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1.4.0-DEV-81899bf99e.log
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Julia Version 1.4.0-DEV.634
Commit 81899bf99e (2019-12-18 10:13 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed Missings ──────────────────── v0.4.3
Installed RecipesBase ───────────────── v0.7.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed OrderedCollections ────────── v1.1.0
Installed MLInterpret ───────────────── v0.1.2
Installed Polynomials ───────────────── v0.6.0
Installed BinDeps ───────────────────── v0.8.10
Installed StatsBase ─────────────────── v0.32.0
Installed Requires ──────────────────── v0.5.2
Installed PandasLite ────────────────── v0.1.2
Installed Parsers ───────────────────── v0.3.10
Installed DataAPI ───────────────────── v1.1.0
Installed MacroTools ────────────────── v0.5.3
Installed VersionParsing ────────────── v1.2.0
Installed Conda ─────────────────────── v1.3.0
Installed Combinatorics ─────────────── v0.7.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed TableTraitsUtils ──────────── v1.0.1
Installed URIParser ─────────────────── v0.4.0
Installed PyCall ────────────────────── v1.91.2
Installed Compat ────────────────────── v2.2.0
Installed DataStructures ────────────── v0.17.6
Installed DataValueInterfaces ───────── v1.0.0
Installed DataValues ────────────────── v0.4.12
Installed ProgressMeter ─────────────── v1.2.0
Installed TableTraits ───────────────── v1.0.0
Installed JSON ──────────────────────── v0.21.0
Installed PyCallUtils ───────────────── v0.2.1
Installed BSON ──────────────────────── v0.2.4
Updating `~/.julia/environments/v1.4/Project.toml`
[8be67bde] + MLInterpret v0.1.2
Updating `~/.julia/environments/v1.4/Manifest.toml`
[fbb218c0] + BSON v0.2.4
[9e28174c] + BinDeps v0.8.10
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[8be67bde] + MLInterpret v0.1.2
[1914dd2f] + MacroTools v0.5.3
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.1.0
[f5117550] + PandasLite v0.1.2
[69de0a69] + Parsers v0.3.10
[f27b6e38] + Polynomials v0.6.0
[92933f4c] + ProgressMeter v1.2.0
[438e738f] + PyCall v1.91.2
[02651160] + PyCallUtils v0.2.1
[3cdcf5f2] + RecipesBase v0.7.0
[ae029012] + Requires v0.5.2
[a2af1166] + SortingAlgorithms v0.3.1
[2913bbd2] + StatsBase v0.32.0
[3783bdb8] + TableTraits v1.0.0
[382cd787] + TableTraitsUtils v1.0.1
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ──────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Path `/home/pkgeval/.julia/packages/Conda/kLXeC` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_cbjkFQ/Project.toml`
[8f4d0f93] + Conda v1.3.0 [`~/.julia/packages/Conda/kLXeC`]
Updating `/tmp/jl_cbjkFQ/Manifest.toml`
[8f4d0f93] ~ Conda v1.3.0 ⇒ v1.3.0 [`~/.julia/packages/Conda/kLXeC`]
Building PyCall ─────→ `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Path `/home/pkgeval/.julia/packages/PyCall/ttONZ` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_TdW6KO/Project.toml`
[438e738f] + PyCall v1.91.2 [`~/.julia/packages/PyCall/ttONZ`]
Updating `/tmp/jl_TdW6KO/Manifest.toml`
[438e738f] ~ PyCall v1.91.2 ⇒ v1.91.2 [`~/.julia/packages/PyCall/ttONZ`]
Building MLInterpret → `~/.julia/packages/MLInterpret/dR26R/deps/build.log`
Path `/home/pkgeval/.julia/packages/MLInterpret/dR26R` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_4mp7vf/Project.toml`
[8be67bde] + MLInterpret v0.1.2 [`~/.julia/packages/MLInterpret/dR26R`]
Updating `/tmp/jl_4mp7vf/Manifest.toml`
[8be67bde] ~ MLInterpret v0.1.2 ⇒ v0.1.2 [`~/.julia/packages/MLInterpret/dR26R`]
┌ Error: Error building `MLInterpret`:
│
│ WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
│
│ Reading package lists...
│ E: List directory /var/lib/apt/lists/partial is missing. - Acquire (13: Permission denied)
│ E: Could not open lock file /var/lib/dpkg/lock-frontend - open (13: Permission denied)
│ E: Unable to acquire the dpkg frontend lock (/var/lib/dpkg/lock-frontend), are you root?
