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1.4.0-DEV-efa66facf6.log
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Julia Version 1.4.0-DEV.648
Commit efa66facf6 (2019-12-19 21:21 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed DataAPI ───────────────────── v1.1.0
Installed Reexport ──────────────────── v0.2.0
Installed Missings ──────────────────── v0.4.3
Installed WeakRefStrings ────────────── v0.6.1
Installed Glob ──────────────────────── v1.2.0
Installed DeIdentification ──────────── v0.8.0
Installed DataStructures ────────────── v0.17.6
Installed TimeZones ─────────────────── v0.10.3
Installed FilePathsBase ─────────────── v0.7.0
Installed Compat ────────────────────── v2.2.0
Installed EzXML ─────────────────────── v0.9.5
Installed SortingAlgorithms ─────────── v0.3.1
Installed InvertedIndices ───────────── v1.0.0
Installed DataFrames ────────────────── v0.20.0
Installed TableTraits ───────────────── v1.0.0
Installed Codecs ────────────────────── v0.5.0
Installed BinaryProvider ────────────── v0.5.8
Installed JSON ──────────────────────── v0.21.0
Installed Parsers ───────────────────── v0.3.10
Installed DataValueInterfaces ───────── v1.0.0
Installed Syslogs ───────────────────── v0.3.0
Installed Mocking ───────────────────── v0.7.0
Installed OrderedCollections ────────── v1.1.0
Installed YAML ──────────────────────── v0.3.2
Installed Tables ────────────────────── v0.2.11
Installed PooledArrays ──────────────── v0.5.2
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed CategoricalArrays ─────────── v0.7.4
Installed Memento ───────────────────── v0.12.1
Installed CSV ───────────────────────── v0.5.20
Updating `~/.julia/environments/v1.4/Project.toml`
[b905b068] + DeIdentification v0.8.0
Updating `~/.julia/environments/v1.4/Manifest.toml`
[b99e7846] + BinaryProvider v0.5.8
[336ed68f] + CSV v0.5.20
[324d7699] + CategoricalArrays v0.7.4
[19ecbf4d] + Codecs v0.5.0
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.20.0
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[b905b068] + DeIdentification v0.8.0
[8f5d6c58] + EzXML v0.9.5
[48062228] + FilePathsBase v0.7.0
[c27321d9] + Glob v1.2.0
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[f28f55f0] + Memento v0.12.1
[e1d29d7a] + Missings v0.4.3
[78c3b35d] + Mocking v0.7.0
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.2
[189a3867] + Reexport v0.2.0
[a2af1166] + SortingAlgorithms v0.3.1
[cea106d9] + Syslogs v0.3.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[f269a46b] + TimeZones v0.10.3
[ea10d353] + WeakRefStrings v0.6.1
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building EzXML ────→ `~/.julia/packages/EzXML/QtGgF/deps/build.log`
Path `/home/pkgeval/.julia/packages/EzXML/QtGgF` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_VID69N/Project.toml`
[8f5d6c58] + EzXML v0.9.5 [`~/.julia/packages/EzXML/QtGgF`]
Updating `/tmp/jl_VID69N/Manifest.toml`
[8f5d6c58] ~ EzXML v0.9.5 ⇒ v0.9.5 [`~/.julia/packages/EzXML/QtGgF`]
Building TimeZones → `~/.julia/packages/TimeZones/pjvlM/deps/build.log`
Path `/home/pkgeval/.julia/packages/TimeZones/pjvlM` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_uKBRHP/Project.toml`
[f269a46b] + TimeZones v0.10.3 [`~/.julia/packages/TimeZones/pjvlM`]
Updating `/tmp/jl_uKBRHP/Manifest.toml`
[f269a46b] ~ TimeZones v0.10.3 ⇒ v0.10.3 [`~/.julia/packages/TimeZones/pjvlM`]
Testing DeIdentification
Path `/home/pkgeval/.julia/packages/DeIdentification/JjCZK` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_jcpG6G/Project.toml`
[b905b068] + DeIdentification v0.8.0 [`~/.julia/packages/DeIdentification/JjCZK`]
Updating `/tmp/jl_jcpG6G/Manifest.toml`
[b905b068] ~ DeIdentification v0.8.0 ⇒ v0.8.0 [`~/.julia/packages/DeIdentification/JjCZK`]
Running sandbox
Status `/tmp/jl_jcpG6G/Project.toml`
[336ed68f] CSV v0.5.20
[a93c6f00] DataFrames v0.20.0
[864edb3b] DataStructures v0.17.6
[b905b068] DeIdentification v0.8.0 [`~/.julia/packages/DeIdentification/JjCZK`]
[c27321d9] Glob v1.2.0
[682c06a0] JSON v0.21.0
[f28f55f0] Memento v0.12.1
[69de0a69] Parsers v0.3.10
[bd369af6] Tables v0.2.11
[ddb6d928] YAML v0.3.2
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[8dfed614] Test
Test Summary: | Pass Total
config creation | 3 3
Test Summary: | Pass Total
create config from csv | 2 2
Test Summary: | Pass Total
rid generation | 2 2
[info | deidentify]: 2019-12-20T02:16:14.333 Logging session for project ehr
[info | deidentify]: 2019-12-20T02:16:15.403 Setting seed for project ehr
[info | deidentify]: 2019-12-20T02:16:15.403 ====================== Processing dx ======================
[info | deidentify]: 2019-12-20T02:16:15.403 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-20T02:16:27.67 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:27.721 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:28.814 ====================== Processing dx_custom_dates ======================
