-
Notifications
You must be signed in to change notification settings - Fork 5
/
1.4.0-DEV-efa66facf6.log
153 lines (152 loc) · 12.1 KB
/
1.4.0-DEV-efa66facf6.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
Julia Version 1.4.0-DEV.648
Commit efa66facf6 (2019-12-19 21:21 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed CodecZlib ─────────── v0.6.0
Installed BGZFStreams ───────── v0.3.0
Installed FixedPointNumbers ─── v0.5.3
Installed Compat ────────────── v2.2.0
Installed Libz ──────────────── v1.0.1
Installed ColorTypes ────────── v0.9.0
Installed DataStructures ────── v0.17.6
Installed GenomicFeatures ───── v1.0.0
Installed URIParser ─────────── v0.4.0
Installed BufferedStreams ───── v1.0.0
Installed Combinatorics ─────── v0.7.0
Installed TranscodingStreams ── v0.9.5
Installed BinaryProvider ────── v0.5.8
Installed Codecs ────────────── v0.5.0
Installed Polynomials ───────── v0.6.0
Installed IndexableBitVectors ─ v1.0.0
Installed OrderedCollections ── v1.1.0
Installed Twiddle ───────────── v1.1.1
Installed IntervalTrees ─────── v1.0.0
Installed BioCore ───────────── v2.0.5
Installed YAML ──────────────── v0.3.2
Installed BioSymbols ────────── v3.1.0
Installed RecipesBase ───────── v0.7.0
Installed BioSequences ──────── v1.1.0
Installed Automa ────────────── v0.8.0
Updating `~/.julia/environments/v1.4/Project.toml`
[899a7d2d] + GenomicFeatures v1.0.0
Updating `~/.julia/environments/v1.4/Manifest.toml`
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.8
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[e1450e63] + BufferedStreams v1.0.0
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.9.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[864edb3b] + DataStructures v0.17.6
[53c48c17] + FixedPointNumbers v0.5.3
[899a7d2d] + GenomicFeatures v1.0.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[524e6230] + IntervalTrees v1.0.0
[2ec943e9] + Libz v1.0.1
[bac558e1] + OrderedCollections v1.1.0
[f27b6e38] + Polynomials v0.6.0
[3cdcf5f2] + RecipesBase v0.7.0
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[30578b45] + URIParser v0.4.0
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Path `/home/pkgeval/.julia/packages/CodecZlib/5t9zO` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_kpmMZc/Project.toml`
[944b1d66] + CodecZlib v0.6.0 [`~/.julia/packages/CodecZlib/5t9zO`]
Updating `/tmp/jl_kpmMZc/Manifest.toml`
[944b1d66] ~ CodecZlib v0.6.0 ⇒ v0.6.0 [`~/.julia/packages/CodecZlib/5t9zO`]
Testing GenomicFeatures
┌ Error: Pkg.Types.PkgError("could not find project file in package at /home/pkgeval/.julia/packages/GenomicFeatures/93oqV")
└ @ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1371
ERROR: could not find project file in package at /home/pkgeval/.julia/packages/GenomicFeatures/93oqV
Stacktrace:
[1] pkgerror(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:54
[2] resolve_projectfile!(::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:634
[3] handle_repo_develop!(::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::Bool) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:455
[4] handle_repos_develop!(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}, ::Bool) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:502
[5] develop(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; shared::Bool, strict::Bool, platform::Pkg.BinaryPlatforms.Linux, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:91
[6] develop(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:63
[7] develop(::Array{Pkg.Types.PackageSpec,1}; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:60
[8] develop(::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:60
[9] develop(::Pkg.Types.PackageSpec; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:57
[10] develop at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:57 [inlined]
[11] (::Pkg.Operations.var"#85#87"{String,String,Pkg.Operations.var"#89#90"{Bool,Cmd,Cmd,Nothing,Pkg.Types.Context,Array{String,1},String,Pkg.Types.PackageSpec},String})() at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1373
[12] with_temp_env(::Pkg.Operations.var"#85#87"{String,String,Pkg.Operations.var"#89#90"{Bool,Cmd,Cmd,Nothing,Pkg.Types.Context,Array{String,1},String,Pkg.Types.PackageSpec},String}, ::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1292
