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1.4.0-DEV-81899bf99e.log
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1.4.0-DEV-81899bf99e.log
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Julia Version 1.4.0-DEV.634
Commit 81899bf99e (2019-12-18 10:13 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed Missings ──────────────────── v0.4.3
Installed OrderedCollections ────────── v1.1.0
Installed Polynomials ───────────────── v0.6.0
Installed TranscodingStreams ────────── v0.9.5
Installed ColorTypes ────────────────── v0.9.0
Installed StatsBase ─────────────────── v0.32.0
Installed GenomicVectors ────────────── v0.4.1
Installed DataFrames ────────────────── v0.19.4
Installed Codecs ────────────────────── v0.5.0
Installed Tables ────────────────────── v0.2.11
Installed RecipesBase ───────────────── v0.7.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Libz ──────────────────────── v1.0.1
Installed Twiddle ───────────────────── v1.1.1
Installed ShiftedArrays ─────────────── v1.0.0
Installed InvertedIndices ───────────── v1.0.0
Installed CodecZlib ─────────────────── v0.6.0
Installed Combinatorics ─────────────── v0.7.0
Installed BioAlignments ─────────────── v1.0.0
Installed Parsers ───────────────────── v0.3.10
Installed WinReg ────────────────────── v0.3.1
Installed Automa ────────────────────── v0.8.0
Installed BufferedStreams ───────────── v1.0.0
Installed Reexport ──────────────────── v0.2.0
Installed DataAPI ───────────────────── v1.1.0
Installed FixedPointNumbers ─────────── v0.5.3
Installed VersionParsing ────────────── v1.2.0
Installed Requires ──────────────────── v0.5.2
Installed BinaryProvider ────────────── v0.5.8
Installed StatsModels ───────────────── v0.6.7
Installed GenomicFeatures ───────────── v1.0.0
Installed RCall ─────────────────────── v0.13.4
Installed YAML ──────────────────────── v0.3.2
Installed SortingAlgorithms ─────────── v0.3.1
Installed Conda ─────────────────────── v1.3.0
Installed Compat ────────────────────── v2.2.0
Installed DataStructures ────────────── v0.17.6
Installed IndexableBitVectors ───────── v1.0.0
Installed CategoricalArrays ─────────── v0.7.4
Installed PooledArrays ──────────────── v0.5.2
Installed BioCore ───────────────────── v2.0.5
Installed BioSequences ──────────────── v1.1.0
Installed URIParser ─────────────────── v0.4.0
Installed BGZFStreams ───────────────── v0.3.0
Installed BioSymbols ────────────────── v3.1.0
Installed DataValueInterfaces ───────── v1.0.0
Installed JSON ──────────────────────── v0.21.0
Installed TableTraits ───────────────── v1.0.0
Installed IntervalTrees ─────────────── v1.0.0
Installed RLEVectors ────────────────── v0.9.2
Updating `~/.julia/environments/v1.4/Project.toml`
[96124ad7] + GenomicVectors v0.4.1
Updating `~/.julia/environments/v1.4/Manifest.toml`
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.8
[00701ae9] + BioAlignments v1.0.0
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[e1450e63] + BufferedStreams v1.0.0
[324d7699] + CategoricalArrays v0.7.4
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.9.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[53c48c17] + FixedPointNumbers v0.5.3
[899a7d2d] + GenomicFeatures v1.0.0
[96124ad7] + GenomicVectors v0.4.1
[1cb3b9ac] + IndexableBitVectors v1.0.0
[524e6230] + IntervalTrees v1.0.0
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[2ec943e9] + Libz v1.0.1
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.2
[6f49c342] + RCall v0.13.4
[17b45ede] + RLEVectors v0.9.2
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[1277b4bf] + ShiftedArrays v1.0.0
[a2af1166] + SortingAlgorithms v0.3.1
[2913bbd2] + StatsBase v0.32.0
[3eaba693] + StatsModels v0.6.7
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[30578b45] + URIParser v0.4.0
[81def892] + VersionParsing v1.2.0
[1b915085] + WinReg v0.3.1
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Path `/home/pkgeval/.julia/packages/CodecZlib/5t9zO` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_pJnvn0/Project.toml`
[944b1d66] + CodecZlib v0.6.0 [`~/.julia/packages/CodecZlib/5t9zO`]
Updating `/tmp/jl_pJnvn0/Manifest.toml`
[944b1d66] ~ CodecZlib v0.6.0 ⇒ v0.6.0 [`~/.julia/packages/CodecZlib/5t9zO`]
Building Conda ────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Path `/home/pkgeval/.julia/packages/Conda/kLXeC` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_ezEqV0/Project.toml`
[8f4d0f93] + Conda v1.3.0 [`~/.julia/packages/Conda/kLXeC`]
Updating `/tmp/jl_ezEqV0/Manifest.toml`
[8f4d0f93] ~ Conda v1.3.0 ⇒ v1.3.0 [`~/.julia/packages/Conda/kLXeC`]
Building RCall ────→ `~/.julia/packages/RCall/g7dhB/deps/build.log`
ERROR: Compat `AxisArrays` not listed in `deps` or `extras` section.
Stacktrace:
[1] pkgerror(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:54
[2] validate(::Pkg.Types.Project) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/project.jl:107
[3] Pkg.Types.Project(::Dict{String,Any}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/project.jl:123
[4] read_project(::IOStream; path::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/project.jl:140
[5] #32 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/project.jl:144 [inlined]
[6] open(::Pkg.Types.var"#32#33"{String}, ::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at ./io.jl:298
[7] open at ./io.jl:296 [inlined]
[8] read_project(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/project.jl:143
[9] sandbox_preserve(::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1310
[10] (::Pkg.Operations.var"#84#86"{Pkg.Operations.var"#59#63"{Bool,Pkg.Types.Context,String,Pkg.Types.PackageSpec,String},Pkg.Types.Context,Pkg.Types.PackageSpec,String,String,Pkg.Types.Project,String})(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1347
[11] mktempdir(::Pkg.Operations.var"#84#86"{Pkg.Operations.var"#59#63"{Bool,Pkg.Types.Context,String,Pkg.Types.PackageSpec,String},Pkg.Types.Context,Pkg.Types.PackageSpec,String,String,Pkg.Types.Project,String}, ::String; prefix::String) at ./file.jl:673
[12] mktempdir(::Function, ::String) at ./file.jl:671 (repeats 2 times)
[13] sandbox(::Function, ::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::String, ::String, ::Pkg.Types.Project) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1333
[14] build_versions(::Pkg.Types.Context, ::Array{Base.UUID,1}; might_need_to_resolve::Bool, verbose::Bool) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:873
[15] build_versions at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:834 [inlined]
[16] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}, ::Array{Base.UUID,1}; preserve::Pkg.Types.PreserveLevel, platform::Pkg.BinaryPlatforms.Linux) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1088
[17] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; preserve::Pkg.Types.PreserveLevel, platform::Pkg.BinaryPlatforms.Linux, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:159
[18] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:112
[19] #add#27 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:109 [inlined]
[20] add at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:109 [inlined]
[21] #add#24 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:107 [inlined]
[22] add at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:107 [inlined]
[23] add(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:106
[24] add(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:106
[25] top-level scope at none:11