[info | deidentify]: 2019-12-20T02:16:28.815 Reading data from ./data/dx_different_date_format.csv
[info | deidentify]: 2019-12-20T02:16:37.49 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:37.491 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:37.5 ====================== Processing dx_messy_dates ======================
[info | deidentify]: 2019-12-20T02:16:37.5 Reading data from ./data/dx_messy_dates.csv
[info | deidentify]: 2019-12-20T02:16:38.383 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:38.383 Checking for primary column
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value WIKKA
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
[info | deidentify]: 2019-12-20T02:16:40.298 ====================== Processing pat ======================
[info | deidentify]: 2019-12-20T02:16:40.299 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-20T02:16:40.324 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:40.325 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:40.62 ====================== Processing med ======================
[info | deidentify]: 2019-12-20T02:16:40.62 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-20T02:16:41.017 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:41.017 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:41.021 Writing ID dictionaries to ./output/id_dicts_20191220021641.json
[info | deidentify]: 2019-12-20T02:16:41.344 Writing dateshift values to ./output/dateshifts_20191220021641.json
[info | deidentify]: 2019-12-20T02:16:41.539 Writing salt values to ./output/salts_20191220021641.json
Test Summary: | Pass Total
integration tests | 15 15
[info | deidentify]: 2019-12-20T02:16:54.338 Logging session for project ehr
[info | deidentify]: 2019-12-20T02:16:54.339 Setting seed for project ehr
[info | deidentify]: 2019-12-20T02:16:54.339 ====================== Processing dx ======================
[info | deidentify]: 2019-12-20T02:16:54.339 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-20T02:16:54.342 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:54.343 Checking for primary column
Test Summary: | Pass Total
primary identifiter | 1 1
[info | deidentify]: 2019-12-20T02:16:54.525 Logging session for project ehr
[info | deidentify]: 2019-12-20T02:16:54.525 Setting seed for project ehr
[info | deidentify]: 2019-12-20T02:16:54.526 ====================== Processing dx ======================
[info | deidentify]: 2019-12-20T02:16:54.526 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-20T02:16:54.528 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:54.528 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:54.538 ====================== Processing dx_custom_dates ======================
[info | deidentify]: 2019-12-20T02:16:54.539 Reading data from ./data/dx_different_date_format.csv
[info | deidentify]: 2019-12-20T02:16:54.541 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:54.542 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:54.552 ====================== Processing dx_messy_dates ======================
[info | deidentify]: 2019-12-20T02:16:54.552 Reading data from ./data/dx_messy_dates.csv
[info | deidentify]: 2019-12-20T02:16:54.555 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:54.556 Checking for primary column
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value WIKKA
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
[info | deidentify]: 2019-12-20T02:16:54.571 ====================== Processing pat ======================
[info | deidentify]: 2019-12-20T02:16:54.572 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-20T02:16:54.574 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:54.574 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:54.667 ====================== Processing med ======================
[info | deidentify]: 2019-12-20T02:16:54.668 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-20T02:16:54.671 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:54.671 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:54.675 Writing ID dictionaries to ./output/id_dicts_20191220021654.json
[info | deidentify]: 2019-12-20T02:16:54.676 Writing dateshift values to ./output/dateshifts_20191220021654.json
[info | deidentify]: 2019-12-20T02:16:54.677 Writing salt values to ./output/salts_20191220021654.json
[info | deidentify]: 2019-12-20T02:16:54.678 Logging session for project ehr
[info | deidentify]: 2019-12-20T02:16:54.678 Setting seed for project ehr
[info | deidentify]: 2019-12-20T02:16:54.679 ====================== Processing dx ======================
[info | deidentify]: 2019-12-20T02:16:54.679 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-20T02:16:54.682 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:54.682 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:54.692 ====================== Processing dx_custom_dates ======================
