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1.4.0-DEV-81899bf99e.log
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Julia Version 1.4.0-DEV.634
Commit 81899bf99e (2019-12-18 10:13 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed Missings ───────────── v0.4.3
Installed OceanGrids ─────────── v0.1.4
Installed Distances ──────────── v0.8.2
Installed WorldOceanAtlasTools ─ v0.3.5
Installed NearestNeighbors ───── v0.4.4
Installed OrderedCollections ─── v1.1.0
Installed Unitful ────────────── v0.18.0
Installed StatsBase ──────────── v0.32.0
Installed Parsers ────────────── v0.3.10
Installed DataAPI ────────────── v1.1.0
Installed BinDeps ────────────── v0.8.10
Installed Reexport ───────────── v0.2.0
Installed BinaryProvider ─────── v0.5.8
Installed CFTime ─────────────── v0.0.3
Installed VersionParsing ─────── v1.2.0
Installed Compat ─────────────── v2.2.0
Installed Conda ──────────────── v1.3.0
Installed SortingAlgorithms ──── v0.3.1
Installed Match ──────────────── v1.1.0
Installed CondaBinDeps ───────── v0.1.0
Installed IniFile ────────────── v0.5.0
Installed DataStructures ─────── v0.17.6
Installed HTTP ───────────────── v0.8.8
Installed ConstructionBase ───── v1.0.0
Installed NCDatasets ─────────── v0.9.5
Installed URIParser ──────────── v0.4.0
Installed StaticArrays ───────── v0.12.1
Installed JSON ───────────────── v0.21.0
Installed DataDeps ───────────── v0.7.1
Installed MbedTLS ────────────── v0.7.0
Updating `~/.julia/environments/v1.4/Project.toml`
[04f20302] + WorldOceanAtlasTools v0.3.5
Updating `~/.julia/environments/v1.4/Manifest.toml`
[9e28174c] + BinDeps v0.8.10
[b99e7846] + BinaryProvider v0.5.8
[179af706] + CFTime v0.0.3
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[a9693cdc] + CondaBinDeps v0.1.0
[187b0558] + ConstructionBase v1.0.0
[9a962f9c] + DataAPI v1.1.0
[124859b0] + DataDeps v0.7.1
[864edb3b] + DataStructures v0.17.6
[b4f34e82] + Distances v0.8.2
[cd3eb016] + HTTP v0.8.8
[83e8ac13] + IniFile v0.5.0
[682c06a0] + JSON v0.21.0
[7eb4fadd] + Match v1.1.0
[739be429] + MbedTLS v0.7.0
[e1d29d7a] + Missings v0.4.3
[85f8d34a] + NCDatasets v0.9.5
[b8a86587] + NearestNeighbors v0.4.4
[cfe838f4] + OceanGrids v0.1.4
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[189a3867] + Reexport v0.2.0
[a2af1166] + SortingAlgorithms v0.3.1
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[30578b45] + URIParser v0.4.0
[1986cc42] + Unitful v0.18.0
[81def892] + VersionParsing v1.2.0
[04f20302] + WorldOceanAtlasTools v0.3.5
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ─────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Path `/home/pkgeval/.julia/packages/Conda/kLXeC` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_TCR390/Project.toml`
[8f4d0f93] + Conda v1.3.0 [`~/.julia/packages/Conda/kLXeC`]
Updating `/tmp/jl_TCR390/Manifest.toml`
[8f4d0f93] ~ Conda v1.3.0 ⇒ v1.3.0 [`~/.julia/packages/Conda/kLXeC`]
Building NCDatasets → `~/.julia/packages/NCDatasets/uW2kc/deps/build.log`
Path `/home/pkgeval/.julia/packages/NCDatasets/uW2kc` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_0pZCA8/Project.toml`
[85f8d34a] + NCDatasets v0.9.5 [`~/.julia/packages/NCDatasets/uW2kc`]
Updating `/tmp/jl_0pZCA8/Manifest.toml`
[85f8d34a] ~ NCDatasets v0.9.5 ⇒ v0.9.5 [`~/.julia/packages/NCDatasets/uW2kc`]