[13] (::Pkg.Operations.var"#84#86"{Pkg.Operations.var"#89#90"{Bool,Cmd,Cmd,Nothing,Pkg.Types.Context,Array{String,1},String,Pkg.Types.PackageSpec},Pkg.Types.Context,Pkg.Types.PackageSpec,String,String,Pkg.Types.Project,String})(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1366
[14] mktempdir(::Pkg.Operations.var"#84#86"{Pkg.Operations.var"#89#90"{Bool,Cmd,Cmd,Nothing,Pkg.Types.Context,Array{String,1},String,Pkg.Types.PackageSpec},Pkg.Types.Context,Pkg.Types.PackageSpec,String,String,Pkg.Types.Project,String}, ::String; prefix::String) at ./file.jl:673
[15] mktempdir(::Function, ::String) at ./file.jl:671 (repeats 2 times)
[16] sandbox(::Function, ::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::String, ::String, ::Pkg.Types.Project) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1333
[17] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1458
[18] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:313
[19] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:300
[20] #test#66 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:294 [inlined]
[21] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:294 [inlined]
[22] #test#65 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:293 [inlined]
[23] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:293 [inlined]
[24] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:292
[25] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:292
[26] top-level scope at none:12
caused by [exception 1]
could not find project file in package at /home/pkgeval/.julia/packages/GenomicFeatures/93oqV
Stacktrace:
[1] pkgerror(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:54
[2] resolve_projectfile!(::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:634
[3] handle_repo_develop!(::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::Bool) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:455
[4] handle_repos_develop!(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}, ::Bool) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:502
[5] develop(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; shared::Bool, strict::Bool, platform::Pkg.BinaryPlatforms.Linux, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:91
[6] develop(::Array{Pkg.Types.PackageSpec,1}; kwargs::Base.Iterators.Pairs{Symbol,Bool,Tuple{Symbol},NamedTuple{(:strict,),Tuple{Bool}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:60
[7] develop(::Pkg.Types.PackageSpec; kwargs::Base.Iterators.Pairs{Symbol,Bool,Tuple{Symbol},NamedTuple{(:strict,),Tuple{Bool}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:57
[8] (::Pkg.Operations.var"#85#87"{String,String,Pkg.Operations.var"#89#90"{Bool,Cmd,Cmd,Nothing,Pkg.Types.Context,Array{String,1},String,Pkg.Types.PackageSpec},String})() at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1368
[9] with_temp_env(::Pkg.Operations.var"#85#87"{String,String,Pkg.Operations.var"#89#90"{Bool,Cmd,Cmd,Nothing,Pkg.Types.Context,Array{String,1},String,Pkg.Types.PackageSpec},String}, ::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1292
[10] (::Pkg.Operations.var"#84#86"{Pkg.Operations.var"#89#90"{Bool,Cmd,Cmd,Nothing,Pkg.Types.Context,Array{String,1},String,Pkg.Types.PackageSpec},Pkg.Types.Context,Pkg.Types.PackageSpec,String,String,Pkg.Types.Project,String})(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1366
[11] mktempdir(::Pkg.Operations.var"#84#86"{Pkg.Operations.var"#89#90"{Bool,Cmd,Cmd,Nothing,Pkg.Types.Context,Array{String,1},String,Pkg.Types.PackageSpec},Pkg.Types.Context,Pkg.Types.PackageSpec,String,String,Pkg.Types.Project,String}, ::String; prefix::String) at ./file.jl:673
[12] mktempdir(::Function, ::String) at ./file.jl:671 (repeats 2 times)
[13] sandbox(::Function, ::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::String, ::String, ::Pkg.Types.Project) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1333
[14] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1458
[15] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:313
[16] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:300
[17] #test#66 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:294 [inlined]
[18] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:294 [inlined]
[19] #test#65 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:293 [inlined]
[20] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:293 [inlined]
[21] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:292
[22] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:292
[23] top-level scope at none:12