[info | deidentify]: 2019-12-20T02:16:54.693 Reading data from ./data/dx_different_date_format.csv
[info | deidentify]: 2019-12-20T02:16:54.696 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:54.696 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:54.706 ====================== Processing dx_messy_dates ======================
[info | deidentify]: 2019-12-20T02:16:54.707 Reading data from ./data/dx_messy_dates.csv
[info | deidentify]: 2019-12-20T02:16:54.71 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:54.71 Checking for primary column
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value NULL
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
┌ Warning: Could not date shift non-date value WIKKA
└ @ DeIdentification ~/.julia/packages/DeIdentification/JjCZK/src/de_identify.jl:183
[info | deidentify]: 2019-12-20T02:16:54.725 ====================== Processing pat ======================
[info | deidentify]: 2019-12-20T02:16:54.725 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-20T02:16:54.728 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:54.728 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:54.826 ====================== Processing med ======================
[info | deidentify]: 2019-12-20T02:16:54.826 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-20T02:16:54.828 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:54.828 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:54.832 Writing ID dictionaries to ./output/id_dicts_20191220021654.json
[info | deidentify]: 2019-12-20T02:16:54.833 Writing dateshift values to ./output/dateshifts_20191220021654.json
[info | deidentify]: 2019-12-20T02:16:54.833 Writing salt values to ./output/salts_20191220021654.json
[info | deidentify]: 2019-12-20T02:16:54.834 Logging session for project ehr
[info | deidentify]: 2019-12-20T02:16:54.834 Setting seed for project ehr
[info | deidentify]: 2019-12-20T02:16:54.834 ====================== Processing dx ======================
[info | deidentify]: 2019-12-20T02:16:54.834 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-20T02:16:54.837 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:54.837 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:54.923 ====================== Processing pat ======================
[info | deidentify]: 2019-12-20T02:16:54.923 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-20T02:16:54.925 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:54.925 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:55.006 ====================== Processing med ======================
[info | deidentify]: 2019-12-20T02:16:55.007 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-20T02:16:55.008 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:55.008 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:55.012 Writing ID dictionaries to ./output/id_dicts_20191220021655.json
[info | deidentify]: 2019-12-20T02:16:55.012 Writing dateshift values to ./output/dateshifts_20191220021655.json
[info | deidentify]: 2019-12-20T02:16:55.013 Writing salt values to ./output/salts_20191220021655.json
Test Summary: | Pass Total
hash seeding | 2 2
[info | deidentify]: 2019-12-20T02:16:55.171 Logging session for project ehr
[info | deidentify]: 2019-12-20T02:16:55.172 Setting seed for project ehr
[info | deidentify]: 2019-12-20T02:16:55.172 ====================== Processing dx ======================
[info | deidentify]: 2019-12-20T02:16:55.172 Reading data from ./data/dx.csv
[info | deidentify]: 2019-12-20T02:16:55.175 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:55.175 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:55.184 ====================== Processing pat ======================
[info | deidentify]: 2019-12-20T02:16:55.185 Reading data from ./data/pat.csv
[info | deidentify]: 2019-12-20T02:16:55.186 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:55.187 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:55.269 ====================== Processing med ======================
[info | deidentify]: 2019-12-20T02:16:55.269 Reading data from ./data/med.csv
[info | deidentify]: 2019-12-20T02:16:55.27 Renaming file columns
[info | deidentify]: 2019-12-20T02:16:55.271 Checking for primary column
[info | deidentify]: 2019-12-20T02:16:55.274 Writing ID dictionaries to ./path/to/new/output/id_dicts_20191220021655.json
[info | deidentify]: 2019-12-20T02:16:55.275 Writing dateshift values to ./path/to/new/output/dateshifts_20191220021655.json
[info | deidentify]: 2019-12-20T02:16:55.275 Writing salt values to ./path/to/new/output/salts_20191220021655.json
Test Summary: | Pass Total
create output directories | 2 2
Testing DeIdentification tests passed