Building MbedTLS ───→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Path `/home/pkgeval/.julia/packages/MbedTLS/a1JFn` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_h9TVrQ/Project.toml`
[739be429] + MbedTLS v0.7.0 [`~/.julia/packages/MbedTLS/a1JFn`]
Updating `/tmp/jl_h9TVrQ/Manifest.toml`
[739be429] ~ MbedTLS v0.7.0 ⇒ v0.7.0 [`~/.julia/packages/MbedTLS/a1JFn`]
Testing WorldOceanAtlasTools
Path `/home/pkgeval/.julia/packages/WorldOceanAtlasTools/ruL4q` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_Mu83Bj/Project.toml`
[04f20302] + WorldOceanAtlasTools v0.3.5 [`~/.julia/packages/WorldOceanAtlasTools/ruL4q`]
Updating `/tmp/jl_Mu83Bj/Manifest.toml`
[04f20302] ~ WorldOceanAtlasTools v0.3.5 ⇒ v0.3.5 [`~/.julia/packages/WorldOceanAtlasTools/ruL4q`]
Running sandbox
Status `/tmp/jl_Mu83Bj/Project.toml`
[124859b0] DataDeps v0.7.1
[7eb4fadd] Match v1.1.0
[85f8d34a] NCDatasets v0.9.5
[b8a86587] NearestNeighbors v0.4.4
[cfe838f4] OceanGrids v0.1.4
[2913bbd2] StatsBase v0.32.0
[1986cc42] Unitful v0.18.0
[04f20302] WorldOceanAtlasTools v0.3.5 [`~/.julia/packages/WorldOceanAtlasTools/ruL4q`]
[8dfed614] Test
Registering World Ocean Atlas data with DataDeps
┌ Warning: You are about to use World Ocean Atlas data.
│ Please cite the following corresponding reference(s):
│
│ Garcia, H. E., K. Weathers, C. R. Paver, I. Smolyar, T. P. Boyer, R. A. Locarnini, M. M. Zweng, A. V. Mishonov, O. K. Baranova, D. Seidov, and J. R. Reagan, 2018. World Ocean Atlas 2018, Volume 4: Dissolved Inorganic Nutrients (phosphate, nitrate and nitrate+nitrite, silicate). A. Mishonov Technical Ed.; in preparation.)
└ @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/ruL4q/src/functions.jl:151
┌ Warning: Checksum not provided, add to the Datadep Registration the following hash line
│ hash = "278ffd1a2d615bc2f0cc79b5608d1b47c1be722fe251ff9f1e344c966452965e"
└ @ DataDeps ~/.julia/packages/DataDeps/ai3FE/src/verification.jl:44
Getting the 3D field of WOA18 Annual phosphate 73x36 data
Registering World Ocean Atlas data with DataDeps
┌ Warning: You are about to use World Ocean Atlas data.
│ Please cite the following corresponding reference(s):
│
│ Garcia, H. E., K. Weathers, C. R. Paver, I. Smolyar, T. P. Boyer, R. A. Locarnini, M. M. Zweng, A. V. Mishonov, O. K. Baranova, D. Seidov, and J. R. Reagan, 2018. World Ocean Atlas 2018, Volume 4: Dissolved Inorganic Nutrients (phosphate, nitrate and nitrate+nitrite, silicate). A. Mishonov Technical Ed.; in preparation.)
└ @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/ruL4q/src/functions.jl:151
┌ Warning: Over-writing registration of the datadep
│ name = "WOA18_Annual_phosphate_73x36"
└ @ DataDeps ~/.julia/packages/DataDeps/ai3FE/src/registration.jl:8
Rearranging data
Reading NetCDF file
Rearranging data
Reading NetCDF file
Rearranging data
Filtering data
Registering World Ocean Atlas data with DataDeps
┌ Warning: You are about to use World Ocean Atlas data.
│ Please cite the following corresponding reference(s):
│
│ Garcia, H. E., K. Weathers, C. R. Paver, I. Smolyar, T. P. Boyer, R. A. Locarnini, M. M. Zweng, A. V. Mishonov, O. K. Baranova, D. Seidov, and J. R. Reagan, 2018. World Ocean Atlas 2018, Volume 4: Dissolved Inorganic Nutrients (phosphate, nitrate and nitrate+nitrite, silicate). A. Mishonov Technical Ed.; in preparation.)