│ ERROR: LoadError: failed process: Process(`apt-get install -y g++`, ProcessExited(100)) [100]
│
│ Stacktrace:
│ [1] pipeline_error at ./process.jl:525 [inlined]
│ [2] run(::Cmd; wait::Bool) at ./process.jl:440
│ [3] run(::Cmd) at ./process.jl:438
│ [4] top-level scope at /home/pkgeval/.julia/packages/MLInterpret/dR26R/deps/build.jl:32
│ [5] include(::String) at ./client.jl:439
│ [6] top-level scope at none:5
│ in expression starting at /home/pkgeval/.julia/packages/MLInterpret/dR26R/deps/build.jl:27
│ Installing dependency g++ via `apt-get install g++`:
└ @ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:892
Testing MLInterpret
Path `/home/pkgeval/.julia/packages/MLInterpret/dR26R` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_RINwYA/Project.toml`
[8be67bde] + MLInterpret v0.1.2 [`~/.julia/packages/MLInterpret/dR26R`]
Updating `/tmp/jl_RINwYA/Manifest.toml`
[8be67bde] ~ MLInterpret v0.1.2 ⇒ v0.1.2 [`~/.julia/packages/MLInterpret/dR26R`]
Running sandbox
Status `/tmp/jl_RINwYA/Project.toml`
[9e28174c] BinDeps v0.8.10
[861a8166] Combinatorics v0.7.0
[8be67bde] MLInterpret v0.1.2 [`~/.julia/packages/MLInterpret/dR26R`]
[f5117550] PandasLite v0.1.2
[92933f4c] ProgressMeter v1.2.0
[438e738f] PyCall v1.91.2
[02651160] PyCallUtils v0.2.1
[2913bbd2] StatsBase v0.32.0
[8ba89e20] Distributed
[44cfe95a] Pkg
[9a3f8284] Random
[10745b16] Statistics
WARNING: Method definition getindex(PyCall.PyObject, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:335 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:45.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:344 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:46.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:48.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:49.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:50.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:51.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:52.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:53.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition jlwrap_iterator(Any) in module PyCall at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/pyiterator.jl:144 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:56.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition jlwrap_iterator(Any) in module PyCall at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/pyiterator.jl:144 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:56.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:48.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:49.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:335 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:45.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:50.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:51.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:52.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:344 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:46.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:53.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(Base.Colon) in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:38 overwritten in module PandasLite at /home/pkgeval/.julia/packages/PandasLite/qvpze/src/PandasLite.jl:115.
** incremental compilation may be fatally broken for this module **
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package pandas could not be found by pyimport. Usually this means
that you did not install pandas in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the pandas module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the pandas module, you can use `pyimport_conda("pandas", PKG)`,
where PKG is the Anaconda package the contains the module pandas,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'pandas'",)
Stacktrace:
[1] pyimport(::String) at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] pyimport_conda at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:701 [inlined]
[4] __init__() at /home/pkgeval/.julia/packages/PandasLite/qvpze/src/PandasLite.jl:18
[5] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:690
[6] _require_from_serialized(::String) at ./loading.jl:741
[7] _require(::Base.PkgId) at ./loading.jl:1032
[8] require(::Base.PkgId) at ./loading.jl:920
[9] require(::Module, ::Symbol) at ./loading.jl:915
[10] include(::Module, ::String) at ./Base.jl:377
[11] top-level scope at none:2
[12] eval at ./boot.jl:331 [inlined]
[13] eval(::Expr) at ./client.jl:449
[14] top-level scope at ./none:3
during initialization of module PandasLite
in expression starting at /home/pkgeval/.julia/packages/MLInterpret/dR26R/src/MLInterpret.jl:4
ERROR: LoadError: Failed to precompile MLInterpret [8be67bde-e6c3-11e9-38b8-61e71f321663] to /home/pkgeval/.julia/compiled/v1.4/MLInterpret/bHwGA_gNjyO.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1263
[3] _require(::Base.PkgId) at ./loading.jl:1022
[4] require(::Base.PkgId) at ./loading.jl:920
[5] require(::Module, ::Symbol) at ./loading.jl:915
[6] include(::String) at ./client.jl:439
[7] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/MLInterpret/dR26R/test/runtests.jl:1
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/MLInterpret/dR26R/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/MLInterpret/dR26R/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package MLInterpret errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1475
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:300
[5] #test#66 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:294 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:293 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:292
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:292
[11] top-level scope at none:12