-
Notifications
You must be signed in to change notification settings - Fork 5
/
1.4.0-DEV-81899bf99e.log
230 lines (227 loc) · 12.6 KB
/
1.4.0-DEV-81899bf99e.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
Julia Version 1.4.0-DEV.634
Commit 81899bf99e (2019-12-18 10:13 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed MKL_jll ────────────── v2019.0.117+0
Installed PDMats ─────────────── v0.9.10
Installed FFTW_jll ───────────── v3.3.9+3
Installed OrderedCollections ─── v1.1.0
Installed CommonSubexpressions ─ v0.2.0
Installed StatsBase ──────────── v0.32.0
Installed BlockArrays ────────── v0.10.2
Installed Stheno ─────────────── v0.5.0
Installed AbstractFFTs ───────── v0.5.0
Installed RecipesBase ────────── v0.7.0
Installed Missings ───────────── v0.4.3
Installed Rmath ──────────────── v0.6.0
Installed BinDeps ────────────── v1.0.0
Installed Distances ──────────── v0.8.2
Installed DiffResults ────────── v1.0.1
Installed Reexport ───────────── v0.2.0
Installed QuadGK ─────────────── v2.3.1
Installed StatsFuns ──────────── v0.9.3
Installed DataAPI ────────────── v1.1.0
Installed MacroTools ─────────── v0.5.3
Installed FillArrays ─────────── v0.8.2
Installed Requires ───────────── v0.5.2
Installed BinaryProvider ─────── v0.5.8
Installed IntelOpenMP_jll ────── v2018.0.3+0
Installed Arpack_jll ─────────── v3.5.0+2
Installed SortingAlgorithms ──── v0.3.1
Installed DataStructures ─────── v0.17.6
Installed Zygote ─────────────── v0.4.1
Installed Arpack ─────────────── v0.4.0
Installed Distributions ──────── v0.21.11
Installed OpenBLAS_jll ───────── v0.3.7+1
Installed NNlib ──────────────── v0.6.0
Installed URIParser ──────────── v0.4.0
Installed TimerOutputs ───────── v0.5.3
Installed IRTools ────────────── v0.3.0
Installed ZygoteRules ────────── v0.2.0
Installed NaNMath ────────────── v0.3.3
Installed StaticArrays ───────── v0.12.1
Installed SpecialFunctions ───── v0.8.0
Installed ForwardDiff ────────── v0.10.8
Installed DiffRules ──────────── v0.1.0
Installed FFTW ───────────────── v1.2.0
Updating `~/.julia/environments/v1.4/Project.toml`
[8188c328] + Stheno v0.5.0
Updating `~/.julia/environments/v1.4/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[9e28174c] + BinDeps v1.0.0
[b99e7846] + BinaryProvider v0.5.8
[8e7c35d0] + BlockArrays v0.10.2
[bbf7d656] + CommonSubexpressions v0.2.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.6
[163ba53b] + DiffResults v1.0.1
[b552c78f] + DiffRules v0.1.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.11
[7a1cc6ca] + FFTW v1.2.0
[f5851436] + FFTW_jll v3.3.9+3
[1a297f60] + FillArrays v0.8.2
[f6369f11] + ForwardDiff v0.10.8
[7869d1d1] + IRTools v0.3.0
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[856f044c] + MKL_jll v2019.0.117+0
[1914dd2f] + MacroTools v0.5.3
[e1d29d7a] + Missings v0.4.3
[872c559c] + NNlib v0.6.0
[77ba4419] + NaNMath v0.3.3
[4536629a] + OpenBLAS_jll v0.3.7+1
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[1fd47b50] + QuadGK v2.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.6.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[8188c328] + Stheno v0.5.0
[a759f4b9] + TimerOutputs v0.5.3
[30578b45] + URIParser v0.4.0
[e88e6eb3] + Zygote v0.4.1
[700de1a5] + ZygoteRules v0.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Rmath ───────────→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
Path `/home/pkgeval/.julia/packages/Rmath/BoBag` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_q5EZCB/Project.toml`
[79098fc4] + Rmath v0.6.0 [`~/.julia/packages/Rmath/BoBag`]
Updating `/tmp/jl_q5EZCB/Manifest.toml`
[79098fc4] ~ Rmath v0.6.0 ⇒ v0.6.0 [`~/.julia/packages/Rmath/BoBag`]
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Path `/home/pkgeval/.julia/packages/SpecialFunctions/ne2iw` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_faEWon/Project.toml`
[276daf66] + SpecialFunctions v0.8.0 [`~/.julia/packages/SpecialFunctions/ne2iw`]
Updating `/tmp/jl_faEWon/Manifest.toml`
[276daf66] ~ SpecialFunctions v0.8.0 ⇒ v0.8.0 [`~/.julia/packages/SpecialFunctions/ne2iw`]
Building FFTW ────────────→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Path `/home/pkgeval/.julia/packages/FFTW/qqcBj` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_qBeOIp/Project.toml`
[7a1cc6ca] + FFTW v1.2.0 [`~/.julia/packages/FFTW/qqcBj`]
Updating `/tmp/jl_qBeOIp/Manifest.toml`
[7a1cc6ca] ~ FFTW v1.2.0 ⇒ v1.2.0 [`~/.julia/packages/FFTW/qqcBj`]
Testing Stheno
Path `/home/pkgeval/.julia/packages/Stheno/j89z0` exists and looks like the correct package. Using existing path.
