524e-06 2.113421e-11 9.999947e-01
at t = 4.0000e+09 y= 4.658945e-07 1.863579e-12 9.999995e-01
at t = 4.0000e+10 y= 1.423394e-08 5.693580e-14 1.000000e+00
0.265430 seconds (167.43 k allocations: 9.089 MiB)
at t = 4.0000e-01 y= 9.851712e-01 3.386380e-05 1.479493e-02
at t = 4.0000e+00 y= 9.055333e-01 2.240655e-05 9.444430e-02
at t = 4.0000e+01 y= 7.158403e-01 9.186334e-06 2.841505e-01
at t = 4.0000e+02 y= 4.505250e-01 3.222964e-06 5.494717e-01
at t = 4.0000e+03 y= 1.831976e-01 8.941774e-07 8.168016e-01
at t = 4.0000e+04 y= 3.898729e-02 1.621940e-07 9.610125e-01
at t = 4.0000e+05 y= 4.936362e-03 1.984221e-08 9.950636e-01
at t = 4.0000e+06 y= 5.161832e-04 2.065786e-09 9.994838e-01
at t = 4.0000e+07 y= 5.179811e-05 2.072030e-10 9.999482e-01
at t = 4.0000e+08 y= 5.283524e-06 2.113421e-11 9.999947e-01
at t = 4.0000e+09 y= 4.658945e-07 1.863579e-12 9.999995e-01
at t = 4.0000e+10 y= 1.423394e-08 5.693580e-14 1.000000e+00
0.004486 seconds (5.64 k allocations: 189.906 KiB)
####################################
--> Use of a vector of times where output is required
0.000583 seconds (2.10 k allocations: 121.719 KiB)
[1.0 0.0 0.0; 0.9117498086984066 2.3136637010161643e-5 0.08822705466458301; 0.7168574510586648 9.225656356311463e-6 0.2831333232849786; 0.45064987670641043 3.224549836424619e-6 0.5493468987437528; 0.1832071493284031 8.942344550451599e-7 0.816791956437141; 0.038987610466965146 1.6219532978337258e-7 0.9610122273377235; 0.004936367159428996 1.9842228732487494e-8 0.9950636129983443; 0.0005161832371000238 2.0657863218022536e-9 0.9994838146971157; 5.17981097996989e-5 2.0720298544703764e-10 0.9999482016829992; 5.283529976059877e-6 2.1134227787678053e-11 0.999994716448891; 4.6589345995941924e-7 1.863574659005969e-12 0.9999995341046749; 1.4236839022117508e-8 5.694740833562382e-14 0.9999999857631037]
####################################
--> Use of a lsoda_evolve!
--> test common =============
WARNING: Method definition ldiv!(AbstractArray{T, N} where N where T, LinearAlgebra.Diagonal{T, V} where V<:AbstractArray{T, 1} where T, AbstractArray{T, N} where N where T) in module LinearAlgebra at /workspace/srcdir/usr/share/julia/stdlib/v1.4/LinearAlgebra/src/diagonal.jl:430 overwritten in module DiffEqBase at /home/pkgeval/.julia/packages/DiffEqBase/runpo/src/init.jl:7.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition ldiv!(AbstractArray{T, N} where N where T, AbstractArray{T, 2} where T, AbstractArray{T, N} where N where T) in module LinearAlgebra at /workspace/srcdir/usr/share/julia/stdlib/v1.4/LinearAlgebra/src/generic.jl:247 overwritten in module DiffEqBase at /home/pkgeval/.julia/packages/DiffEqBase/runpo/src/init.jl:6.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition ldiv!(AbstractArray{T, N} where N where T, LinearAlgebra.Diagonal{T, V} where V<:AbstractArray{T, 1} where T, AbstractArray{T, N} where N where T) in module LinearAlgebra at /workspace/srcdir/usr/share/julia/stdlib/v1.4/LinearAlgebra/src/diagonal.jl:430 overwritten in module DiffEqBase at /home/pkgeval/.julia/packages/DiffEqBase/runpo/src/init.jl:7.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition ldiv!(AbstractArray{T, N} where N where T, AbstractArray{T, 2} where T, AbstractArray{T, N} where N where T) in module LinearAlgebra at /workspace/srcdir/usr/share/julia/stdlib/v1.4/LinearAlgebra/src/generic.jl:247 overwritten in module DiffEqBase at /home/pkgeval/.julia/packages/DiffEqBase/runpo/src/init.jl:6.
** incremental compilation may be fatally broken for this module **
┌ Warning: Replacing docs for `DiffEqOperators.PeriodicBC :: Union{}` in module `DiffEqOperators`
└ @ Base.Docs docs/Docs.jl:229
┌ Warning: Replacing docs for `DiffEqOperators.RobinBC :: Union{}` in module `DiffEqOperators`
└ @ Base.Docs docs/Docs.jl:229
Testing LSODA tests passed