└ @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/ruL4q/src/functions.jl:151
┌ Warning: Over-writing registration of the datadep
│ name = "WOA18_Annual_phosphate_73x36"
└ @ DataDeps ~/.julia/packages/DataDeps/ai3FE/src/registration.jl:8
Reading NetCDF file
Rearranging data
Filtering data
Averaging data over each grid box
Setting μ = 0 and σ² = ∞ where no obs
Setting a realistic minimum for σ²
fit_to_grid: Error During Test at /home/pkgeval/.julia/packages/WorldOceanAtlasTools/ruL4q/test/test_functions.jl:35
Got exception outside of a @test
DimensionMismatch("The first array has axes (Base.OneTo(90), Base.OneTo(180), Base.OneTo(24)) that do not match the axes of the second, (Base.OneTo(388800),). You might want to use `dot(vec(x), vec(y))` if `length(x) == length(y)`.")
Stacktrace:
[1] dot(::Array{Float64,3}, ::Array{Float64,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/LinearAlgebra/src/blas.jl:333
[2] dot(::Array{Float64,3}, ::Array{Float64,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/LinearAlgebra/src/matmul.jl:9
[3] sum(::Array{Float64,3}, ::StatsBase.Weights{Float64,Float64,Array{Float64,1}}) at /home/pkgeval/.julia/packages/StatsBase/DyWPR/src/weights.jl:280
[4] _mean(::Array{Float64,3}, ::StatsBase.Weights{Float64,Float64,Array{Float64,1}}, ::Nothing) at /home/pkgeval/.julia/packages/StatsBase/DyWPR/src/weights.jl:528
[5] mean(::Array{Float64,3}, ::StatsBase.Weights{Float64,Float64,Array{Float64,1}}; dims::Nothing) at /home/pkgeval/.julia/packages/StatsBase/DyWPR/src/weights.jl:526
[6] mean(::Array{Float64,3}, ::StatsBase.Weights{Float64,Float64,Array{Float64,1}}) at /home/pkgeval/.julia/packages/StatsBase/DyWPR/src/weights.jl:526
[7] mean_and_variance_gridded_3d_field(::OceanRectilinearGrid, ::Array{Union{Missing, Float32},3}, ::Array{Float64,1}, ::Array{Float64,1}, ::Array{Float64,1}) at /home/pkgeval/.julia/packages/WorldOceanAtlasTools/ruL4q/src/functions.jl:96
[8] fit_to_grid(::OceanRectilinearGrid, ::Int64, ::String, ::Int64, ::String, ::String) at /home/pkgeval/.julia/packages/WorldOceanAtlasTools/ruL4q/src/functions.jl:132
[9] macro expansion at /home/pkgeval/.julia/packages/WorldOceanAtlasTools/ruL4q/test/test_functions.jl:37 [inlined]
[10] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[11] macro expansion at /home/pkgeval/.julia/packages/WorldOceanAtlasTools/ruL4q/test/test_functions.jl:36 [inlined]
[12] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1116 [inlined]
[13] top-level scope at /home/pkgeval/.julia/packages/WorldOceanAtlasTools/ruL4q/test/test_functions.jl:4
[14] include(::String) at ./client.jl:439
[15] top-level scope at /home/pkgeval/.julia/packages/WorldOceanAtlasTools/ruL4q/test/runtests.jl:13
[16] include(::String) at ./client.jl:439
[17] top-level scope at none:6
[18] eval(::Module, ::Any) at ./boot.jl:331
[19] exec_options(::Base.JLOptions) at ./client.jl:264
[20] _start() at ./client.jl:484
Test Summary: | Pass Error Total
Testing functions | 15 1 16
get_3D_field | 2 2
get_gridded_3D_field | 8 8
filter_gridded_3D_field | 4 4
fit_to_grid | 1 1
ERROR: LoadError: LoadError: Some tests did not pass: 15 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/WorldOceanAtlasTools/ruL4q/test/test_functions.jl:3
in expression starting at /home/pkgeval/.julia/packages/WorldOceanAtlasTools/ruL4q/test/runtests.jl:13
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/WorldOceanAtlasTools/ruL4q/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/WorldOceanAtlasTools/ruL4q/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package WorldOceanAtlasTools errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1475
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:300
[5] #test#66 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:294 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:293 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:292
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:292
[11] top-level scope at none:12