Installed FiniteDifferences ─ v0.9.0
Updating `/tmp/jl_N0r9nB/Project.toml`
[26cc04aa] + FiniteDifferences v0.9.0
[8188c328] + Stheno v0.5.0 [`~/.julia/packages/Stheno/j89z0`]
Updating `/tmp/jl_N0r9nB/Manifest.toml`
[26cc04aa] + FiniteDifferences v0.9.0
[8188c328] ~ Stheno v0.5.0 ⇒ v0.5.0 [`~/.julia/packages/Stheno/j89z0`]
Running sandbox
Status `/tmp/jl_N0r9nB/Project.toml`
[8e7c35d0] BlockArrays v0.10.2
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.11
[26cc04aa] FiniteDifferences v0.9.0
[1914dd2f] MacroTools v0.5.3
[3cdcf5f2] RecipesBase v0.7.0
[8188c328] Stheno v0.5.0 [`~/.julia/packages/Stheno/j89z0`]
[a759f4b9] TimerOutputs v0.5.3
[e88e6eb3] Zygote v0.4.1
[700de1a5] ZygoteRules v0.2.0
[37e2e46d] LinearAlgebra
[9a3f8284] Random
[10745b16] Statistics
[8dfed614] Test
┌ Warning: Deprecated syntax `(;)` at /home/pkgeval/.julia/packages/IRTools/Fl3dY/src/passes/relooper.jl:148.
│ Use `begin end` instead.
└ @ ~/.julia/packages/IRTools/Fl3dY/src/passes/relooper.jl:148
┌ Warning: Deprecated syntax `(;)` at /home/pkgeval/.julia/packages/IRTools/Fl3dY/src/passes/relooper.jl:157.
│ Use `begin end` instead.
└ @ ~/.julia/packages/IRTools/Fl3dY/src/passes/relooper.jl:157
┌ Warning: Deprecated syntax `(;)` at /home/pkgeval/.julia/packages/IRTools/Fl3dY/src/passes/relooper.jl:167.
│ Use `begin end` instead.
└ @ ~/.julia/packages/IRTools/Fl3dY/src/passes/relooper.jl:167
┌ Warning: Deprecated syntax `(;)` at /home/pkgeval/.julia/packages/Zygote/8dVxG/src/lib/grad.jl:3.
│ Use `begin end` instead.
└ @ ~/.julia/packages/Zygote/8dVxG/src/lib/grad.jl:3
WARNING: Method definition logabsdet(LinearAlgebra.Diagonal{T, V} where V<:AbstractArray{T, 1} where T) in module LinearAlgebra at /workspace/srcdir/usr/share/julia/stdlib/v1.4/LinearAlgebra/src/diagonal.jl:685 overwritten in module Stheno at /home/pkgeval/.julia/packages/Stheno/j89z0/src/util/block_arrays/diagonal.jl:202.
** incremental compilation may be fatally broken for this module **
ERROR: LoadError: InitError: LoadError: Can't differentiate loopinfo expression
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] macro expansion at ./simdloop.jl:79 [inlined]
[3] copyto! at ./broadcast.jl:908 [inlined]
[4] copyto! at ./broadcast.jl:863 [inlined]
[5] (::typeof(∂(copyto!)))(::FillArrays.Fill{Float32,1,Tuple{Base.OneTo{Int64}}}) at /home/pkgeval/.julia/packages/Zygote/8dVxG/src/compiler/interface2.jl:0
[6] copy at ./broadcast.jl:839 [inlined]
[7] materialize at ./broadcast.jl:819 [inlined]
[8] #1685 at /home/pkgeval/.julia/packages/Zygote/8dVxG/src/precompile.jl:22 [inlined]
[9] (::typeof(∂(#1685)))(::Float32) at /home/pkgeval/.julia/packages/Zygote/8dVxG/src/compiler/interface2.jl:0
[10] (::Zygote.var"#26#27"{typeof(∂(#1685))})(::Float32) at /home/pkgeval/.julia/packages/Zygote/8dVxG/src/compiler/interface.jl:38
[11] gradient(::Function, ::Array{Float64,1}) at /home/pkgeval/.julia/packages/Zygote/8dVxG/src/compiler/interface.jl:47
[12] top-level scope at /home/pkgeval/.julia/packages/Zygote/8dVxG/src/precompile.jl:22
[13] include(::Module, ::String) at ./Base.jl:377
[14] include at /home/pkgeval/.julia/packages/Zygote/8dVxG/src/Zygote.jl:1 [inlined]
[15] precompile at /home/pkgeval/.julia/packages/Zygote/8dVxG/src/Zygote.jl:43 [inlined]
[16] (::Zygote.var"#1611#1612")() at /home/pkgeval/.julia/packages/Requires/9Jse8/src/init.jl:11
[17] __init__() at /home/pkgeval/.julia/packages/Requires/9Jse8/src/init.jl:18
[18] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:690
[19] _require_search_from_serialized(::Base.PkgId, ::String) at ./loading.jl:774
[20] _tryrequire_from_serialized(::Base.PkgId, ::UInt64, ::Nothing) at ./loading.jl:705
[21] _require_from_serialized(::String) at ./loading.jl:736
[22] _require(::Base.PkgId) at ./loading.jl:1032
[23] require(::Base.PkgId) at ./loading.jl:920
[24] require(::Module, ::Symbol) at ./loading.jl:915
[25] include(::String) at ./client.jl:439
[26] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/Zygote/8dVxG/src/precompile.jl:22
during initialization of module Zygote
in expression starting at /home/pkgeval/.julia/packages/Stheno/j89z0/test/runtests.jl:1
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/Stheno/j89z0/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/Stheno/j89z0/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package Stheno errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1475
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:300
[5] #test#66 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:294 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:293 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:292
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:292
[11] top-level scope at none:12